Query gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 445
No_of_seqs 181 out of 3318
Neff 7.5
Searched_HMMs 39220
Date Sun May 29 21:13:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780666.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10901 16S rRNA methyltransf 100.0 0 0 837.3 35.2 410 2-441 1-428 (428)
2 TIGR00563 rsmB ribosomal RNA s 100.0 0 0 792.0 24.8 422 8-442 1-487 (487)
3 COG0144 Sun tRNA and rRNA cyto 100.0 0 0 597.5 23.6 334 98-442 1-355 (355)
4 PRK11933 yebU rRNA (cytosine-C 100.0 0 0 530.5 21.2 286 146-442 2-308 (471)
5 pfam01189 Nol1_Nop2_Fmu NOL1/N 100.0 0 0 520.8 20.5 261 168-439 1-277 (277)
6 TIGR00446 nop2p NOL1/NOP2/sun 100.0 0 0 492.2 12.4 255 178-440 1-284 (284)
7 KOG1122 consensus 100.0 0 0 481.7 17.6 384 41-442 35-442 (460)
8 KOG2198 consensus 100.0 3.1E-40 8.4E-45 318.2 9.2 180 217-396 131-327 (375)
9 KOG2360 consensus 100.0 4.7E-37 1.2E-41 294.6 16.9 383 10-441 3-413 (413)
10 cd00620 Methyltransferase_Sun 99.9 1.2E-26 3E-31 217.5 12.9 125 5-134 1-125 (126)
11 pfam01029 NusB NusB family. Th 99.9 5.1E-21 1.3E-25 175.7 12.7 124 5-133 1-126 (126)
12 cd00447 NusB_Sun RNA binding d 99.8 1.6E-20 4.2E-25 171.9 12.1 125 6-134 1-128 (129)
13 PRK00202 nusB transcription an 99.8 4.7E-20 1.2E-24 168.5 12.1 128 3-134 2-131 (132)
14 cd00619 Terminator_NusB Transc 99.8 1.5E-18 3.9E-23 157.3 11.9 126 5-134 2-129 (130)
15 TIGR01951 nusB transcription a 99.8 7.8E-18 2E-22 152.0 12.6 128 5-133 2-140 (140)
16 COG0781 NusB Transcription ter 99.7 6.4E-16 1.6E-20 137.8 11.4 135 1-136 7-146 (151)
17 PRK09634 nusB transcription an 99.5 1.5E-13 3.9E-18 120.2 6.7 89 45-134 113-202 (206)
18 pfam05175 MTS Methyltransferas 99.2 2.5E-11 6.4E-16 103.8 6.5 131 226-373 16-148 (170)
19 COG1092 Predicted SAM-dependen 99.1 5.1E-11 1.3E-15 101.5 4.7 152 216-383 195-356 (393)
20 pfam10672 Methyltrans_SAM S-ad 99.1 1.1E-09 2.9E-14 91.5 9.8 151 215-385 100-257 (286)
21 COG2242 CobL Precorrin-6B meth 99.0 5.9E-09 1.5E-13 86.2 9.7 131 235-395 28-161 (187)
22 pfam02475 Met_10 Met-10+ like- 99.0 1.3E-09 3.3E-14 91.0 5.8 99 239-363 98-199 (199)
23 PRK08317 hypothetical protein; 98.9 2.3E-09 5.8E-14 89.2 6.2 126 234-383 12-146 (241)
24 PRK11805 N5-glutamine S-adenos 98.9 9.4E-09 2.4E-13 84.7 8.1 125 240-366 132-264 (307)
25 PRK08287 cobalt-precorrin-6Y C 98.9 2.8E-08 7.2E-13 81.1 10.2 132 236-396 25-159 (186)
26 PRK00377 cbiT cobalt-precorrin 98.9 1.8E-08 4.7E-13 82.5 9.1 136 235-398 34-175 (198)
27 PRK11873 arsM arsenite S-adeno 98.9 3E-09 7.7E-14 88.3 5.0 121 227-369 59-183 (258)
28 TIGR03533 L3_gln_methyl protei 98.8 8.3E-09 2.1E-13 85.1 6.8 123 239-363 119-249 (284)
29 pfam01209 Ubie_methyltran ubiE 98.8 3.3E-09 8.4E-14 88.0 4.1 125 233-382 39-167 (233)
30 PRK05134 3-demethylubiquinone- 98.8 5.1E-09 1.3E-13 86.6 4.8 109 238-369 45-155 (233)
31 cd02440 AdoMet_MTases S-adenos 98.8 9.6E-09 2.5E-13 84.6 5.8 101 244-365 1-104 (107)
32 PRK07402 precorrin-6B methylas 98.8 5.1E-08 1.3E-12 79.2 9.1 121 236-385 35-159 (196)
33 PRK00216 ubiE ubiquinone/menaq 98.8 1.1E-08 2.8E-13 84.2 5.5 116 235-374 45-165 (239)
34 PRK03522 rumB 23S rRNA methylu 98.7 1.7E-08 4.3E-13 82.8 4.6 109 235-369 227-337 (375)
35 PTZ00098 phosphoethanolamine N 98.7 8.4E-08 2.1E-12 77.6 7.7 125 237-383 48-176 (263)
36 COG2226 UbiE Methylase involve 98.7 2.8E-08 7.1E-13 81.1 5.3 117 236-376 46-165 (238)
37 COG2519 GCD14 tRNA(1-methylade 98.7 3.1E-08 7.9E-13 80.8 5.2 123 218-367 71-198 (256)
38 COG2265 TrmA SAM-dependent met 98.7 4.2E-08 1.1E-12 79.9 5.8 86 235-320 287-376 (432)
39 COG1041 Predicted DNA modifica 98.7 1E-07 2.7E-12 76.9 7.7 121 233-366 189-311 (347)
40 PRK09328 N5-glutamine S-adenos 98.6 1.1E-07 2.7E-12 76.8 7.2 136 242-385 110-254 (277)
41 pfam08704 GCD14 tRNA methyltra 98.6 7.8E-08 2E-12 77.9 6.3 127 223-385 86-225 (309)
42 pfam09445 Methyltransf_15 RNA 98.6 1.8E-08 4.6E-13 82.5 2.6 127 243-382 2-135 (165)
43 TIGR03534 RF_mod_HemK protein- 98.6 1.5E-07 3.7E-12 75.8 7.1 139 242-385 88-233 (251)
44 smart00828 PKS_MT Methyltransf 98.6 8.9E-08 2.3E-12 77.4 5.7 122 243-386 1-137 (224)
45 PRK01544 bifunctional N5-gluta 98.6 1.7E-07 4.4E-12 75.3 7.1 154 240-397 134-308 (503)
46 PRK11207 tellurite resistance 98.6 2.1E-07 5.4E-12 74.6 7.3 110 236-365 25-134 (198)
47 COG2813 RsmC 16S RNA G1207 met 98.6 2.3E-07 5.8E-12 74.4 7.3 135 226-384 143-279 (300)
48 pfam01170 UPF0020 Putative RNA 98.6 2.3E-07 5.9E-12 74.4 7.2 121 235-371 22-146 (171)
49 PRK05031 tRNA (uracil-5-)-meth 98.6 7.2E-08 1.8E-12 78.1 4.4 85 235-320 202-303 (363)
50 COG2520 Predicted methyltransf 98.6 5.7E-07 1.5E-11 71.4 8.9 140 219-384 157-311 (341)
51 PRK09489 rsmC 16S ribosomal RN 98.5 2.1E-07 5.3E-12 74.7 6.5 138 213-372 170-310 (342)
52 PRK13168 rumA 23S rRNA 5-methy 98.5 2.2E-07 5.6E-12 74.5 6.6 85 234-318 287-376 (440)
53 COG4123 Predicted O-methyltran 98.5 2E-07 5.1E-12 74.8 5.2 143 230-385 33-186 (248)
54 PRK10909 rsmD 16S rRNA m(2)G96 98.5 1.5E-07 3.8E-12 75.7 4.2 105 240-365 51-158 (198)
55 PRK01683 trans-aconitate 2-met 98.5 4E-07 1E-11 72.5 6.1 102 237-365 27-130 (252)
56 TIGR02469 CbiT precorrin-6Y C5 98.5 2.3E-07 5.9E-12 74.3 4.8 103 236-363 14-131 (135)
57 pfam05958 tRNA_U5-meth_tr tRNA 98.4 1.9E-07 5E-12 74.9 4.1 85 235-320 192-293 (353)
58 PRK11188 rrmJ 23S rRNA methylt 98.4 2E-06 5.2E-11 67.4 9.0 120 240-384 50-181 (209)
59 PRK13943 protein-L-isoaspartat 98.4 4.2E-07 1.1E-11 72.4 5.4 81 235-315 69-153 (317)
60 PRK13942 protein-L-isoaspartat 98.4 4.6E-07 1.2E-11 72.2 5.4 105 234-366 69-177 (214)
61 PRK00312 pcm protein-L-isoaspa 98.4 8.1E-07 2.1E-11 70.3 5.7 104 234-365 71-175 (213)
62 COG2890 HemK Methylase of poly 98.4 1.5E-06 3.9E-11 68.3 7.0 133 244-385 113-254 (280)
63 PRK09329 N5-glutamine S-adenos 98.3 2.3E-06 5.8E-11 67.0 7.3 136 243-385 111-253 (285)
64 pfam02384 N6_Mtase N-6 DNA Met 98.3 2.3E-06 5.8E-11 67.0 6.7 164 219-384 24-205 (312)
65 PRK10258 biotin biosynthesis p 98.3 5.8E-07 1.5E-11 71.4 3.6 118 223-367 24-142 (251)
66 COG2263 Predicted RNA methylas 98.3 1.7E-06 4.3E-11 68.0 5.8 135 225-389 27-164 (198)
67 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.9E-06 4.9E-11 67.6 6.0 137 222-369 514-674 (716)
68 KOG1540 consensus 98.2 5.5E-06 1.4E-10 64.2 7.4 129 235-388 94-234 (296)
69 pfam02353 CMAS Cyclopropane-fa 98.2 1.4E-06 3.6E-11 68.5 4.4 122 226-369 47-170 (273)
70 pfam01135 PCMT Protein-L-isoas 98.2 1.4E-06 3.7E-11 68.5 4.0 105 234-366 66-174 (205)
71 PRK11036 putative metallothion 98.2 3.5E-06 8.9E-11 65.6 5.7 129 226-383 32-163 (256)
72 COG2227 UbiG 2-polyprenyl-3-me 98.2 1.5E-06 3.9E-11 68.3 3.4 107 240-369 58-165 (243)
73 TIGR01983 UbiG ubiquinone bios 98.2 8.1E-07 2.1E-11 70.3 1.9 108 237-366 80-197 (275)
74 pfam03848 TehB Tellurite resis 98.2 6.1E-06 1.6E-10 63.8 6.4 109 237-366 26-134 (192)
75 COG2518 Pcm Protein-L-isoaspar 98.0 3E-06 7.6E-11 66.1 3.0 105 234-366 65-170 (209)
76 TIGR00438 rrmJ ribosomal RNA l 98.0 1.3E-05 3.3E-10 61.4 6.2 122 239-383 30-165 (192)
77 TIGR00479 rumA 23S rRNA (uraci 98.0 2.7E-06 6.9E-11 66.4 2.6 83 236-318 289-376 (434)
78 KOG2904 consensus 98.0 2E-05 5E-10 60.0 6.9 143 241-385 148-303 (328)
79 COG0742 N6-adenine-specific me 98.0 4.2E-06 1.1E-10 65.0 3.5 108 236-363 36-152 (187)
80 pfam01728 FtsJ FtsJ-like methy 98.0 3.9E-05 1E-09 57.8 8.1 119 240-384 20-150 (176)
81 COG2230 Cfa Cyclopropane fatty 98.0 1E-05 2.6E-10 62.2 5.0 130 232-384 63-194 (283)
82 COG0293 FtsJ 23S rRNA methylas 98.0 2.2E-05 5.5E-10 59.7 6.5 120 240-384 44-175 (205)
83 COG2264 PrmA Ribosomal protein 98.0 3.6E-05 9.1E-10 58.1 7.4 130 228-385 147-280 (300)
84 pfam05401 NodS Nodulation prot 98.0 1.1E-05 2.7E-10 62.0 4.7 120 223-364 25-145 (201)
85 PRK13944 protein-L-isoaspartat 97.9 1.2E-05 3.1E-10 61.6 3.9 105 234-366 65-174 (205)
86 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 5E-06 1.3E-10 64.5 1.9 121 240-384 42-178 (242)
87 pfam01596 Methyltransf_3 O-met 97.9 1.5E-05 3.9E-10 60.9 4.2 114 228-366 31-155 (204)
88 PRK00517 prmA ribosomal protei 97.9 0.0001 2.6E-09 54.7 8.4 128 228-385 147-278 (298)
89 TIGR00095 TIGR00095 putative m 97.9 1.9E-05 4.7E-10 60.2 4.3 110 239-362 53-174 (210)
90 pfam03602 Cons_hypoth95 Conser 97.8 1E-05 2.6E-10 62.2 2.8 105 240-365 42-151 (181)
91 pfam08241 Methyltransf_11 Meth 97.8 2.7E-05 6.8E-10 59.1 4.3 92 246-362 1-94 (95)
92 COG4122 Predicted O-methyltran 97.8 3.2E-05 8.2E-10 58.5 4.1 118 227-369 45-170 (219)
93 pfam01269 Fibrillarin Fibrilla 97.8 0.00084 2.1E-08 48.0 11.3 121 237-384 69-203 (229)
94 KOG2187 consensus 97.8 8.1E-05 2.1E-09 55.5 6.1 118 234-377 376-500 (534)
95 PRK07580 Mg-protoporphyrin IX 97.8 1.6E-05 4.2E-10 60.6 2.6 108 239-370 61-169 (230)
