HHsearch alignment for GI: 254780666 and conserved domain: COG2264

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=97.98  E-value=3.6e-05  Score=58.12  Aligned_cols=130  Identities=19%  Similarity=0.215  Sum_probs=95.3

Q ss_pred             CCCCCCCCCCC--CCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC
Q ss_conf             32123222356--32133100355644700001025684-10001059679877654432048874-1772077445774
Q gi|254780666|r  228 ASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP  303 (445)
Q Consensus       228 ~aSql~~~~l~--~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~  303 (445)
T Consensus       147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~  226 (300)
T COG2264         147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE  226 (300)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCC
T ss_conf             01799999999860589879982678159999999819866899718889999999999976996022003456300013


Q ss_pred             CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf             34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r  304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS  383 (445)
Q Consensus       304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~  383 (445)
T Consensus       227 ~~~~DvIVA-----------------------NI--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~~  278 (300)
T COG2264         227 NGPFDVIVA-----------------------NI--LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYEQ  278 (300)
T ss_pred             CCCCCEEEE-----------------------HH--HHHHHHHHHHHHHHHCCCCCEEEEEE--ECHHH-HHHHHHHHHH
T ss_conf             686568986-----------------------05--27899999999998708893699986--20758-9999999985


Q ss_pred             CC
Q ss_conf             88
Q gi|254780666|r  384 SP  385 (445)
Q Consensus       384 ~~  385 (445)
T Consensus       279 ~g  280 (300)
T COG2264         279 AG  280 (300)
T ss_pred             CC
T ss_conf             89