HHsearch alignment for GI: 254780666 and conserved domain: COG0781

>COG0781 NusB Transcription termination factor [Transcription].
Probab=99.68  E-value=6.4e-16  Score=137.84  Aligned_cols=135  Identities=21%  Similarity=0.193  Sum_probs=107.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC
Q ss_conf             97784699999999999995599-8899999985112321689--889999999999999608999999999842-8810
Q gi|254780666|r    1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLS--QRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLP   76 (445)
Q Consensus         1 M~~~~~aR~~A~~iL~~v~~~~~-~~~~~l~~~~~~~~~~~L~--~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~   76 (445)
T Consensus         7 ~~~R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~L~~w~~~   86 (151)
T COG0781           7 KLTRRQARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISPHLKKWSLE   86 (151)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             12589999999999999986588325678999999986212101453499999999999997999999999988069888


Q ss_pred             CCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             048899999999999999868-997332562258775225875544444310221100111
Q gi|254780666|r   77 RKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI  136 (445)
Q Consensus        77 ~~~~~~~~iLr~a~~ell~~~-~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~  136 (445)
T Consensus        87 rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e-~s~kFINgVLd~i~~~~~  146 (151)
T COG0781          87 RLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGE-DSHKFVNGVLDKIAKKLR  146 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH
T ss_conf             823999999999999999647999751299999999996778-733779999999998742