96 PRK04338 N(2),N(2)-dimethylgua 97.7 3.6E-05 9.2E-10 58.1 4.1 106 238-370 48-157 (376)
97 pfam08242 Methyltransf_12 Meth 97.7 1.5E-05 3.8E-10 61.0 2.2 94 246-361 1-98 (98)
98 pfam06325 PrmA Ribosomal prote 97.7 0.00012 3.2E-09 54.1 5.9 125 229-383 146-273 (294)
99 TIGR02752 MenG_heptapren 2-hep 97.6 0.00013 3.4E-09 53.9 5.6 124 235-380 39-166 (231)
100 TIGR00080 pimt protein-L-isoas 97.6 4.5E-05 1.1E-09 57.4 2.7 119 235-384 74-203 (228)
101 COG2521 Predicted archaeal met 97.6 3.7E-05 9.5E-10 58.0 2.1 127 235-380 128-261 (287)
102 TIGR02072 BioC biotin biosynth 97.5 4.9E-05 1.3E-09 57.1 2.4 136 222-382 12-161 (272)
103 TIGR02021 BchM-ChlM magnesium 97.5 6.8E-05 1.7E-09 56.0 3.0 105 239-364 52-158 (224)
104 KOG2730 consensus 97.5 2.1E-05 5.4E-10 59.8 0.3 84 241-324 94-183 (263)
105 KOG1270 consensus 97.5 0.00032 8.2E-09 51.0 6.4 105 238-366 86-196 (282)
106 PRK00107 gidB glucose-inhibite 97.5 0.0011 2.8E-08 47.1 8.7 119 240-385 68-188 (216)
107 PRK11705 cyclopropane fatty ac 97.5 0.00017 4.2E-09 53.2 4.5 127 231-384 157-284 (383)
108 KOG2915 consensus 97.4 0.00021 5.3E-09 52.4 4.7 118 232-381 96-220 (314)
109 TIGR02143 trmA_only tRNA (urac 97.4 8.7E-05 2.2E-09 55.2 2.5 122 234-385 196-336 (361)
110 KOG1271 consensus 97.4 0.00023 5.8E-09 52.1 4.1 120 244-380 70-196 (227)
111 PRK04266 fibrillarin; Provisio 97.3 0.00085 2.2E-08 47.9 6.4 100 237-363 68-174 (226)
112 KOG2671 consensus 97.3 0.00073 1.9E-08 48.4 5.9 150 230-385 197-370 (421)
113 PRK06922 hypothetical protein; 97.3 0.00075 1.9E-08 48.3 6.0 129 236-378 415-550 (679)
114 pfam02390 Methyltransf_4 Putat 97.3 0.00044 1.1E-08 50.0 4.6 126 241-382 20-152 (199)
115 PRK00121 trmB tRNA (guanine-N( 97.2 0.00045 1.1E-08 50.0 4.5 130 241-387 54-189 (229)
116 COG0116 Predicted N6-adenine-s 97.2 0.00081 2.1E-08 48.1 5.7 190 148-369 114-348 (381)
117 PRK12335 tellurite resistance 97.2 0.00021 5.4E-09 52.4 2.7 105 237-362 118-222 (289)
118 PTZ00146 fibrillarin; Provisio 97.2 0.0031 7.8E-08 43.8 8.2 117 237-380 131-258 (296)
119 COG0220 Predicted S-adenosylme 97.2 0.00057 1.5E-08 49.2 4.4 111 243-367 50-166 (227)
120 pfam02005 TRM N2,N2-dimethylgu 97.1 0.00076 1.9E-08 48.3 4.9 73 242-314 50-128 (375)
121 pfam02527 GidB rRNA small subu 97.0 0.003 7.6E-08 43.8 6.8 116 242-384 49-166 (184)
122 TIGR00537 hemK_rel_arch methyl 97.0 0.0019 4.7E-08 45.4 5.7 153 231-391 10-167 (183)
123 KOG1099 consensus 96.9 0.0018 4.7E-08 45.4 4.7 112 242-382 42-177 (294)
124 pfam04445 DUF548 Protein of un 96.8 0.0005 1.3E-08 49.6 1.6 87 229-315 61-160 (235)
125 pfam03291 Pox_MCEL mRNA cappin 96.8 0.0044 1.1E-07 42.6 6.3 118 240-365 62-187 (327)
126 COG4076 Predicted RNA methylas 96.8 0.00099 2.5E-08 47.4 2.6 100 242-362 33-132 (252)
127 COG4106 Tam Trans-aconitate me 96.7 0.002 5.2E-08 45.1 4.2 122 238-386 27-150 (257)
128 PRK00050 mraW S-adenosyl-methy 96.7 0.00089 2.3E-08 47.7 1.8 85 234-319 16-107 (309)
129 PRK11760 putative RNA 2'-O-rib 96.6 0.0013 3.3E-08 46.5 2.3 74 239-319 208-282 (356)
130 TIGR00406 prmA ribosomal prote 96.5 0.0013 3.3E-08 46.6 2.0 138 227-394 178-324 (330)
131 COG0030 KsgA Dimethyladenosine 96.5 0.0024 6.1E-08 44.6 3.1 139 221-368 9-151 (259)
132 pfam01795 Methyltransf_5 MraW 96.4 0.0016 4.2E-08 45.8 2.1 86 233-319 12-106 (310)
133 COG0286 HsdM Type I restrictio 96.4 0.0027 6.9E-08 44.1 3.1 164 220-384 165-347 (489)
134 pfam01861 DUF43 Protein of unk 96.4 0.0076 1.9E-07 40.9 5.1 110 264-382 68-194 (243)
135 pfam05219 DREV DREV methyltran 96.3 0.0059 1.5E-07 41.6 4.5 94 241-365 94-188 (265)
136 TIGR01177 TIGR01177 conserved 96.3 0.0086 2.2E-07 40.4 5.2 139 226-377 188-334 (358)
137 KOG1098 consensus 96.3 0.0026 6.7E-08 44.3 2.5 41 342-383 688-728 (780)
138 KOG1663 consensus 96.3 0.0042 1.1E-07 42.7 3.5 118 223-365 55-183 (237)
139 PRK00811 spermidine synthase; 96.3 0.031 8E-07 36.3 7.9 111 240-368 77-196 (283)
140 PRK05785 hypothetical protein; 96.3 0.0023 5.8E-08 44.7 2.0 74 240-328 50-124 (225)
141 KOG1253 consensus 96.3 0.0063 1.6E-07 41.5 4.2 75 241-315 109-192 (525)
142 smart00650 rADc Ribosomal RNA 96.2 0.0042 1.1E-07 42.8 3.2 85 233-319 5-90 (169)
143 PRK03612 spermidine synthase; 96.2 0.0067 1.7E-07 41.2 4.1 153 214-384 260-431 (516)
144 PRK04457 spermidine synthase; 96.2 0.019 4.9E-07 37.8 6.4 141 231-392 57-203 (262)
145 COG3897 Predicted methyltransf 96.2 0.0039 9.9E-08 43.0 2.8 69 241-312 79-148 (218)
146 pfam08003 Methyltransf_9 Prote 96.0 0.03 7.6E-07 36.4 6.6 120 233-374 107-228 (315)
147 COG1889 NOP1 Fibrillarin-like 96.0 0.026 6.7E-07 36.9 6.3 115 237-378 72-196 (231)
148 PHA02056 putative methyltransf 96.0 0.0052 1.3E-07 42.0 2.7 75 238-317 61-137 (279)
149 pfam00398 RrnaAD Ribosomal RNA 95.9 0.0061 1.5E-07 41.6 2.9 128 233-370 22-153 (258)
150 KOG1596 consensus 95.9 0.034 8.6E-07 36.0 6.6 120 237-382 152-281 (317)
151 pfam12147 Hydrolase_5 Putative 95.9 0.026 6.7E-07 36.9 6.0 123 242-385 136-267 (311)
152 KOG3420 consensus 95.9 0.0052 1.3E-07 42.1 2.4 87 238-328 45-133 (185)
153 KOG2361 consensus 95.9 0.0081 2.1E-07 40.6 3.2 132 214-364 47-182 (264)
154 TIGR00536 hemK_fam methyltrans 95.8 0.024 6.2E-07 37.1 5.6 139 240-378 124-276 (311)
155 TIGR00138 gidB methyltransfera 95.8 0.02 5.1E-07 37.7 5.0 110 241-376 49-164 (197)
156 pfam01564 Spermine_synth Sperm 95.7 0.088 2.3E-06 32.9 7.9 122 242-383 76-205 (240)
157 KOG4300 consensus 95.6 0.056 1.4E-06 34.4 6.8 106 237-365 72-182 (252)
158 PRK10742 putative methyltransf 95.6 0.0042 1.1E-07 42.7 1.0 86 230-315 75-173 (250)
159 TIGR00006 TIGR00006 S-adenosyl 95.6 0.0089 2.3E-07 40.3 2.6 152 234-389 20-272 (323)
160 pfam04816 DUF633 Family of unk 95.6 0.081 2.1E-06 33.2 7.4 115 247-390 3-121 (204)
161 TIGR00477 tehB tellurite resis 95.4 0.0057 1.5E-07 41.7 1.2 117 240-376 72-200 (239)
162 PRK11088 rrmA 23S rRNA methylt 95.4 0.021 5.4E-07 37.5 4.1 70 241-315 85-161 (272)
163 PRK06202 hypothetical protein; 95.2 0.026 6.7E-07 36.9 4.0 70 240-311 60-135 (233)
164 COG0275 Predicted S-adenosylme 95.1 0.012 2.9E-07 39.5 2.0 146 234-385 16-261 (314)
165 cd00315 Cyt_C5_DNA_methylase C 95.1 0.013 3.3E-07 39.1 2.2 77 243-325 1-81 (275)
166 PTZ00338 dimethyladenosine tra 95.1 0.017 4.4E-07 38.2 2.7 75 235-310 32-107 (296)
167 pfam07021 MetW Methionine bios 95.1 0.011 2.9E-07 39.5 1.8 67 239-312 11-81 (193)
168 TIGR02085 meth_trns_rumB 23S r 95.0 0.0075 1.9E-07 40.9 0.6 102 240-367 236-347 (386)
169 KOG4589 consensus 94.9 0.29 7.3E-06 29.2 8.6 120 240-384 68-200 (232)
170 PRK01581 speE spermidine synth 94.9 0.088 2.2E-06 33.0 5.9 126 242-384 140-277 (363)
171 COG0357 GidB Predicted S-adeno 94.9 0.027 6.9E-07 36.8 3.2 113 242-380 68-183 (215)
172 COG1867 TRM1 N2,N2-dimethylgua 94.7 0.012 3.1E-07 39.3 1.2 73 242-314 53-129 (380)
173 pfam10354 DUF2431 Domain of un 94.7 0.34 8.6E-06 28.6 8.4 90 283-384 49-143 (166)
174 COG0421 SpeE Spermidine syntha 94.6 0.14 3.7E-06 31.4 6.5 126 227-371 63-196 (282)
175 pfam00145 DNA_methylase C-5 cy 94.6 0.022 5.5E-07 37.5 2.2 74 244-324 2-78 (319)
176 pfam10294 Methyltransf_16 Puta 94.6 0.13 3.3E-06 31.7 6.1 116 240-383 43-167 (171)
177 COG2933 Predicted SAM-dependen 94.5 0.042 1.1E-06 35.3 3.4 68 240-314 210-278 (358)
178 pfam04989 CmcI Cephalosporin h 94.4 0.17 4.4E-06 30.8 6.4 122 240-390 31-181 (202)
179 PRK00274 ksgA dimethyladenosin 94.0 0.022 5.6E-07 37.4 1.2 82 233-320 31-116 (267)
180 KOG2899 consensus 94.0 0.063 1.6E-06 34.0 3.5 140 241-398 58-242 (288)
181 KOG1541 consensus 93.8 0.41 1E-05 28.0 7.4 138 222-383 29-174 (270)
182 KOG1975 consensus 93.8 0.057 1.5E-06 34.4 2.9 129 230-384 108-250 (389)
183 COG1568 Predicted methyltransf 93.6 0.063 1.6E-06 34.0 3.0 87 264-350 176-278 (354)
184 pfam05724 TPMT Thiopurine S-me 93.3 0.17 4.2E-06 30.9 4.7 116 237-372 18-147 (203)
185 KOG1661 consensus 93.1 0.22 5.7E-06 29.9 5.1 99 239-365 80-193 (237)
186 KOG2078 consensus 93.0 0.061 1.6E-06 34.1 2.1 147 239-385 247-420 (495)
187 TIGR00091 TIGR00091 tRNA (guan 92.9 0.056 1.4E-06 34.4 1.8 124 242-385 20-164 (216)
188 pfam05891 Hydroxy-O-Methy Puta 92.3 0.76 1.9E-05 26.0 6.9 98 243-363 57-159 (217)
189 COG0270 Dcm Site-specific DNA 92.2 0.078 2E-06 33.3 1.8 78 243-325 4-86 (328)
190 pfam10237 N6-adenineMlase Prob 91.9 0.44 1.1E-05 27.8 5.3 55 304-384 83-137 (161)
191 KOG3115 consensus 91.4 1.2 3.1E-05 24.4 7.4 175 242-445 61-248 (249)
192 COG3963 Phospholipid N-methylt 90.9 0.53 1.3E-05 27.2 4.9 108 235-367 42-158 (194)
193 pfam01234 NNMT_PNMT_TEMT NNMT/ 90.6 0.66 1.7E-05 26.5 5.2 44 345-389 179-235 (261)
194 KOG0820 consensus 90.4 0.25 6.4E-06 29.6 2.9 124 237-371 54-182 (315)
195 pfam05185 PRMT5 PRMT5 arginine 90.4 0.67 1.7E-05 26.4 5.0 99 244-362 189-294 (447)
196 PRK09880 L-idonate 5-dehydroge 90.2 0.28 7.1E-06 29.2 3.0 99 237-367 165-268 (343)
