HHsearch alignment for GI: 254780666 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.61 E-value=1.5e-07 Score=75.81 Aligned_cols=139 Identities=27% Similarity=0.447 Sum_probs=103.5
Q ss_pred CCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 33100355644700001025--6841000105967987765443204887417720774457743447668961674211
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445)
T Consensus 88 ~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYI~~ 167 (251)
T TIGR03534 88 PLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCEEEECCCCCCH
T ss_conf 98699955671699999999679978999989879999999999980998268651314321568986689978998874
Q ss_pred CHHHC-CCHHHHCCCHH-HH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 00110-11033328866-77---889999999999999860898289997747883439998999999688
Q gi|254780666|r 320 GTIRR-HPDVLWTRDTD-DI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 320 Gt~rr-~Pd~~w~~~~~-~l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
T Consensus 168 ~e~~~l~~eV~~~-EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~E---ig~-~q~~~v~~l~~~~g 233 (251)
T TIGR03534 168 ADIHLLDPEVRFH-EPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLE---IGY-DQGEAVRALFEAAG 233 (251)
T ss_pred HHHHHCCCHHCCC-CHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE---ECH-HHHHHHHHHHHHCC
T ss_conf 5666328601026-729997179846999999999999853679889999---683-78999999999689