HHsearch alignment for GI: 254780666 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.28 E-value=1.9e-06 Score=67.55 Aligned_cols=137 Identities=23% Similarity=0.348 Sum_probs=102.7
Q ss_pred CCEECCCCCCCCCCCCC---------C----------CCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHH
Q ss_conf 10134632123222356---------3----------21331003556447000010256841-0001059679877654
Q gi|254780666|r 222 VWWVQDASASIPVQLFG---------T----------LNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRC 281 (445)
Q Consensus 222 ~~~VQD~aSql~~~~l~---------~----------~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~ 281 (445)
T Consensus 514 ~~~v~E~~~~f~vNl~dYlDtGLFLDhR~~R~~i~~~a~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~ 593 (716)
T PRK11783 514 FLIVTEYGAKLWVNLTDYLDTGLFLDHRPTRRMIGQMAKGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAER 593 (716)
T ss_pred EEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 69999578689997772022674544379999999970788464312225610213352796122786270879999999
Q ss_pred HHHCCCCCC--EEEEECCCCCCCC--CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 432048874--1772077445774--344766896167421100110110333288667788999999999999986089
Q gi|254780666|r 282 NLDRLHLYA--EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 (445)
Q Consensus 282 ~~~R~g~~~--~~~~~~D~~~~~~--~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~ 357 (445)
T Consensus 594 N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPPt-----FSn------Sk~m~~~~dvqrDh~~li~~~~~~L~~ 662 (716)
T PRK11783 594 NFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPPT-----FSN------SKRMEDSFDVQRDHVALIKLAMRLLRP 662 (716)
T ss_pred HHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCC-----CCC------CCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 998549996347389640899998577766789988999-----987------666788632203099999999986089
Q ss_pred CCEEEEEECCCC
Q ss_conf 828999774788
Q gi|254780666|r 358 GGIVVFSNCSLD 369 (445)
Q Consensus 358 gG~lvYsTCSi~ 369 (445)
T Consensus 663 ~G~l~FS~N~r~ 674 (716)
T PRK11783 663 GGTLYFSNNKRG 674 (716)
T ss_pred CCEEEEECCCCC
T ss_conf 968999628876