197 KOG1227 consensus 89.9 0.17 4.4E-06 30.8 1.7 77 241-317 194-273 (351)
198 PRK01544 bifunctional N5-gluta 89.8 0.4 1E-05 28.1 3.5 135 240-392 343-482 (503)
199 KOG1499 consensus 89.8 0.53 1.3E-05 27.2 4.1 108 240-371 59-173 (346)
200 KOG1709 consensus 89.7 1.1 2.7E-05 24.9 5.7 109 240-373 100-212 (271)
201 PRK00536 speE spermidine synth 89.7 0.86 2.2E-05 25.6 5.2 114 241-385 72-189 (262)
202 TIGR00308 TRM1 N2,N2-dimethylg 89.6 0.092 2.3E-06 32.8 0.1 77 239-315 92-179 (462)
203 pfam03059 NAS Nicotianamine sy 89.5 1.8 4.5E-05 23.3 6.8 110 243-381 123-239 (277)
204 COG4262 Predicted spermidine s 89.3 1.2 3.2E-05 24.4 5.8 127 242-385 290-428 (508)
205 TIGR02081 metW methionine bios 88.6 0.26 6.5E-06 29.5 1.8 69 239-314 11-91 (205)
206 PRK11524 putative methyltransf 88.5 1.3 3.4E-05 24.2 5.4 60 227-286 188-253 (284)
207 TIGR00755 ksgA dimethyladenosi 88.3 0.26 6.6E-06 29.5 1.7 125 229-370 17-162 (277)
208 PRK10309 galactitol-1-phosphat 88.1 0.28 7E-06 29.3 1.7 95 237-364 156-259 (347)
209 KOG2782 consensus 88.1 0.14 3.6E-06 31.4 0.2 43 339-384 243-285 (303)
210 PRK10083 putative dehydrogenas 88.0 0.4 1E-05 28.0 2.5 98 236-366 155-260 (339)
211 TIGR03366 HpnZ_proposed putati 87.9 0.86 2.2E-05 25.6 4.1 95 237-365 116-218 (280)
212 PRK11783 rlmL 23S rRNA m(2)G24 87.6 0.84 2.1E-05 25.7 4.0 53 264-316 261-317 (716)
213 COG1189 Predicted rRNA methyla 87.6 0.66 1.7E-05 26.5 3.4 98 240-366 78-179 (245)
214 TIGR00452 TIGR00452 methyltran 87.3 1.7 4.2E-05 23.5 5.3 121 235-377 115-239 (316)
215 TIGR03451 mycoS_dep_FDH mycoth 87.2 0.83 2.1E-05 25.7 3.7 96 237-366 172-277 (358)
216 COG1064 AdhP Zn-dependent alco 87.0 0.89 2.3E-05 25.5 3.8 132 238-385 163-303 (339)
217 KOG3010 consensus 86.8 0.33 8.5E-06 28.7 1.5 117 240-380 31-155 (261)
218 PRK05786 fabG 3-ketoacyl-(acyl 86.6 0.7 1.8E-05 26.3 3.1 119 241-366 4-136 (238)
219 pfam00891 Methyltransf_2 O-met 86.4 1.7 4.3E-05 23.4 5.0 108 240-377 100-209 (239)
220 TIGR00740 TIGR00740 methyltran 86.1 0.66 1.7E-05 26.5 2.7 142 214-382 32-184 (247)
221 TIGR03438 probable methyltrans 85.8 2.8 7.2E-05 21.8 6.3 119 241-381 63-190 (301)
222 COG0500 SmtA SAM-dependent met 85.8 2.8 7.2E-05 21.8 6.7 106 245-373 52-163 (257)
223 KOG3191 consensus 85.8 0.6 1.5E-05 26.7 2.4 134 242-385 44-185 (209)
224 PRK05396 tdh L-threonine 3-deh 84.4 1.8 4.7E-05 23.2 4.3 99 240-372 162-268 (341)
225 COG2961 ComJ Protein involved 84.1 3.4 8.6E-05 21.2 7.7 134 258-418 105-245 (279)
226 PRK06113 7-alpha-hydroxysteroi 84.0 2.8 7E-05 21.9 5.1 119 241-365 10-145 (255)
227 COG4976 Predicted methyltransf 84.0 0.8 2E-05 25.8 2.4 121 238-385 122-257 (287)
228 COG1063 Tdh Threonine dehydrog 82.8 1 2.6E-05 25.1 2.5 99 238-367 165-271 (350)
229 smart00829 PKS_ER Enoylreducta 82.2 1.6 4.1E-05 23.6 3.4 92 238-362 101-202 (288)
230 pfam11599 AviRa RRNA methyltra 81.7 3.5 9E-05 21.1 5.0 111 243-366 53-215 (249)
231 pfam06962 rRNA_methylase Putat 81.5 2.3 5.9E-05 22.4 3.9 107 265-385 1-114 (140)
232 KOG1500 consensus 81.0 3.5 9E-05 21.1 4.7 71 239-313 175-250 (517)
233 PRK06139 short chain dehydroge 80.7 4.4 0.00011 20.3 7.5 37 202-239 178-214 (324)
234 pfam06080 DUF938 Protein of un 80.4 3.4 8.8E-05 21.1 4.5 124 239-383 23-160 (201)
235 PRK08339 short chain dehydroge 79.9 4.7 0.00012 20.1 7.6 117 242-365 8-143 (263)
236 pfam03141 DUF248 Putative meth 79.6 1.1 2.9E-05 24.7 1.9 29 345-380 447-475 (506)
237 PRK06949 short chain dehydroge 79.1 2.7 6.9E-05 21.9 3.6 130 241-375 8-164 (258)
238 PRK05876 short chain dehydroge 78.9 1.4 3.6E-05 24.0 2.2 127 242-373 6-152 (275)
239 cd03115 SRP The signal recogni 78.5 5.1 0.00013 19.9 6.6 108 253-383 11-138 (173)
240 pfam00107 ADH_zinc_N Zinc-bind 78.1 2.3 5.8E-05 22.5 3.0 80 257-368 7-94 (131)
241 PRK09422 alcohol dehydrogenase 78.1 1.6 4.1E-05 23.6 2.3 94 237-364 158-260 (338)
242 PRK12826 3-ketoacyl-(acyl-carr 77.8 5.4 0.00014 19.7 6.5 122 241-368 5-143 (253)
243 pfam05971 Methyltransf_10 Prot 77.6 3.5 8.8E-05 21.1 3.8 141 241-385 65-229 (254)
244 TIGR01444 fkbM_fam methyltrans 77.5 1.3 3.3E-05 24.3 1.6 52 244-295 1-58 (142)
245 PRK13255 thiopurine S-methyltr 76.7 1.7 4.5E-05 23.3 2.1 113 237-372 33-162 (218)
246 PRK08643 acetoin reductase; Va 76.2 5.2 0.00013 19.8 4.4 29 260-288 23-51 (256)
247 COG2384 Predicted SAM-dependen 76.1 2.7 6.8E-05 22.0 2.9 121 240-389 15-139 (226)
248 PRK10867 signal recognition pa 75.9 4.4 0.00011 20.3 4.0 13 82-94 74-86 (453)
249 PRK06124 gluconate 5-dehydroge 75.6 4.4 0.00011 20.4 3.9 129 241-374 13-160 (259)
250 PRK08324 short chain dehydroge 75.1 6.3 0.00016 19.2 7.5 148 211-365 391-556 (676)
251 PRK11630 hypothetical protein; 74.8 4.3 0.00011 20.4 3.7 16 97-112 10-25 (206)
252 PRK07102 short chain dehydroge 73.7 6.8 0.00017 19.0 6.0 56 259-314 21-84 (243)
253 PRK07890 short chain dehydroge 73.7 6.8 0.00017 19.0 7.2 30 259-288 25-54 (258)
254 pfam07091 FmrO Ribosomal RNA m 73.5 3.7 9.5E-05 20.9 3.1 70 241-311 102-173 (248)
255 TIGR03201 dearomat_had 6-hydro 73.4 3.3 8.4E-05 21.3 2.8 112 237-383 162-288 (349)
256 PRK13394 3-hydroxybutyrate deh 73.3 6.9 0.00018 18.9 7.9 129 241-373 6-153 (262)
257 PRK07097 gluconate 5-dehydroge 73.1 7 0.00018 18.9 5.5 128 241-373 9-155 (265)
258 pfam01555 N6_N4_Mtase DNA meth 72.9 7.1 0.00018 18.8 5.1 43 239-281 179-221 (221)
259 PRK11519 tyrosine kinase; Prov 72.9 3.8 9.7E-05 20.8 3.0 40 240-279 524-573 (720)
260 TIGR01425 SRP54_euk signal rec 71.9 2.9 7.4E-05 21.7 2.3 133 220-384 110-260 (453)
261 PRK13699 putative methylase; P 71.8 1.7 4.3E-05 23.4 1.0 56 229-284 145-206 (227)
262 PRK11727 putative SAM-dependen 71.3 7.7 0.0002 18.6 9.5 141 241-385 117-289 (326)
263 PRK08945 short chain dehydroge 71.2 7.7 0.0002 18.6 7.8 120 241-368 12-154 (245)
264 pfam00448 SRP54 SRP54-type pro 70.7 2.6 6.7E-05 22.0 1.8 124 249-394 6-151 (196)
265 KOG3673 consensus 70.4 1.3 3.3E-05 24.2 0.2 10 362-371 750-759 (845)
266 TIGR01862 N2-ase-Ialpha nitrog 69.4 5.2 0.00013 19.8 3.1 134 225-380 303-452 (510)
267 COG4098 comFA Superfamily II D 69.1 2.5 6.4E-05 22.1 1.4 118 226-371 102-246 (441)
268 COG5459 Predicted rRNA methyla 68.7 6.1 0.00016 19.3 3.3 17 308-325 362-378 (484)
269 PRK05867 short chain dehydroge 67.4 7.4 0.00019 18.7 3.5 117 241-365 8-145 (253)
270 KOG2425 consensus 67.4 8.9 0.00023 18.1 4.0 35 120-154 105-140 (599)
271 TIGR00073 hypB hydrogenase acc 67.0 3.3 8.4E-05 21.3 1.7 142 240-384 31-221 (225)
272 PRK09291 short chain dehydroge 66.9 9.3 0.00024 17.9 7.7 29 260-288 23-51 (257)
273 PHA02518 ParA-like protein; Pr 66.1 9.6 0.00025 17.8 6.5 80 304-385 74-161 (211)
274 KOG0025 consensus 66.0 2.3 5.8E-05 22.5 0.7 54 218-289 158-211 (354)
275 PRK05565 fabG 3-ketoacyl-(acyl 65.8 9.7 0.00025 17.8 7.7 98 259-364 25-140 (247)
276 PRK12939 short chain dehydroge 65.7 9.8 0.00025 17.8 4.5 116 242-362 7-139 (250)
277 COG4555 NatA ABC-type Na+ tran 65.6 9.8 0.00025 17.8 4.4 61 305-388 150-211 (245)
278 PRK09186 flagellin modificatio 63.8 11 0.00027 17.5 6.0 27 260-286 25-51 (255)
279 pfam00827 Ribosomal_L15e Ribos 63.6 7.6 0.00019 18.6 3.0 51 280-334 102-153 (192)
280 PRK12429 3-hydroxybutyrate deh 63.5 11 0.00027 17.5 5.7 23 262-284 27-49 (258)
281 KOG1678 consensus 63.4 3.2 8.2E-05 21.4 1.0 27 305-334 128-154 (204)
282 PTZ00026 60S ribosomal protein 63.0 6.8 0.00017 18.9 2.7 27 305-334 128-154 (204)
283 PRK08277 D-mannonate oxidoredu 63.0 11 0.00028 17.4 5.5 60 241-301 9-71 (278)
284 PRK05653 fabG 3-ketoacyl-(acyl 62.9 11 0.00028 17.4 6.6 98 259-364 25-139 (246)
285 PRK06198 short chain dehydroge 62.8 11 0.00028 17.4 4.1 22 266-287 34-55 (268)
286 COG1352 CheR Methylase of chem 62.5 9.5 0.00024 17.9 3.3 23 342-364 218-240 (268)
287 PRK10610 chemotaxis regulatory 62.3 5.9 0.00015 19.4 2.3 60 263-323 5-70 (129)
288 TIGR03206 benzo_BadH 2-hydroxy 62.3 11 0.00029 17.3 7.6 113 258-375 22-150 (250)
289 TIGR02889 spore_YpeB germinati 61.5 9.9 0.00025 17.8 3.3 64 355-419 295-367 (465)
290 PRK13771 putative alcohol dehy 60.8 12 0.0003 17.2 4.4 93 237-364 158-254 (332)
291 KOG0780 consensus 60.1 12 0.00031 17.1 6.5 32 351-383 208-239 (483)
292 PRK08340 glucose-1-dehydrogena 59.8 12 0.00031 17.0 7.4 24 261-284 22-45 (259)
293 smart00138 MeTrc Methyltransfe 59.5 12 0.0003 17.2 3.4 23 342-364 219-241 (264)
294 pfam01739 CheR CheR methyltran 58.9 12 0.00031 17.1 3.4 26 341-366 149-174 (194)
295 TIGR02216 phage_TIGR02216 phag 58.1 4.8 0.00012 20.1 1.2 25 317-341 10-34 (62)
296 PRK07576 short chain dehydroge 57.5 13 0.00034 16.8 7.4 126 242-375 8-154 (260)
297 PRK10611 chemotaxis methyltran 57.5 13 0.00033 16.9 3.3 24 341-364 238-261 (287)
298 TIGR01283 nifE nitrogenase MoF 57.3 7.6 0.00019 18.6 2.1 45 150-195 223-276 (470)
