HHsearch alignment for GI: 254780666 and conserved domain: cd00620

>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.94  E-value=1.2e-26  Score=217.48  Aligned_cols=125  Identities=38%  Similarity=0.448  Sum_probs=116.2

Q ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             46999999999999955998899999985112321689889999999999999608999999999842881004889999
Q gi|254780666|r    5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ   84 (445)
Q Consensus         5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~~~~   84 (445)
T Consensus         1 mnaR~~A~~iL~~V~~~~~~~~~~l~~~~~----~~l~~~Dra~~~~lv~g~lR~~~~ld~~l~~~l~~p~~~~~~~~~~   76 (126)
T cd00620           1 MNARSTAAEVLRDVLQRGASLNAVLSALQK----KDKSDRDRGLATELVYGTLRWLALLDWIINPLLKKPDVGKDPDVRN   76 (126)
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             989999999999999679989999999886----5799888999999999999819999999999857771107999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             99999999998689973325622587752258755444443102211001
Q gi|254780666|r   85 LLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE  134 (445)
Q Consensus        85 iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~  134 (445)
T Consensus        77 lLrlg~yql~~~~~p~~A~VneaV~lak~~~-~~~~~~lVNAVLR~~~Re  125 (126)
T cd00620          77 LLRLGLYQLLYLDVPPHAAVDETVEIAKIRK-DLGRAGLVNAVLRRFERE  125 (126)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCC
T ss_conf             9999999987079996106999999999868-997666138983087625