HHsearch alignment for GI: 254780666 and conserved domain: cd00620
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.94 E-value=1.2e-26 Score=217.48 Aligned_cols=125 Identities=38% Similarity=0.448 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 46999999999999955998899999985112321689889999999999999608999999999842881004889999
Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84 (445)
Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~~~~ 84 (445)
T Consensus 1 mnaR~~A~~iL~~V~~~~~~~~~~l~~~~~----~~l~~~Dra~~~~lv~g~lR~~~~ld~~l~~~l~~p~~~~~~~~~~ 76 (126)
T cd00620 1 MNARSTAAEVLRDVLQRGASLNAVLSALQK----KDKSDRDRGLATELVYGTLRWLALLDWIINPLLKKPDVGKDPDVRN 76 (126)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 989999999999999679989999999886----5799888999999999999819999999999857771107999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 99999999998689973325622587752258755444443102211001
Q gi|254780666|r 85 LLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445)
Q Consensus 85 iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445)
T Consensus 77 lLrlg~yql~~~~~p~~A~VneaV~lak~~~-~~~~~~lVNAVLR~~~Re 125 (126)
T cd00620 77 LLRLGLYQLLYLDVPPHAAVDETVEIAKIRK-DLGRAGLVNAVLRRFERE 125 (126)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCC
T ss_conf 9999999987079996106999999999868-997666138983087625