HHsearch alignment for GI: 254780666 and conserved domain: cd00315
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.11 E-value=0.013 Score=39.09 Aligned_cols=77 Identities=26% Similarity=0.303 Sum_probs=58.0
Q ss_pred CCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---CCCCCEEEECCCCCC
Q ss_conf 31003556447000010256841-00010596798776544320488741772077445774---344766896167421
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---~~~fD~iLlDaPCSg 318 (445)
T Consensus 1 l~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~------~~~~~Di~~~~~~~~~~~vDll~ggpPCQ~ 74 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred CCEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCCHHHCCCCCCCCCCCEEEECCCCCC
T ss_conf 95999767807899999986998999996899999999988799------952588644653213788788986899987
Q ss_pred CCHHHCC
Q ss_conf 1001101
Q gi|254780666|r 319 TGTIRRH 325 (445)
Q Consensus 319 ~Gt~rr~ 325 (445)
T Consensus 75 fS~ag~~ 81 (275)
T cd00315 75 FSIAGKR 81 (275)
T ss_pred CCCCCCC
T ss_conf 3547863