299 TIGR03587 Pse_Me-ase pseudamin 57.0 13 0.00033 16.8 3.3 93 242-355 44-138 (204)
300 PRK07832 short chain dehydroge 57.0 14 0.00035 16.7 8.0 29 260-288 21-49 (272)
301 pfam06626 DUF1152 Protein of u 56.9 14 0.00035 16.7 4.0 45 344-391 174-218 (297)
302 TIGR03439 methyl_EasF probable 56.9 14 0.00035 16.7 6.4 108 240-364 75-196 (319)
303 PRK12936 3-ketoacyl-(acyl-carr 56.8 13 0.00033 16.9 3.2 38 259-300 26-63 (245)
304 PRK11091 aerobic respiration c 56.3 14 0.00036 16.6 3.5 108 263-384 525-646 (779)
305 PRK08862 short chain dehydroge 55.9 8.9 0.00023 18.1 2.3 129 241-376 4-153 (227)
306 pfam04378 DUF519 Protein of un 55.6 14 0.00036 16.6 11.5 136 258-418 74-214 (245)
307 pfam08123 DOT1 Histone methyla 55.2 9.8 0.00025 17.8 2.4 78 236-313 37-129 (205)
308 TIGR01284 alt_nitrog_alph nitr 55.0 12 0.00029 17.2 2.7 65 182-246 323-411 (468)
309 PRK08589 short chain dehydroge 54.2 13 0.00034 16.8 2.9 15 369-384 222-236 (272)
310 TIGR00057 TIGR00057 Sua5/YciO/ 54.2 13 0.00033 16.8 2.9 10 163-172 80-89 (215)
311 PRK04243 50S ribosomal protein 54.0 12 0.0003 17.1 2.6 45 288-335 110-155 (196)
312 pfam04031 Las1 Las1-like. Las1 53.8 5.2 0.00013 19.8 0.8 37 119-155 78-115 (149)
313 pfam11899 DUF3419 Protein of u 53.2 5.4 0.00014 19.7 0.8 74 272-371 260-337 (376)
314 TIGR00417 speE spermidine synt 53.0 16 0.0004 16.3 6.0 131 237-385 71-217 (284)
315 PRK06101 short chain dehydroge 52.9 7.1 0.00018 18.8 1.3 23 259-281 21-43 (241)
316 PRK08251 short chain dehydroge 52.7 16 0.0004 16.2 5.6 42 259-300 22-64 (248)
317 PRK07774 short chain dehydroge 52.7 16 0.0004 16.2 6.4 30 259-288 26-55 (250)
318 KOG1562 consensus 52.4 16 0.00041 16.2 5.2 119 242-384 122-249 (337)
319 PRK11361 acetoacetate metaboli 52.1 9.5 0.00024 17.9 1.9 13 260-272 235-247 (457)
320 TIGR00692 tdh L-threonine 3-de 52.0 5.8 0.00015 19.5 0.8 142 221-398 140-316 (341)
321 COG4635 HemG Flavodoxin [Energ 51.6 16 0.00042 16.1 7.6 88 279-386 21-113 (175)
322 PRK06125 short chain dehydroge 51.5 16 0.00042 16.1 7.4 116 241-363 6-137 (259)
323 PRK11054 helD DNA helicase IV; 51.5 7.8 0.0002 18.5 1.4 53 346-400 548-601 (684)
324 PRK10365 transcriptional regul 51.1 10 0.00026 17.7 1.9 13 260-272 231-243 (441)
325 PRK09134 short chain dehydroge 51.1 14 0.00036 16.6 2.7 20 48-67 73-92 (256)
326 cd02042 ParA ParA and ParB of 50.2 4.2 0.00011 20.5 -0.2 14 307-320 40-53 (104)
327 PRK12937 short chain dehydroge 50.0 17 0.00044 15.9 7.7 41 259-300 25-66 (245)
328 TIGR00959 ffh signal recogniti 49.8 16 0.00042 16.1 2.8 108 252-380 112-243 (439)
329 PTZ00243 ABC transporter; Prov 49.3 18 0.00045 15.9 5.0 162 220-385 1306-1493(1560)
330 PRK06731 flhF flagellar biosyn 49.0 18 0.00046 15.8 4.4 106 253-380 86-208 (270)
331 PRK08261 fabG 3-ketoacyl-(acyl 48.4 18 0.00047 15.8 7.4 146 215-369 179-342 (447)
332 PRK10841 hybrid sensory kinase 48.3 13 0.00034 16.8 2.2 16 373-388 836-851 (947)
333 PRK13256 thiopurine S-methyltr 47.6 14 0.00036 16.6 2.2 112 237-372 39-170 (226)
334 pfam05711 TylF Macrocin-O-meth 47.6 19 0.00048 15.7 6.7 93 276-391 143-237 (249)
335 pfam08399 VWA_N VWA N-terminal 46.9 5.6 0.00014 19.6 0.0 15 316-330 109-123 (123)
336 PRK05855 short chain dehydroge 46.9 19 0.00049 15.6 7.0 128 239-374 312-462 (582)
337 PRK07109 short chain dehydroge 46.8 19 0.00049 15.6 6.3 28 42-69 65-92 (338)
338 KOG3178 consensus 46.3 20 0.0005 15.5 5.1 96 243-367 179-277 (342)
339 cd01976 Nitrogenase_MoFe_alpha 46.2 20 0.0005 15.5 3.2 13 150-162 187-199 (421)
340 cd01126 TraG_VirD4 The TraG/Tr 46.0 13 0.00034 16.8 1.9 23 359-383 322-344 (384)
341 TIGR00972 3a0107s01c2 phosphat 46.0 8.6 0.00022 18.2 0.9 14 306-319 162-175 (248)
342 PRK06181 short chain dehydroge 45.8 20 0.00051 15.5 6.2 41 259-300 21-61 (263)
343 PRK07677 short chain dehydroge 45.8 20 0.00051 15.5 7.1 108 258-373 22-149 (254)
344 PRK04333 50S ribosomal protein 45.5 10 0.00026 17.6 1.2 22 308-330 31-52 (83)
345 COG0745 OmpR Response regulato 44.7 12 0.00031 17.1 1.5 17 271-287 8-24 (229)
346 PRK07791 short chain dehydroge 44.5 19 0.00049 15.6 2.5 14 370-384 227-240 (285)
347 cd02038 FleN-like FleN is a me 44.4 7.7 0.0002 18.6 0.4 14 307-320 45-58 (139)
348 PRK07062 short chain dehydroge 43.8 21 0.00054 15.3 7.2 27 259-285 28-54 (265)
349 TIGR02699 archaeo_AfpA archaeo 43.6 14 0.00036 16.6 1.7 48 225-279 111-160 (176)
350 TIGR01618 phage_P_loop phage n 43.5 16 0.00042 16.1 2.0 112 243-365 14-145 (229)
351 PRK07814 short chain dehydroge 43.4 22 0.00055 15.2 7.8 28 260-287 31-58 (263)
352 PRK10754 quinone oxidoreductas 43.4 22 0.00055 15.2 4.9 72 236-315 135-217 (327)
353 PRK12384 sorbitol-6-phosphate 43.0 22 0.00056 15.2 6.9 21 262-282 25-45 (259)
354 PRK07454 short chain dehydroge 42.6 22 0.00056 15.1 8.1 109 258-374 25-152 (241)
355 cd01121 Sms Sms (bacterial rad 42.5 9.3 0.00024 17.9 0.6 69 218-288 261-339 (372)
356 PTZ00065 60S ribosomal protein 42.4 12 0.0003 17.2 1.1 11 308-318 35-46 (130)
357 PRK08265 short chain dehydroge 42.2 22 0.00057 15.1 4.8 20 260-279 27-46 (261)
358 PRK10538 3-hydroxy acid dehydr 41.9 23 0.00058 15.1 2.8 16 369-385 208-223 (248)
359 KOG1014 consensus 41.5 23 0.00059 15.0 4.0 17 241-257 178-194 (312)
360 PRK08628 short chain dehydroge 41.4 22 0.00055 15.2 2.4 14 369-383 220-233 (258)
361 PRK12746 short chain dehydroge 41.1 23 0.00059 15.0 7.3 105 259-366 26-147 (254)
362 TIGR00064 ftsY signal recognit 41.0 14 0.00037 16.5 1.4 116 252-381 92-226 (284)
363 TIGR03652 FeS_repair_RIC iron- 40.4 7.9 0.0002 18.4 0.0 22 140-161 171-192 (216)
364 PRK11107 hybrid sensory histid 40.2 15 0.00039 16.3 1.4 53 265-320 538-590 (920)
365 PRK10923 glnG nitrogen regulat 39.8 17 0.00045 15.9 1.7 18 330-347 311-328 (469)
366 PRK10675 UDP-galactose-4-epime 39.8 24 0.00062 14.8 5.1 10 222-231 233-242 (338)
367 KOG2352 consensus 39.5 25 0.00063 14.8 7.2 119 248-380 300-431 (482)
368 PRK08305 spoVFB dipicolinate s 39.5 25 0.00063 14.8 2.8 78 298-393 76-155 (195)
369 PRK09581 pleD response regulat 39.3 15 0.00039 16.3 1.4 14 369-382 383-396 (457)
370 KOG3987 consensus 39.2 15 0.00038 16.4 1.3 94 241-364 112-206 (288)
371 TIGR01326 OAH_OAS_sulfhy O-ace 38.8 13 0.00033 16.8 0.9 14 372-385 308-321 (434)
372 PRK07035 short chain dehydroge 38.7 25 0.00064 14.7 4.9 26 261-286 30-55 (252)
373 pfam01834 XRCC1_N XRCC1 N term 38.7 17 0.00043 16.0 1.5 72 226-312 14-90 (152)
374 PRK08661 prolyl-tRNA synthetas 38.6 25 0.00065 14.7 4.4 137 243-393 253-429 (478)
375 cd03067 PDI_b_PDIR_N PDIb fami 37.3 26 0.00067 14.6 3.9 39 340-380 32-70 (112)
376 PRK06500 short chain dehydroge 36.8 27 0.00069 14.5 7.2 116 241-364 5-135 (249)
377 smart00812 Alpha_L_fucos Alpha 36.5 27 0.00069 14.5 3.1 24 343-366 318-341 (384)
378 KOG2414 consensus 36.0 28 0.0007 14.4 3.2 47 307-353 307-359 (488)
379 PRK07479 consensus 35.8 28 0.00071 14.4 6.3 41 259-300 25-65 (252)
380 PRK13435 response regulator; P 35.4 27 0.00069 14.5 2.1 106 265-385 3-119 (141)
381 PRK11823 DNA repair protein Ra 35.3 13 0.00033 16.8 0.5 69 218-288 268-346 (454)
382 PRK13849 putative crown gall t 35.2 20 0.00051 15.5 1.4 140 245-385 3-170 (231)
383 KOG1269 consensus 35.2 28 0.0007 14.4 2.1 38 347-385 295-333 (364)
384 TIGR00478 tly hemolysin A; Int 35.1 8.8 0.00022 18.1 -0.5 46 240-285 76-122 (240)
385 pfam08903 DUF1846 Domain of un 35.0 29 0.00073 14.3 3.9 69 282-353 349-421 (491)
386 PRK07041 short chain dehydroge 35.0 29 0.00073 14.3 7.6 41 258-300 26-66 (240)
387 PRK08703 short chain dehydroge 34.6 29 0.00074 14.3 7.2 119 241-366 5-147 (239)
388 TIGR02740 TraF-like TraF-like 34.5 29 0.00074 14.3 3.2 28 284-313 222-249 (306)
389 pfam00072 Response_reg Respons 34.5 18 0.00045 15.8 1.0 47 267-315 2-51 (111)
390 pfam02702 KdpD Osmosensitive K 34.3 20 0.00051 15.5 1.3 73 305-398 82-168 (211)
391 COG1117 PstB ABC-type phosphat 34.1 21 0.00054 15.3 1.4 52 306-384 167-218 (253)
392 PRK06057 short chain dehydroge 33.9 26 0.00067 14.6 1.8 23 46-68 63-85 (255)
393 COG4032 Predicted thiamine-pyr 33.9 16 0.0004 16.3 0.6 20 141-160 86-105 (172)
394 PRK07806 short chain dehydroge 33.7 30 0.00076 14.2 7.2 97 259-365 26-134 (248)
395 KOG1969 consensus 33.5 8.8 0.00022 18.1 -0.7 18 240-257 323-341 (877)
396 KOG3347 consensus 33.4 30 0.00077 14.1 2.4 110 265-383 54-166 (176)
397 pfam00799 Gemini_AL1 Geminivir 33.1 31 0.00078 14.1 2.8 27 356-382 5-31 (114)
398 PRK11517 transcriptional regul 33.0 22 0.00055 15.2 1.3 18 176-193 73-90 (223)
399 PRK07985 oxidoreductase; Provi 32.9 31 0.00078 14.1 5.5 127 241-373 48-195 (294)
400 PRK06914 short chain dehydroge 32.8 31 0.00079 14.1 7.4 17 367-383 226-242 (280)
401 PRK12745 3-ketoacyl-(acyl-carr 32.7 31 0.00079 14.1 3.9 26 44-69 65-90 (259)
