HHsearch alignment for GI: 254780666 and conserved domain: PRK05031
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=98.56 E-value=7.2e-08 Score=78.10 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------
Q ss_conf 23563213310035564470000102568410001059679877654432048874177207744577------------
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------ 302 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------------ 302 (445)
T Consensus 202 ~~~~~~~~-~vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~~~~~l 280 (363)
T PRK05031 202 DATKGSKG-DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFRRL 280 (363)
T ss_pred HHHHCCCC-CEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHCC
T ss_conf 97613898-28986058664269988626879999538999999999999869986499965899999987343101001
Q ss_pred -----CCCCCCEEEECCCCCCCC
Q ss_conf -----434476689616742110
Q gi|254780666|r 303 -----PKKLFDAVLVDAPCSSTG 320 (445)
Q Consensus 303 -----~~~~fD~iLlDaPCSg~G 320 (445)
T Consensus 281 ~~~~~~~~~~d~vvvDPPR~Gl~ 303 (363)
T PRK05031 281 KGIDLKSYNFSTIFVDPPRAGLD 303 (363)
T ss_pred CCCCCCCCCCCEEEECCCCCCCC
T ss_conf 24664435586489899988874