HHsearch alignment for GI: 254780666 and conserved domain: COG2264
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=97.98 E-value=3.6e-05 Score=58.12 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=95.3
Q ss_pred CCCCCCCCCCC--CCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC
Q ss_conf 32123222356--32133100355644700001025684-10001059679877654432048874-1772077445774
Q gi|254780666|r 228 ASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP 303 (445)
Q Consensus 228 ~aSql~~~~l~--~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~ 303 (445)
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~ 226 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE 226 (300)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCC
T ss_conf 01799999999860589879982678159999999819866899718889999999999976996022003456300013
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
T Consensus 227 ~~~~DvIVA-----------------------NI--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~~ 278 (300)
T COG2264 227 NGPFDVIVA-----------------------NI--LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYEQ 278 (300)
T ss_pred CCCCCEEEE-----------------------HH--HHHHHHHHHHHHHHHCCCCCEEEEEE--ECHHH-HHHHHHHHHH
T ss_conf 686568986-----------------------05--27899999999998708893699986--20758-9999999985
Q ss_pred CC
Q ss_conf 88
Q gi|254780666|r 384 SP 385 (445)
Q Consensus 384 ~~ 385 (445)
T Consensus 279 ~g 280 (300)
T COG2264 279 AG 280 (300)
T ss_pred CC
T ss_conf 89