HHsearch alignment for GI: 254780666 and conserved domain: PRK04338
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional.
Probab=97.74 E-value=3.6e-05 Score=58.08 Aligned_cols=106 Identities=24% Similarity=0.258 Sum_probs=75.7
Q ss_pred CCCCCCCEECCCCCCCCCEEEEC-CC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEEC
Q ss_conf 63213310035564470000102-56-84100010596798776544320488741772077445774--3447668961
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLI-VS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVD 313 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~-~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlD 313 (445)
T Consensus 48 ~~~~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~~~~~~fD~IDlD 127 (376)
T PRK04338 48 GPKRRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLHENERKFDVVDID 127 (376)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEC
T ss_conf 42069768740676549999998727998799956999999999999998299826981324899998378758778678
Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
Q ss_conf 674211001101103332886677889999999999999860898289997747883
Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 (445)
Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~ 370 (445)
T Consensus 128 PfGSp~--------------------------pflDsAi~~v~~~G-lL~vTaTD~a 157 (376)
T PRK04338 128 PFGSPA--------------------------PFLDSAIRALRRGG-LLCVTATDTA 157 (376)
T ss_pred CCCCCC--------------------------HHHHHHHHHHHCCC-EEEEEECCCC
T ss_conf 999920--------------------------87999999840398-8999946861