402 PRK09072 short chain dehydroge 32.3 31 0.0008 14.0 7.1 20 261-280 27-46 (262)
403 TIGR00677 fadh2_euk methylenet 31.7 30 0.00075 14.2 1.8 18 147-164 122-139 (312)
404 TIGR02425 decarb_PcaC 4-carbox 31.7 32 0.00082 13.9 4.9 104 3-114 7-119 (124)
405 KOG3421 consensus 31.6 12 0.00032 17.0 -0.2 12 308-319 34-45 (136)
406 pfam06564 YhjQ YhjQ protein. T 31.4 27 0.00069 14.5 1.6 17 305-321 116-132 (244)
407 PRK08085 gluconate 5-dehydroge 31.2 33 0.00083 13.9 8.0 123 242-370 9-148 (254)
408 TIGR01974 NDH_I_L proton-trans 31.2 8 0.0002 18.4 -1.2 27 48-74 602-628 (691)
409 PRK12809 putative oxidoreducta 31.1 33 0.00084 13.9 2.9 156 147-322 228-406 (639)
410 KOG0781 consensus 30.9 7.9 0.0002 18.4 -1.2 118 244-382 379-521 (587)
411 cd05565 PTS_IIB_lactose PTS_II 30.8 25 0.00064 14.8 1.3 52 244-313 2-54 (99)
412 pfam06859 Bin3 Bicoid-interact 30.1 34 0.00087 13.8 2.7 19 345-363 24-42 (110)
413 COG4152 ABC-type uncharacteriz 30.0 34 0.00087 13.7 4.1 17 305-321 147-163 (300)
414 PRK12743 acetoin dehydrogenase 29.9 34 0.00088 13.7 4.9 24 45-68 63-86 (253)
415 KOG3350 consensus 29.7 13 0.00033 16.9 -0.4 91 222-324 53-153 (217)
416 smart00448 REC cheY-homologous 29.6 26 0.00065 14.7 1.2 50 265-316 2-54 (55)
417 cd03466 Nitrogenase_NifN_2 Nit 29.5 35 0.00089 13.7 2.7 12 373-384 360-371 (429)
418 PRK10643 DNA-binding transcrip 29.5 25 0.00063 14.8 1.1 25 270-294 184-209 (222)
419 PRK09836 DNA-binding transcrip 29.3 27 0.0007 14.5 1.3 15 178-192 76-90 (226)
420 PRK12825 fabG 3-ketoacyl-(acyl 29.2 35 0.0009 13.7 6.9 40 259-299 27-67 (250)
421 pfam02977 CarbpepA_inh Carboxy 29.1 19 0.0005 15.6 0.5 20 351-370 21-40 (40)
422 PRK07478 short chain dehydroge 29.1 35 0.0009 13.6 7.5 41 259-300 26-66 (254)
423 PRK07063 short chain dehydroge 28.8 36 0.00091 13.6 6.8 27 43-69 66-92 (259)
424 TIGR02767 TraG-Ti Ti-type conj 28.4 36 0.00092 13.6 2.1 65 249-315 226-299 (641)
425 pfam09033 DFF-C DNA Fragmentat 28.4 9.3 0.00024 17.9 -1.2 10 310-319 50-59 (164)
426 PRK10463 hydrogenase nickel in 28.1 37 0.00093 13.5 6.3 74 307-383 208-286 (290)
427 cd01974 Nitrogenase_MoFe_beta 27.9 37 0.00094 13.5 2.6 24 360-383 328-351 (435)
428 cd01981 Pchlide_reductase_B Pc 27.9 37 0.00094 13.5 3.6 16 375-390 360-375 (430)
429 PRK05717 oxidoreductase; Valid 27.4 38 0.00096 13.4 3.4 25 44-68 66-90 (255)
430 PRK11749 putative oxidoreducta 27.4 34 0.00087 13.7 1.5 81 238-323 136-237 (460)
431 PRK06227 consensus 27.2 38 0.00097 13.4 7.4 27 261-287 27-53 (256)
432 TIGR02154 PhoB phosphate regul 27.2 27 0.00069 14.5 1.0 26 269-297 195-221 (226)
433 PRK09496 trkA potassium transp 27.0 37 0.00095 13.5 1.6 49 259-312 250-303 (455)
434 TIGR00759 aceE 2-oxo-acid dehy 27.0 24 0.00061 14.9 0.7 85 345-433 757-847 (905)
435 TIGR00274 TIGR00274 glucokinas 26.9 38 0.00098 13.4 2.2 15 305-319 213-227 (291)
436 PRK07666 fabG 3-ketoacyl-(acyl 26.7 39 0.00099 13.3 7.7 125 241-373 5-151 (238)
437 TIGR01968 minD_bact septum sit 26.5 31 0.0008 14.0 1.2 65 218-294 187-254 (272)
438 PRK07583 cytosine deaminase; V 26.5 35 0.0009 13.7 1.4 28 302-330 386-413 (437)
439 PRK13557 histidine kinase; Pro 26.4 36 0.00091 13.6 1.5 50 264-315 414-467 (538)
440 pfam03721 UDPG_MGDP_dh_N UDP-g 26.4 39 0.001 13.3 5.6 111 259-385 19-138 (185)
441 pfam07015 VirC1 VirC1 protein. 26.3 31 0.00079 14.1 1.1 141 245-385 3-170 (231)
442 KOG2920 consensus 26.3 21 0.00054 15.3 0.3 66 240-312 115-181 (282)
443 PRK06194 hypothetical protein; 25.8 40 0.001 13.2 5.5 28 348-379 243-270 (301)
444 PRK06935 2-deoxy-D-gluconate 3 25.8 40 0.001 13.2 3.1 14 369-383 225-238 (258)
445 pfam01959 DHQS 3-dehydroquinat 25.7 39 0.001 13.3 1.6 57 218-274 202-262 (343)
446 PRK06200 2,3-dihydroxy-2,3-dih 25.7 40 0.001 13.2 4.0 38 259-300 26-63 (263)
447 COG1861 SpsF Spore coat polysa 25.6 40 0.001 13.2 4.3 60 304-386 168-228 (241)
448 PRK07523 gluconate 5-dehydroge 25.6 40 0.001 13.2 3.2 20 261-280 31-50 (251)
449 pfam06801 consensus 25.6 23 0.00059 15.0 0.4 10 361-370 87-96 (96)
450 PRK12747 short chain dehydroge 25.4 41 0.001 13.2 2.8 11 351-361 130-140 (252)
451 cd00537 MTHFR Methylenetetrahy 25.4 41 0.001 13.2 6.9 34 265-298 64-97 (274)
452 PRK09959 hybrid sensory histid 25.1 41 0.0011 13.1 1.7 50 264-315 959-1011(1197)
453 COG0685 MetF 5,10-methylenetet 24.9 42 0.0011 13.1 2.7 120 264-385 82-227 (291)
454 COG2984 ABC-type uncharacteriz 24.8 42 0.0011 13.1 3.4 118 251-386 156-283 (322)
455 PRK13663 hypothetical protein; 24.6 42 0.0011 13.1 4.1 33 325-357 394-426 (493)
456 KOG4174 consensus 24.5 42 0.0011 13.1 6.0 93 281-384 109-207 (282)
457 PRK10458 DNA cytosine methylas 24.4 42 0.0011 13.1 3.2 23 195-217 167-189 (470)
458 pfam11219 DUF3014 Protein of u 24.4 18 0.00047 15.8 -0.3 40 325-383 116-155 (158)
459 COG0541 Ffh Signal recognition 24.4 42 0.0011 13.1 3.6 19 62-80 51-70 (451)
460 cd00156 REC Signal receiver do 24.4 40 0.001 13.2 1.4 48 269-318 3-53 (113)
461 KOG3349 consensus 24.4 39 0.00098 13.4 1.3 19 353-371 121-139 (170)
462 PRK05875 short chain dehydroge 24.3 42 0.0011 13.0 7.1 25 45-69 70-94 (277)
463 cd06371 PBP1_sensory_GC_DEF_li 24.3 42 0.0011 13.1 1.5 18 353-380 312-329 (382)
464 PRK06346 consensus 23.9 43 0.0011 13.0 8.1 42 259-301 25-66 (251)
465 COG2103 Predicted sugar phosph 23.9 43 0.0011 13.0 4.2 15 304-318 215-229 (298)
466 KOG0725 consensus 23.6 44 0.0011 12.9 6.8 29 259-287 28-56 (270)
467 TIGR00507 aroE shikimate 5-deh 23.5 44 0.0011 12.9 2.2 92 237-329 116-212 (286)
468 COG1066 Sms Predicted ATP-depe 23.4 39 0.00099 13.3 1.2 68 219-288 272-349 (456)
469 KOG0024 consensus 23.4 28 0.00072 14.4 0.5 49 233-281 161-212 (354)
470 PRK05866 short chain dehydroge 23.3 44 0.0011 12.9 5.9 106 258-365 59-177 (290)
471 PRK02472 murD UDP-N-acetylmura 23.2 31 0.00079 14.1 0.6 76 234-312 1-78 (450)
472 KOG0822 consensus 23.1 30 0.00076 14.2 0.5 55 255-310 387-443 (649)
473 PRK04946 hypothetical protein; 23.1 45 0.0011 12.9 1.7 33 412-444 145-178 (181)
474 PRK12723 flagellar biosynthesi 23.0 45 0.0011 12.9 2.6 82 254-347 186-283 (388)
475 TIGR03029 EpsG chain length de 23.0 40 0.001 13.3 1.1 12 304-315 210-221 (274)
476 cd03470 Rieske_cytochrome_bc1 22.9 37 0.00094 13.5 1.0 47 321-367 18-70 (126)
477 PRK07831 short chain dehydroge 22.8 45 0.0012 12.8 6.5 102 258-362 36-152 (261)
478 pfam05063 MT-A70 MT-A70. MT-A7 22.7 43 0.0011 13.0 1.3 9 307-315 1-9 (176)
479 PRK06603 enoyl-(acyl carrier p 22.6 46 0.0012 12.8 5.3 123 241-365 7-146 (260)
480 TIGR02800 propeller_TolB Tol-P 22.6 24 0.0006 14.9 -0.1 51 223-279 230-287 (439)
481 KOG3124 consensus 22.6 26 0.00067 14.6 0.2 35 247-281 225-266 (267)
482 cd02036 MinD Bacterial cell di 22.5 22 0.00057 15.1 -0.2 53 254-317 12-73 (179)
483 PRK09019 translation initiatio 22.3 39 0.00099 13.3 1.0 10 356-365 3-12 (108)
484 PRK10816 DNA-binding transcrip 22.2 42 0.0011 13.1 1.1 50 265-314 2-52 (223)
485 cd02035 ArsA ArsA ATPase funct 22.2 46 0.0012 12.8 1.5 15 304-318 111-125 (217)
486 pfam02442 L1R_F9L Lipid membra 22.2 45 0.0011 12.9 1.3 46 224-269 101-154 (202)
487 PRK08263 short chain dehydroge 22.2 47 0.0012 12.7 5.8 101 258-365 22-135 (275)
488 PRK08267 short chain dehydroge 21.8 47 0.0012 12.7 6.8 99 258-362 20-132 (258)
489 KOG1429 consensus 21.6 45 0.0011 12.9 1.2 101 259-371 47-147 (350)
490 TIGR01007 eps_fam capsular exo 21.5 45 0.0011 12.9 1.2 12 304-315 128-139 (207)
491 pfam00106 adh_short short chai 21.3 48 0.0012 12.6 3.1 105 258-365 19-134 (167)
492 PRK13856 two-component respons 21.3 47 0.0012 12.7 1.3 49 265-313 3-52 (241)
493 PRK10046 dpiA two-component re 21.2 48 0.0012 12.6 2.2 54 260-313 1-57 (225)
494 TIGR02852 spore_dpaB dipicolin 21.2 49 0.0012 12.6 1.5 17 301-318 74-90 (188)
495 PRK13984 putative oxidoreducta 21.1 49 0.0012 12.6 3.7 152 147-312 202-374 (604)
496 COG2204 AtoC Response regulato 21.1 49 0.0012 12.6 1.7 54 260-313 1-55 (464)
497 PRK06114 short chain dehydroge 21.1 49 0.0012 12.6 7.0 131 227-362 2-149 (262)
498 TIGR02793 nikR nickel-responsi 21.1 49 0.0012 12.6 3.7 30 60-92 12-41 (130)
499 pfam09189 DUF1952 Domain of un 21.1 49 0.0012 12.6 1.5 14 148-161 9-22 (78)
500 PRK13822 conjugal transfer cou 21.0 49 0.0012 12.6 2.1 63 250-315 230-299 (645)
No 1
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=0 Score=837.26 Aligned_cols=410 Identities=30% Similarity=0.482 Sum_probs=366.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 77846999999999999955998899999985112321689889999999999999608999999999842881004889
Q gi|254780666|r 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 (445)
Q Consensus 2 ~~~~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~ 81 (445)
|+++|+|.+|+++|.+|+.+|++++.+|+... ..|+++||+|+++||||++||+++||++|++++++|++..++.
