HHsearch alignment for GI: 254780666 and conserved domain: TIGR02143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=97.41 E-value=8.7e-05 Score=55.24 Aligned_cols=122 Identities=16% Similarity=0.309 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC------------
Q ss_conf 22356321331003556447000010256841000105967987765443204887417720774457------------
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY------------ 301 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~------------ 301 (445)
T Consensus 196 ~~~~~~~~g~DLLELYCGNGNFsLaLA~~f~rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEEft~A~~~~R~F~R 275 (361)
T TIGR02143 196 LEVTQNSKGMDLLELYCGNGNFSLALAQNFERVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEEFTEAMNGVREFRR 275 (361)
T ss_pred HHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99835888872010002675310445653334554302402479999998717988310102327999998603776546
Q ss_pred -CC------CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCH
Q ss_conf -74------34476689616742110011011033328866778899999999999998608982899977478834399
Q gi|254780666|r 302 -CP------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 (445)
Q Consensus 302 -~~------~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne 374 (445)
T Consensus 276 L~d~gIdL~~Y~f~tiFVDPPRaGl-------------D~---------------~t~~Lv~~y~rIlYISC--NP~TL~ 325 (361)
T TIGR02143 276 LKDGGIDLKSYNFNTIFVDPPRAGL-------------DP---------------DTVKLVQKYERILYISC--NPETLK 325 (361)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCC-------------CH---------------HHHHHHHHCCCEEEEEC--CHHHHH
T ss_conf 5668863342025602677988888-------------98---------------99999962598799846--968999
Q ss_pred HHHHHHHHHCC
Q ss_conf 98999999688
Q gi|254780666|r 375 EVVQKVLRSSP 385 (445)
Q Consensus 375 ~vV~~fL~~~~ 385 (445)
T Consensus 326 ~NL~~L~~TH~ 336 (361)
T TIGR02143 326 ENLEQLSETHR 336 (361)
T ss_pred HHHHHHHHCCE
T ss_conf 99998860653