HHsearch alignment for GI: 254780666 and conserved domain: TIGR03534

>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.61  E-value=1.5e-07  Score=75.81  Aligned_cols=139  Identities=27%  Similarity=0.447  Sum_probs=103.5

Q ss_pred             CCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf             33100355644700001025--6841000105967987765443204887417720774457743447668961674211
Q gi|254780666|r  242 NLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST  319 (445)
Q Consensus       242 g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~  319 (445)
T Consensus        88 ~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYI~~  167 (251)
T TIGR03534        88 PLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLPGGKFDLIVSNPPYIPE  167 (251)
T ss_pred             CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCEEEECCCCCCH
T ss_conf             98699955671699999999679978999989879999999999980998268651314321568986689978998874


Q ss_pred             CHHHC-CCHHHHCCCHH-HH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf             00110-11033328866-77---889999999999999860898289997747883439998999999688
Q gi|254780666|r  320 GTIRR-HPDVLWTRDTD-DI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP  385 (445)
Q Consensus       320 Gt~rr-~Pd~~w~~~~~-~l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~  385 (445)
T Consensus       168 ~e~~~l~~eV~~~-EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~E---ig~-~q~~~v~~l~~~~g  233 (251)
T TIGR03534       168 ADIHLLDPEVRFH-EPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLE---IGY-DQGEAVRALFEAAG  233 (251)
T ss_pred             HHHHHCCCHHCCC-CHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE---ECH-HHHHHHHHHHHHCC
T ss_conf             5666328601026-729997179846999999999999853679889999---683-78999999999689