T Consensus 1 ~~~~n~R~~A~~~L~~v~~~g~~~~~~L~~~~-----~~l~~~Dr~l~~elvyG~lR~~~~LD~il~~~~~~p~~~~~~~ 75 (428)
T PRK10901 1 KKQYNLRSIAAQAVEQVVEQGQSLSNVLPPLQ-----QKVSDKDKALLQELCFGVLRTLSQLEWLINKLMARPMTGKQRT 75 (428)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99764999999999999986992999999987-----0599988999999999999768999999999837998543479
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCC---HHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999999999868997332562258775225875544444310221100111100---0001231299789999884
Q gi|254780666|r 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL---QRIAGISIIPEWFKERLEN 158 (445)
Q Consensus 82 ~~~iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~~---~~l~~~~s~P~Wl~~~~~~ 158 (445)
++++||+|+|||+|+++|+||||||+||++|..+. .+.+||||||||++.|+..++. ...+..||||.||+++|.+
T Consensus 76 v~~lLrlg~yQll~~~iP~~AaVne~Ve~ak~~~~-~~~~glVNAVLR~~~r~~~~~~~~~~~~~~~~s~P~Wlv~~~~~ 154 (428)
T PRK10901 76 VHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKR-PQLKGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQK 154 (428)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCHHHHHHHHH
T ss_conf 99999999999961799951479899999986166-30467889999998604321103324621243098789999999
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEC---CCHHHHHHHHHHHHCC-------CCCCEECCCCCCHHHCHHHHHCCCEECCC
Q ss_conf 1267999999996146983667615---9989999864321023-------56611104567855585011001013463
Q gi|254780666|r 159 FYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228 (445)
Q Consensus 159 ~~G~~~~~~l~~~~~~p~~l~i~~k---~~~~~~~~~L~~~~~~-------~~~~~~~~~~~~i~~~~~f~eG~~~VQD~ 228 (445)
.||+ +++.++++++++|++.+|+| ++++++.+.|...++. +.++++.. +.++..+++|++|+|+|||+
T Consensus 155 ~~~~-~~~~ll~a~n~~pp~~lRvN~~k~~~~~~~~~L~~~gi~~~~~~~~~~~l~l~~-~~~i~~l~~f~~G~~~VQD~ 232 (428)
T PRK10901 155 AYPE-QWQSIVEANNQRPPMWLRVNRTHHSRDEWLALLEEAGMKGFPHPDYPDAVRLET-PAPVHALPGFEEGWVTVQDA 232 (428)
T ss_pred HHHH-HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECC-CCCHHHCCCCCCCEEEEECH
T ss_conf 7589-999999960899983788357769999999999858997352688997699879-99811081001681898172
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CC
Q ss_conf 2123222356321331003556447000010--256841000105967987765443204887417720774457---74
Q gi|254780666|r 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY---CP 303 (445)
Q Consensus 229 aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~---~~ 303 (445)
|||+++.+|+|++|++|||+||||||||+|| |.++|.|+|+|+|++|++.+++|++|+|+. +.+.++|++.+ .+
T Consensus 233 aSql~~~ll~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~-~~v~~~d~~~~~~~~~ 311 (428)
T PRK10901 233 SAQGCVTLLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCG 311 (428)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHCC
T ss_conf 767899864988898798716887668999999645892899969888999999999975997-3999776557233134
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
..+||+|||||||||+||||||||+||+++++|+.+++.+|.+||++|+++|||||+||||||||++||||+||++||++
T Consensus 312 ~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~~ 391 (428)
T PRK10901 312 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQR 391 (428)
T ss_pred CCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 45678799758988872444685421128999999999999999999998668898899998999957789999999985
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 8874178137632335566434558688089887632355777888631466765412
Q gi|254780666|r 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 (445)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~ 441 (445)
|| ++++.+.... ..+.++++|| .||+||||+|+|+|.
T Consensus 392 ~~-d~~l~~~~~~------------~~~~~~~~P~--------~~~~DGFf~a~L~kk 428 (428)
T PRK10901 392 TP-DAELCETGTP------------EQPGKQNLPG--------AEEGDGFFYAKLIKK 428 (428)
T ss_pred CC-CCEECCCCCC------------CCCCEEECCC--------CCCCCCEEEEEEEEC
T ss_conf 99-9786067788------------9998788999--------999873799999849
No 2
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=100.00 E-value=0 Score=791.97 Aligned_cols=422 Identities=33% Similarity=0.457 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 999999999999559988-9999998511232168988999999999999960899999999984288100488999999
Q gi|254780666|r 8 RLVSSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL 86 (445)
Q Consensus 8 R~~A~~iL~~v~~~~~~~-~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~~~~iL 86 (445)
|.+|+++|.+|+..+++. +.+++..++. ..+|++||+|++||||||+|.+.+||++|++++.||++...+.++-+|
T Consensus 1 R~~A~~~l~~V~~~~~sys~~~~~~~~~~---~~ls~~dr~Ll~ELvyGv~r~~~~Ld~li~~L~~kP~~~k~~~~~r~l 77 (487)
T TIGR00563 1 RDIAAEALIQVLEQGQSYSNLLPDLVLKQ---NELSDQDRRLLTELVYGVLRRLRALDYLIKKLIDKPLKGKPRVVHRLL 77 (487)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 95789999999731551456789988630---578830032311122232135045789999974178888748999999
Q ss_pred HHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC-------CHHHHHHHCCCHHHHH-HHH
Q ss_conf 9999999986-899733256225877522587554444431022110011110-------0000123129978999-988
Q gi|254780666|r 87 RVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKE-RLE 157 (445)
Q Consensus 87 r~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~-------~~~l~~~~s~P~Wl~~-~~~ 157 (445)
++++||+.|+ +||+||||||+||+||.. +.+.+++|||||||++.|++... ...+...||||+||++ .|.
T Consensus 78 ~L~ly~~~yl~~vP~~AAv~e~V~~Ak~~-g~~~l~~lVNGvLR~~qR~~~~~~~~l~~~~~~~~~~y~hP~WL~~~l~~ 156 (487)
T TIGR00563 78 RLVLYQQLYLERVPAHAAVNEAVELAKAL-GLKGLKGLVNGVLRRFQREQVQSKDELLAEVRKLAEEYSHPEWLVKKLKK 156 (487)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999975078246788998999971-67522367888888886035765547888987411233586899999987
Q ss_pred HCCCHHHHHHHHHHHCCCCCEEEEE---CCCHHHHHHHHHHHHC-------CCCCCEECC----------------CCCC
Q ss_conf 4126799999999614698366761---5998999986432102-------356611104----------------5678
Q gi|254780666|r 158 NFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVML-------PTGGIRLKE----------------LPES 211 (445)
Q Consensus 158 ~~~G~~~~~~l~~~~~~p~~l~i~~---k~~~~~~~~~L~~~~~-------~~~~~~~~~----------------~~~~ 211 (445)
..||.++++.|++++|++|+.++|+ |++++++...|.+..+ -+.++|+.. .|..
T Consensus 157 ~~~~~~~~E~i~~~~nq~P~~~LRvN~~k~~r~~~~~~L~e~nltttamaGlPqGlrlGG~~~~~~~~~pdAv~L~~p~~ 236 (487)
T TIGR00563 157 AYPGKWEAESICEANNQKPPMWLRVNQLKASREELLDLLAEENLTTTAMAGLPQGLRLGGIEGEKGDLAPDAVKLEKPIA 236 (487)
T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHCCCCCH
T ss_conf 24475578999998677778440213003458999999988543577763276540435614556666145664046523
Q ss_pred HHHCHHH-----HHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf 5558501-----10010134632123222356321331003556447000010---256841000105967987765443
Q gi|254780666|r 212 IVSLPGF-----AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 (445)
Q Consensus 212 i~~~~~f-----~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~ 283 (445)
+..+|+| .||+|+|||.|||+++.+|+|+++|.|||+||||||||+|| |.++|.|+|.|++.+|++++++|+
T Consensus 237 ~~~lp~fnGevseeGwvTvQD~Saq~va~~L~P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~ 316 (487)
T TIGR00563 237 VTKLPGFNGEVSEEGWVTVQDASAQWVATLLDPKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENL 316 (487)
T ss_pred HHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 44377978723168532132168999999738898874773114845704767742479720898862125788999999
Q ss_pred HCCCCCCEEEEECCCC--CCC---CC-C----CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2048874177207744--577---43-4----476689616742110011011033328866778899999999999998
Q gi|254780666|r 284 DRLHLYAEDIIEMDAF--DYC---PK-K----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 (445)
Q Consensus 284 ~R~g~~~~~~~~~D~~--~~~---~~-~----~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~ 353 (445)
+|||+..+.+...|++ ... .+ + +||||||||||||+||||||||+||++++.|+.+|+++|.+||..-|.
T Consensus 317 ~RLGl~~i~~~~~~~~~~~~~~W~~e~~ksaa~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP 396 (487)
T TIGR00563 317 DRLGLTIIKVEEVDGDKAGPKEWLAEVEKSAAQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAP 396 (487)
T ss_pred HHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 86188378877202567766544452010233314215607877443300178755566856517899999999998856
Q ss_pred HCCCCCEEEEEECCCCHHHCHHHHHHHH-----HHC-----CCCEEEC-CCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 6089828999774788343999899999-----968-----8741781-3763233556643455868808988763235
Q gi|254780666|r 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSS-----PIPVELV-PLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 (445)
Q Consensus 354 ~lk~gG~lvYsTCSi~~eEne~vV~~fL-----~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~ 422 (445)
.||+||.|||||||++|+||++||++|| ++| ++.+... +++..+..+... ...-..|.++++||.
T Consensus 397 ~vK~GGtLvYsTCt~~p~EN~~qI~aFL~~~A~~e~cetGt~dW~sepPdlsfE~~~P~~~-~~~~~~g~lq~LP~~--- 472 (487)
T TIGR00563 397 LVKKGGTLVYSTCTVLPEENEEQIEAFLNATADQEHCETGTEDWLSEPPDLSFEKRLPEKV-TESVRSGGLQILPHA--- 472 (487)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC-CCCCCCCCCCCCCCC---
T ss_conf 5357975888614588443289999997653557875158743357888741002377888-986223630106888---
Q ss_pred CCCCCCCCCEEEEEEEEECC
Q ss_conf 57778886314667654127
Q gi|254780666|r 423 IDGVSSGMDGFFAVALRRLI 442 (445)
Q Consensus 423 ~~~~~~g~DGFF~A~l~k~~ 442 (445)
+++||||+|.|+|.+
T Consensus 473 -----~~~DGFFiA~L~Kka 487 (487)
T TIGR00563 473 -----EEGDGFFIAKLKKKA 487 (487)
T ss_pred -----CCCCCEEEEEEECCC
T ss_conf -----787741552110379
No 3
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=597.55 Aligned_cols=334 Identities=37% Similarity=0.581 Sum_probs=280.2
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHH---HHHCCCHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 9973325622587752258755444443102211001111000001---2312997899998841267999999996146
Q gi|254780666|r 98 VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA---GISIIPEWFKERLENFYGKERVLAISDACIS 174 (445)
Q Consensus 98 ~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~~~~l~---~~~s~P~Wl~~~~~~~~G~~~~~~l~~~~~~ 174 (445)
+|+|++++++|+.++........++|+|++||++.|.......... ..|++|+|++++|.+.||.++++.++.+++.
T Consensus 1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~ 80 (355)
T COG0144 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEEILRPAFRYSHPEWLVEKLPDALGEDEAEAIAAALLR 80 (355)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_conf 97266778878898862101244433346787532000245555302011220639999999988264479999997156
Q ss_pred CCCEEEEEC---CCHHHHHHHHHHHHCCC-------CCCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 983667615---99899998643210235-------66111045678555850110010134632123222356321331
Q gi|254780666|r 175 PLYIDLTVK---FDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 (445)
Q Consensus 175 p~~l~i~~k---~~~~~~~~~L~~~~~~~-------~~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~~~g~~ 244 (445)
+++..+|+| .+.+++.+.|...++.. ..+++ ..+..+..+++|++|+|+|||+|||+++.+|+|+||++
T Consensus 81 ~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~ 159 (355)
T COG0144 81 PPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRI-EASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGER 159 (355)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE-ECCCCCCCCHHHCCEEEEEECHHHHHHHHHCCCCCCCE
T ss_conf 88725775264478789999864425534466655645897-15887656835604489996778766799719999796
Q ss_pred EECCCCCCCCCEEEE---CCCCCCH-HHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCEEEECCCC
Q ss_conf 003556447000010---2568410-0010596798776544320488741772077445774----3447668961674
Q gi|254780666|r 245 VLDLCAAPGGKTAQL---IVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPC 316 (445)
Q Consensus 245 VLD~CAAPGGKT~~l---~~~~~~i-~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~iLlDaPC 316 (445)
||||||||||||+|| |.+.|.+ +|+|++++|++.+++|++|+|+.|+.+++.|++.... ..+||+|||||||
T Consensus 160 VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPC 239 (355)
T COG0144 160 VLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPC 239 (355)
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 88807999769999999668998769974498789999999999719983489951330143113455777859987999
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 21100110110333288667788999999999999986089828999774788343999899999968874178137632
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~ 396 (445)
||+||||||||++|+.+++++.+++.+|++||.+|+++|||||+|||||||+++||||+||++||++|+ ++++.+....
