HHsearch alignment for GI: 254780666 and conserved domain: PRK09489
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional.
Probab=98.55 E-value=2.1e-07 Score=74.67 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=109.0
Q ss_pred HHCHH-HHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 55850-11001013463212322235632133100355644700001025--6841000105967987765443204887
Q gi|254780666|r 213 VSLPG-FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 (445)
Q Consensus 213 ~~~~~-f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~ 289 (445)
T Consensus 170 ~slPGVFS~~~l---D~GS~lLL~~l~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~ 246 (342)
T PRK09489 170 KTLPGVFSRDGL---DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLE 246 (342)
T ss_pred ECCCCCCCCCCC---CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 336875789997---87999999737832488478606781799999998699976999968899999999989980988
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 41772077445774344766896167421100110110333288667788999999999999986089828999774788
Q gi|254780666|r 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 290 ~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
T Consensus 247 ~-~v~~sd~~~~v-~~~fD~IvsNPPF------H~--G---~~~~~------~i~~~fi~~A~~~L~~gG~L~iVANr~L 307 (342)
T PRK09489 247 G-EVFASNVFSEI-KGRFDMIISNPPF------HD--G---IQTSL------DAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred C-EEEECCCCCCC-CCCCCEEEECCCC------CC--C---CCCCH------HHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 6-89975644565-5678989968852------15--7---52658------9999999999986124988999981898
Q ss_pred HHH
Q ss_conf 343
Q gi|254780666|r 370 KQD 372 (445)
Q Consensus 370 ~eE 372 (445)
T Consensus 308 pY~ 310 (342)
T PRK09489 308 PYP 310 (342)
T ss_pred CCH
T ss_conf 968