HHsearch alignment for GI: 254780666 and conserved domain: cd00315

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.11  E-value=0.013  Score=39.09  Aligned_cols=77  Identities=26%  Similarity=0.303  Sum_probs=58.0

Q ss_pred             CCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---CCCCCEEEECCCCCC
Q ss_conf             31003556447000010256841-00010596798776544320488741772077445774---344766896167421
Q gi|254780666|r  243 LSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS  318 (445)
Q Consensus       243 ~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---~~~fD~iLlDaPCSg  318 (445)
T Consensus         1 l~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~------~~~~~Di~~~~~~~~~~~vDll~ggpPCQ~   74 (275)
T cd00315           1 LRVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP   74 (275)
T ss_pred             CCEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCCHHHCCCCCCCCCCCEEEECCCCCC
T ss_conf             95999767807899999986998999996899999999988799------952588644653213788788986899987


Q ss_pred             CCHHHCC
Q ss_conf             1001101
Q gi|254780666|r  319 TGTIRRH  325 (445)
Q Consensus       319 ~Gt~rr~  325 (445)
T Consensus        75 fS~ag~~   81 (275)
T cd00315          75 FSIAGKR   81 (275)
T ss_pred             CCCCCCC
T ss_conf             3547863