T Consensus 240 Sg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~-~~~~~~~~~~ 318 (355)
T COG0144 240 SGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP-DFELEPVRLP 318 (355)
T ss_pred CCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHCC-CCEEECCCCC
T ss_conf 877113358123203899999999999999999999844879889999023750028899999998589-9544114455
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 3355664345586880898876323557778886314667654127
Q gi|254780666|r 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 (445)
Q Consensus 397 ~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~~ 442 (445)
+........ ....+++|++|| .|++||||+|+|+|..
T Consensus 319 ~~~~~~~~~-~~~~~~~r~~p~--------~~~~dGFFia~l~k~~ 355 (355)
T COG0144 319 WGPLFEGLG-SELGKTRRLYPH--------VHGTDGFFIAKLRKKR 355 (355)
T ss_pred CCCCCCCCC-CCCCCEEEECCC--------CCCCCCEEEEEEEECC
T ss_conf 444444445-455661786787--------7897867999999679
No 4
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=0 Score=530.47 Aligned_cols=286 Identities=25% Similarity=0.456 Sum_probs=244.0
Q ss_pred HCCCHHHHHHHHHCCCHH-HHHHHHHHHCCCCCEEEEEC---CCHHHHHHHHHHH-------HCCCCCCEECCC---CCC
Q ss_conf 129978999988412679-99999996146983667615---9989999864321-------023566111045---678
Q gi|254780666|r 146 SIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLTVK---FDIETWAHKLNAV-------MLPTGGIRLKEL---PES 211 (445)
Q Consensus 146 ~s~P~Wl~~~~~~~~G~~-~~~~l~~~~~~p~~l~i~~k---~~~~~~~~~L~~~-------~~~~~~~~~~~~---~~~ 211 (445)
..+|.||++++...+|.+ +.+.++++++.|++..+|+| .+++.+.+.+... .+.+.++.+... ...
T Consensus 2 ~~LP~~F~~~~~~llg~~~~~~~fl~~~~~p~~~~lRvN~lK~~~~~~~~~l~~~g~~~~pvpw~~~g~~~~~~~~~~~~ 81 (471)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPKGWTLTPIPWCEEGFWIERDDEDALP 81 (471)
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 76839999999998678403999999856998865986798799999999877659963226867870698415545678
Q ss_pred HHHCHHHHHCCCEECCCCCCCCCCCC--CCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 55585011001013463212322235--6321331003556447000010---256841000105967987765443204
Q gi|254780666|r 212 IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 (445)
Q Consensus 212 i~~~~~f~eG~~~VQD~aSql~~~~l--~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~ 286 (445)
+..++.|..|.|||||+|||+++.+| +|+||++||||||||||||+|| |.++|.|+|+|++.+|++.+++|++|+
T Consensus 82 lg~~~~~~aG~~yiQe~ssm~~~~~l~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~ 161 (471)
T PRK11933 82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRC 161 (471)
T ss_pred CCCCHHHHCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 88983664854999776885578885248899998999577854899999997589966999838899999999999971
Q ss_pred CCCCEEEEECCCCCCCC--CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 88741772077445774--3447668961674211001101103332886677889999999999999860898289997
Q gi|254780666|r 287 HLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 287 g~~~~~~~~~D~~~~~~--~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
|+.|+.+.+.|++.+.. .+.||+|||||||||+||+||+||++|+.+++++.+++.+|++||.+|+.+|||||+||||
T Consensus 162 G~~n~~vt~~d~~~~~~~~~~~FD~ILvDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYS 241 (471)
T PRK11933 162 GVSNVALTHFDGRVFGAALPEMFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (471)
T ss_pred CCCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99847999358667403230106679987888887335559757641898799999999999999999873889689998
Q ss_pred ECCCCHHHCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 747883439998999999688741781376323355664345586880898876323557778886314667654127
Q gi|254780666|r 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 (445)
Q Consensus 365 TCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~~ 442 (445)
|||+.|||||+||++||++||+.+++.++..... +......++|++|+|||.. .++|||+|+|+|.+
T Consensus 242 TCT~~peENE~vv~~~l~~~p~~v~~~~l~~~~p---~~~~~~~~~g~~RlwPH~~--------~GEGhF~A~LrK~~ 308 (471)
T PRK11933 242 TCTLNREENQAVCLWLKETYGDAVEFESLGDLFP---GAEKALTEEGFLHVFPQIY--------DSEGFFVARLRKTA 308 (471)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCC---CCCCCCCCCCCEEECCCCC--------CCCCEEEEEEEECC
T ss_conf 1799956679999999986886331033444577---7544567677478688865--------87744999998657
No 5
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=100.00 E-value=0 Score=520.81 Aligned_cols=261 Identities=35% Similarity=0.514 Sum_probs=228.5
Q ss_pred HHHHHCCCCCEEEEE---CCCHHHHHHHHHHHHCC-------CCCCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCC
Q ss_conf 999614698366761---59989999864321023-------56611104567855585011001013463212322235
Q gi|254780666|r 168 ISDACISPLYIDLTV---KFDIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 (445)
Q Consensus 168 l~~~~~~p~~l~i~~---k~~~~~~~~~L~~~~~~-------~~~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l 237 (445)
+++++|+|+|+.+|+ |++++++.+.|+..++. +.++.+...+.++..+++|++|+|+|||+|||+++.+|
T Consensus 1 il~a~n~~~p~~lRvN~lk~~~e~~~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~vQD~aS~l~~~~L 80 (277)
T pfam01189 1 ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLPYSIGSLPPFENGAVTVQDASSQLDAIAL 80 (277)
T ss_pred CHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCHHHHCCEEEEECHHHHHHHHHH
T ss_conf 94440999985999768769999999999877995898889987179726887812192655917999880677899971
Q ss_pred CCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---CCCCCEEE
Q ss_conf 6321331003556447000010---25684100010596798776544320488741772077445774---34476689
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVL 311 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---~~~fD~iL 311 (445)
+|+||++|||+||||||||+|| |.++|.|+|+|++++|++.+++|++|+|+.++.+...|++.... ...||+||
T Consensus 81 ~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~fD~vL 160 (277)
T pfam01189 81 NPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEFDRIL 160 (277)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 88999989883678881699999875898779983797899999999999759974799966444557434666665799
Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEC
Q ss_conf 61674211001101103332886677889999999999999860898289997747883439998999999688741781
Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 (445)
Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~ 391 (445)
|||||||+||||||||++|+.+++++.+++++|++||++|+++|||||+|||||||+++||||+||++||++|| ++++.
T Consensus 161 vDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eENe~vV~~fL~~~~-~~~~~ 239 (277)
T pfam01189 161 LDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQKRP-DVELV 239 (277)
T ss_pred ECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC-CCEEE
T ss_conf 72898898634558531211999999999999999999999971769989999499998998999999998699-98990
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 376323355664345586880898876323557778886314667654
Q gi|254780666|r 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 (445)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~ 439 (445)
+......... ......++++|+||| .|||||||+|+||
T Consensus 240 ~~~~~~~~~~--~~~~~~~~~~r~~P~--------~~~~dGFF~A~Lr 277 (277)
T pfam01189 240 PTGLSEGKIA--LAKRIVKGGLQSLPH--------ELNRDGFFFAKLR 277 (277)
T ss_pred CCCCCCCCCC--CCCCCCCCEEEECCC--------CCCCCCEEEEEEC
T ss_conf 4666545433--345577990798989--------9997727999859
No 6
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=100.00 E-value=0 Score=492.22 Aligned_cols=255 Identities=33% Similarity=0.541 Sum_probs=221.4
Q ss_pred EEEE-ECCCHHHHHHHHHHHHCC--------CCCC--EECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCCC--CCCC
Q ss_conf 6676-159989999864321023--------5661--1104567855585011001013463212322235632--1331
Q gi|254780666|r 178 IDLT-VKFDIETWAHKLNAVMLP--------TGGI--RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL--NNLS 244 (445)
Q Consensus 178 l~i~-~k~~~~~~~~~L~~~~~~--------~~~~--~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~~--~g~~ 244 (445)
+|+| +|++.+.+.+.|...++. +..+ ++.+.+.++..||+|.-|+|++|+.|||+|+.+|.|. ++++
T Consensus 1 IRvNTLKi~~~~l~~~L~~~G~~LtP~p~~~~~~~~~~v~~s~~~iG~tPEyL~G~y~~q~aSSmiPp~aL~p~Gn~~~~ 80 (284)
T TIGR00446 1 IRVNTLKIEVEDLLERLENRGVKLTPKPTCEEGFFIEEVKESPLSIGSTPEYLLGYYYVQEASSMIPPLALEPEGNEKER 80 (284)
T ss_pred CCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCE
T ss_conf 90012125889999887744700067220027427765402677646516788537899878736760301778768887
Q ss_pred EECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCC----CCEEEECCCC
Q ss_conf 003556447000010---25684100010596798776544320488741772077445774-344----7668961674
Q gi|254780666|r 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL----FDAVLVDAPC 316 (445)
Q Consensus 245 VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~----fD~iLlDaPC 316 (445)
||||||||||||+|| |+|.|-|+|+|++..|++.|..|++|+|+.|+.+++.|+|.+.. ..+ ||+|||||||
T Consensus 81 vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~DgR~f~~~~~~~eifFD~iLLDAPC 160 (284)
T TIGR00446 81 VLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGVLNVAVINVDGRKFGAVVLKMEIFFDRILLDAPC 160 (284)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCEEEEEEEEECCCC
T ss_conf 99974088964899999865885189973763410667865556210033324137630012314430343214525787
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE--
Q ss_conf 21100110110333288667788999999999999986089----828999774788343999899999968874178--
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL-- 390 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~----gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~-- 390 (445)
||.|+|+|+|+.+-..+++|+..++.+|++||..|.+.||+ ||.|||||||+.+||||.||+.+|++.|+.++.
T Consensus 161 SG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~VYSTCsl~~eENE~V~dy~L~~r~~v~e~~~ 240 (284)
T TIGR00446 161 SGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLVYSTCSLEVEENEEVVDYLLRKRPDVVEEVN 240 (284)
T ss_pred CCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf 98833765723311477245776467679999999875044566688889850327712274899998617997077523
Q ss_pred -CCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf -13763233556643-455868808988763235577788863146676541
Q gi|254780666|r 391 -VPLNSAYWKSIDMA-MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 (445)
Q Consensus 391 -~~~~~~~~~~~~~~-~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k 440 (445)
.............. +...-+|++|++|| .+.+||||+|+|||
T Consensus 241 ~~~~G~E~~~~~~~k~y~~~v~~~lR~~P~--------~~~~~GFFVAklRK 284 (284)
T TIGR00446 241 LLVKGDEAFTANKGKEYSEEVKKALRVFPQ--------SYDCEGFFVAKLRK 284 (284)
T ss_pred CCHHCCCCCCCCCCCCCCHHHHHHCCCCCC--------CCCCCCEEEEEECC
T ss_conf 300001134665421002002100002878--------88977017754129
No 7
>KOG1122 consensus
Probab=100.00 E-value=0 Score=481.71 Aligned_cols=384 Identities=26% Similarity=0.340 Sum_probs=289.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-CCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHCCCC
Q ss_conf 898899999999999996089999999998-42-8810048899999999999999868-99733256225877522587
Q gi|254780666|r 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFV-LI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 (445)
Q Consensus 41 L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~-~~-~~~~~~~~~~~~iLr~a~~ell~~~-~p~~a~vneaVelak~~~~~ 117 (445)
++..|... .+-+++.+|++...+...... +. ...+...+.+...+. +..-.. +| +-+.|.+.... ..
T Consensus 35 ~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~l~lp~~~----~~~~~~~~P----~L~~v~~~~~~-~~ 104 (460)
T KOG1122 35 LDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEGDPLLLPTLE----EEEEKDSVP----DLQNVDLRIVE-LV 104 (460)
T ss_pred HHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCC----CCCHHHHHHHH-HH
T ss_conf 55664322-4667777877640451256788752234345422375322----222234687----63103577655-01
Q ss_pred CCCCCCCCCHHHHHHH--CCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECC---CHHHHHHH
Q ss_conf 5544444310221100--111100000123129978999988412679999999961469836676159---98999986
Q gi|254780666|r 118 RHFAKLVNSILRRVSR--EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHK 192 (445)
Q Consensus 118 ~~~~~~vNAVLR~~~r--~~~~~~~~l~~~~s~P~Wl~~~~~~~~G~~~~~~l~~~~~~p~~l~i~~k~---~~~~~~~~ 192 (445)
+....|.|-..+.-.| .-.....+.+..|.+-..+.+.+.+.+...++..+++++..+.|+.+|.++ -+......
T Consensus 105 ~~l~dfk~l~~~~~~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~ 184 (460)
T KOG1122 105 PVLGDFKNLKEPGRLRSEYCGQLKKDGAHYYAYGVFLAEKLMELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVE 184 (460)
T ss_pred HHHCCHHCCCCCCCCHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 21033001465443056679998744150004088999875454569999999871057898168724551013447999
Q ss_pred HHHHHC--------CCCCCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE---CC
Q ss_conf 432102--------3566111045678555850110010134632123222356321331003556447000010---25
Q gi|254780666|r 193 LNAVML--------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 (445)
Q Consensus 193 L~~~~~--------~~~~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~ 261 (445)
|...++ ..-++++.+....+..++.|.+|++.+|+++|.+|+++|+|+||++||||||||||||+|+ |.
T Consensus 185 L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMk 264 (460)
T KOG1122 185 LSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMK 264 (460)
T ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCEEECCCCCCCEEEECCCCCCCEECCHHCCCCCHHHHHHHHHC
T ss_conf 97456676654400042089953731157753323551242267623524520799887112121079950778999872
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHH
Q ss_conf 6841000105967987765443204887417720774457743---4476689616742110011011033328866778
Q gi|254780666|r 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 (445)
Q Consensus 262 ~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~ 338 (445)
|+|.|+|+|.+..|++.++.|++|+|+.|..+++.|++++..+ ..||+|||||||||||++.|.+.++|.++.+++.
