HHsearch alignment for GI: 254780666 and conserved domain: COG0781
>COG0781 NusB Transcription termination factor [Transcription].
Probab=99.68 E-value=6.4e-16 Score=137.84 Aligned_cols=135 Identities=21% Similarity=0.193 Sum_probs=107.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC
Q ss_conf 97784699999999999995599-8899999985112321689--889999999999999608999999999842-8810
Q gi|254780666|r 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLS--QRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLP 76 (445)
Q Consensus 1 M~~~~~aR~~A~~iL~~v~~~~~-~~~~~l~~~~~~~~~~~L~--~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~ 76 (445)
T Consensus 7 ~~~R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~L~~w~~~ 86 (151)
T COG0781 7 KLTRRQARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISPHLKKWSLE 86 (151)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 12589999999999999986588325678999999986212101453499999999999997999999999988069888
Q ss_pred CCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 048899999999999999868-997332562258775225875544444310221100111
Q gi|254780666|r 77 RKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 (445)
Q Consensus 77 ~~~~~~~~iLr~a~~ell~~~-~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~ 136 (445)
T Consensus 87 rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e-~s~kFINgVLd~i~~~~~ 146 (151)
T COG0781 87 RLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGE-DSHKFVNGVLDKIAKKLR 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 823999999999999999647999751299999999996778-733779999999998742