HHsearch alignment for GI: 254780666 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.28 E-value=1.7e-06 Score=67.98 Aligned_cols=135 Identities=30% Similarity=0.403 Sum_probs=101.7
Q ss_pred ECCCCCCCCC--CCCCCCCCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 3463212322--23563213310035564470000102568-41000105967987765443204887417720774457
Q gi|254780666|r 225 VQDASASIPV--QLFGTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 (445)
Q Consensus 225 VQD~aSql~~--~~l~~~~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~ 301 (445)
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~ 105 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF 105 (198)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC-CCEEEEECCHHHC
T ss_conf 848999999999873884788888827884788999986297179999369899999998888608-8469998210114
Q ss_pred CCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 74344766896167421100110110333288667788999999999999986089828999774788343999899999
Q gi|254780666|r 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445)
Q Consensus 302 ~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445)
T Consensus 106 --~~~~dtvimNPP---FG~~~rhaDr~F-----------------l~~Ale~s----~vVY---siH~a~~~~f~~~~~ 156 (198)
T COG2263 106 --RGKFDTVIMNPP---FGSQRRHADRPF-----------------LLKALEIS----DVVY---SIHKAGSRDFVEKFA 156 (198)
T ss_pred --CCCCCEEEECCC---CCCCCCCCCHHH-----------------HHHHHHHH----HEEE---EEECCCCHHHHHHHH
T ss_conf --776666997899---732213688899-----------------99999740----1478---740166079999998
Q ss_pred HHCCCCEE
Q ss_conf 96887417
Q gi|254780666|r 382 RSSPIPVE 389 (445)
Q Consensus 382 ~~~~~~~~ 389 (445)
T Consensus 157 ~~~G~~v~ 164 (198)
T COG2263 157 ADLGGTVT 164 (198)
T ss_pred HHCCCEEE
T ss_conf 85497089