T Consensus 265 n~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~ 344 (460)
T KOG1122 265 NTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDIL 344 (460)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 77469961354377999998899748774489736763255333676423145348777775554551013301299998
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 89999999999999860898289997747883439998999999688741781376323355664345586880898876
Q gi|254780666|r 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 (445)
Q Consensus 339 ~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~ 418 (445)
++..+|++||.+|..+|++||+||||||||+++|||.||+++|+++| .+.++|..+....+.... .+ |..|.
T Consensus 345 ~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p-~~kL~p~~~~iG~~G~~~-----~~--~~~ps 416 (460)
T KOG1122 345 RYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP-EVKLVPTGLDIGGEGRFR-----GG--RFHPS 416 (460)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHCC-CEEECCCCCCCCCCCCCC-----CC--CCCCC
T ss_conf 72799999999987311577089998532260122899999997098-627525656678887646-----75--45753
Q ss_pred --CCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf --323557778886314667654127
Q gi|254780666|r 419 --MLEKIDGVSSGMDGFFAVALRRLI 442 (445)
Q Consensus 419 --~~~~~~~~~~g~DGFF~A~l~k~~ 442 (445)
..+.++|+.|++||||+|+|+|..
T Consensus 417 l~~~~r~yPh~hnmdgffvaKl~k~s 442 (460)
T KOG1122 417 LKLTRRFYPHVHNMDGFFVAKLKKAS 442 (460)
T ss_pred HHHEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 33403306755577517999988650
No 8
>KOG2198 consensus
Probab=100.00 E-value=3.1e-40 Score=318.24 Aligned_cols=180 Identities=37% Similarity=0.533 Sum_probs=155.1
Q ss_pred HHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECC------CCCCHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 011001013463212322235632133100355644700001025------68410001059679877654432048874
Q gi|254780666|r 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV------SGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 (445)
Q Consensus 217 ~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~------~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~ 290 (445)
+..-|.++-||.+||+|+.+|+.+||++||||||||||||++|++ +.|.|+|+|.+.+|+..+..-++|+...+
T Consensus 131 e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~ 210 (375)
T KOG2198 131 ETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN 210 (375)
T ss_pred HCCCCCCHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 21445211242442264020226799844420138984489999997237777736753457889999999985269843
Q ss_pred EEEEECCCCCCCC----------CCCCCEEEECCCCCCCCHHHCCCHHHHC-CCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 1772077445774----------3447668961674211001101103332-8866778899999999999998608982
Q gi|254780666|r 291 EDIIEMDAFDYCP----------KKLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGG 359 (445)
Q Consensus 291 ~~~~~~D~~~~~~----------~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~-~~~~~l~~l~~~Q~~iL~~a~~~lk~gG 359 (445)
..+.+.|+..+.. ..+||+|||||||||-||+|++|++.-. .+.+.=..|..+|..||.+++++||+||
T Consensus 211 ~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG 290 (375)
T KOG2198 211 LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG 290 (375)
T ss_pred EEEECCCCEECCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 33431211005641014676033441253687145689843022802766655541135973899999999998725787
Q ss_pred EEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 8999774788343999899999968874178137632
Q gi|254780666|r 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 (445)
Q Consensus 360 ~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~ 396 (445)
+|||||||++|.|||.||+..|+++.+.++++.....
T Consensus 291 ~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~~ 327 (375)
T KOG2198 291 RLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSGD 327 (375)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 7999425787200279999999983685432230365
No 9
>KOG2360 consensus
Probab=100.00 E-value=4.7e-37 Score=294.59 Aligned_cols=383 Identities=22% Similarity=0.283 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999995599889999998511232168988999999999999960899999999984288100488999999999
Q gi|254780666|r 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89 (445)
Q Consensus 10 ~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~~~~iLr~a 89 (445)
.|..+|..+.....++....-... .+.--.+.+++..++++...+|.+++..=-+..+...+.... .+-
T Consensus 3 ~~~~~l~~~~~~~~s~k~l~~~s~---------~q~~k~~l~~v~~~~k~r~~l~~i~~d~~~~~~~~~~~~~~~--~~l 71 (413)
T KOG2360 3 EAAEILRDVEKKEGSIKMLVYESS---------KQNPKRTLALVCETLKYRPVLDEILEDSELKDAKMLARLVHM--VVL 71 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC--EEE
T ss_conf 411666647764307999987651---------105399999999887644899999720243445664654353--200
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999868997332562258775225875544444310221100111100000123129978999988412679999999
Q gi|254780666|r 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 (445)
Q Consensus 90 ~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~~~~l~~~~s~P~Wl~~~~~~~~G~~~~~~l~ 169 (445)
.|.+++...-. .+......-++--++|...+- .+ -.+. .....+.+..+.+.
T Consensus 72 ~~~ll~~~~~~-------------~~~~~~~~el~~~~~~~~~e~-------------~~-~~v~-~~~k~~~~~~~~l~ 123 (413)
T KOG2360 72 VHDLLLSKIKR-------------SGLMIDKRELKVIRLRLILRL-------------KI-ETVM-LKKKRKVKSLRELK 123 (413)
T ss_pred HHHHHHCCCCC-------------CCCEECCCHHHHHHHHHHHHH-------------HH-HHHH-HHHHHHHHHHHHHH
T ss_conf 33443102465-------------322230431444448777566-------------79-9988-87631378888763
Q ss_pred HHHCCCCCEEEEECCC---HHHHHHHHHHHHCC------CC---------CCEECCCCCCHHHCHHHHHCCCEECCCCCC
Q ss_conf 9614698366761599---89999864321023------56---------611104567855585011001013463212
Q gi|254780666|r 170 DACISPLYIDLTVKFD---IETWAHKLNAVMLP------TG---------GIRLKELPESIVSLPGFAEGVWWVQDASAS 231 (445)
Q Consensus 170 ~~~~~p~~l~i~~k~~---~~~~~~~L~~~~~~------~~---------~~~~~~~~~~i~~~~~f~eG~~~VQD~aSq 231 (445)
...+.|.+-.+|+++. .++....|...... +. .+.....+..+..++.|+.|.+.+||.||+
T Consensus 124 ~t~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asc 203 (413)
T KOG2360 124 LTMKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASC 203 (413)
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHCCCCCCCCEEECCCCCCCCEEEECHHHC
T ss_conf 05777775357850344741544003314445556540786054063006453027875224411211586477022103
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC--
Q ss_conf 3222356321331003556447000010---25684100010596798776544320488741772077445774344--
Q gi|254780666|r 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 (445)
Q Consensus 232 l~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~-- 306 (445)
+|+++|+|.+|..|+|.|||||.||.|+ |.|.|+|+|.|.+..|.+.+++-+...|..+++....|+........
T Consensus 204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~ 283 (413)
T KOG2360 204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFR 283 (413)
T ss_pred CHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 53654389998823554146653211299886224872132341688999999998717874532014444777810026
Q ss_pred -CCEEEECCCCCCCCHHHCCCHHH--HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf -76689616742110011011033--328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 307 -FDAVLVDAPCSSTGTIRRHPDVL--WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 307 -fD~iLlDaPCSg~Gt~rr~Pd~~--w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
...||+|++|||+|+..|.-++. =...++.|+.|...|..++.+|+.+-.. -+++|||||++.||||+||+..|.+
T Consensus 284 ~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~-k~vvystcs~~reene~vv~d~l~~ 362 (413)
T KOG2360 284 DVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNL-KRLVYSTCSLHREENEQVVQEVLQQ 362 (413)
T ss_pred CEEEEEECCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH-HHEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 505998579878776522324226777535799998787799999988607753-2401102325454415999998751
Q ss_pred CCCCEEECC--CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 887417813--7632335566434558688089887632355777888631466765412
Q gi|254780666|r 384 SPIPVELVP--LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 (445)
Q Consensus 384 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~ 441 (445)
.|....+.+ ..+. |...+...+...++++|..|. ..+++|||+|.+.|.
T Consensus 363 ~p~~~~l~~kK~~p~-w~~rg~~~~~~~e~~lr~~p~--------~~~~~gffva~fer~ 413 (413)
T KOG2360 363 NPDAKRLAPKKVLPA-WPHRGLSTFSGAEHCLRASPK--------STLTIGFFVALFERV 413 (413)
T ss_pred CHHHHHHHHHHCCHH-HHHCCCCCCCCCCCCEECCCC--------CCCCCEEEEEEEECC
T ss_conf 817766333432334-553477545421133042557--------887532799985049
No 10
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.94 E-value=1.2e-26 Score=217.48 Aligned_cols=125 Identities=38% Similarity=0.448 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 46999999999999955998899999985112321689889999999999999608999999999842881004889999
Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84 (445)
Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~~~~ 84 (445)
||+|.+|+++|.+|+.++.+++.+++.... ..++++||+|+++||||++||+++||++|++++++|+++.++.+++
T Consensus 1 mnaR~~A~~iL~~V~~~~~~~~~~l~~~~~----~~l~~~Dra~~~~lv~g~lR~~~~ld~~l~~~l~~p~~~~~~~~~~ 76 (126)
T cd00620 1 MNARSTAAEVLRDVLQRGASLNAVLSALQK----KDKSDRDRGLATELVYGTLRWLALLDWIINPLLKKPDVGKDPDVRN 76 (126)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 989999999999999679989999999886----5799888999999999999819999999999857771107999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 99999999998689973325622587752258755444443102211001
Q gi|254780666|r 85 LLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445)
Q Consensus 85 iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445)
+|++|+|||+|+++|+||+|||+|+++|..+ .++.+||||||||++.|+
T Consensus 77 lLrlg~yql~~~~~p~~A~VneaV~lak~~~-~~~~~~lVNAVLR~~~Re 125 (126)
T cd00620 77 LLRLGLYQLLYLDVPPHAAVDETVEIAKIRK-DLGRAGLVNAVLRRFERE 125 (126)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCC
T ss_conf 9999999987079996106999999999868-997666138983087625
No 11
>pfam01029 NusB NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.
Probab=99.86 E-value=5.1e-21 Score=175.67 Aligned_cols=124 Identities=31% Similarity=0.385 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHH
Q ss_conf 46999999999999955998899999985112321689889999999999999608999999999842-88100488999
Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQ 83 (445)
Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~~~ 83 (445)
.++|.+|+++|+++..++.+++.+++..... .++++|++|++++++|++|++..||.+|+++++ ++++++++.++
T Consensus 1 ~~aR~~a~q~L~~~~~~~~~~~~~l~~~~~~----~~~~~d~~~~~~l~~gv~~~~~~id~~i~~~~~~~~~~~l~~~~~ 76 (126)
T pfam01029 1 RNARELALQALYAVEERGASLNELLDKLLEA----DLDERDRAFATELVYGVLRNLEELDALIAKLLENWPLERLDPVDR 76 (126)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHH
T ss_conf 9499999999999986098999999999871----898899999999999999989999999998855999666599999
Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999999999986-8997332562258775225875544444310221100
Q gi|254780666|r 84 QLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 (445)
Q Consensus 84 ~iLr~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r 133 (445)
++||+|+|||+|+ ++|++++|||+|++||++. ++..++|||||||++.|
T Consensus 77 ~iLr~a~~El~~~~~~p~~~~InE~v~lak~~~-~~~~~~fvNaVL~~i~r 126 (126)
T pfam01029 77 AILRLAAYELLYLDDIPPHVAINEAVELAKKFG-GEKSAGFVNGVLRKIAR 126 (126)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHC
T ss_conf 999999999985789982445899999999877-88643028999887549
No 12
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.85 E-value=1.6e-20 Score=171.91 Aligned_cols=125 Identities=27% Similarity=0.293 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHH
Q ss_conf 69999999999999559988999999851123216898899999999999996089999999998428-81004889999
Q gi|254780666|r 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQ 84 (445)
Q Consensus 6 ~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~-~~~~~~~~~~~ 84 (445)
+||.+|+++|+++..++.+++.++++..... .++++|++|+++||+|++||+..||++|+.++++ +..+.++..++
T Consensus 1 ~AR~~a~~~L~~~~~~~~~~~~~l~~~~~~~---~l~~~d~~~~~~lv~gv~~~~~~ld~~i~~~l~~~~~~~~~~i~~~ 77 (129)
T cd00447 1 SAREIAFQALYQVEIRNGISLEAVLSALEKL---QLAKKDRPFALELVYGVLRNLPELDDIISPLLKKWLLDRLDKVDRA 77 (129)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9899999999999820999999999999877---8977899999999999999699999999998278803110088899
Q ss_pred HHHHHHHHHHHC--CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 999999999986--89973325622587752258755444443102211001
Q gi|254780666|r 85 LLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445)
Q Consensus 85 iLr~a~~ell~~--~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445)
+|++|+||++|+ ++|++|+|||+|++||++. ++..+||||||||++.|+
T Consensus 78 iLrl~~~el~~~~~~ip~~~~InE~v~lak~~~-~~~~~~fvNavLr~i~r~ 128 (129)
T cd00447 78 ILRLLLYELYQLLYDVPPPVAINEAVELAKRFG-DDDSAKFVNGVLRRIAKE 128 (129)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCC
T ss_conf 999999999985058985167899999999867-886320079997798734
No 13
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.84 E-value=4.7e-20 Score=168.47 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHH
Q ss_conf 7846999999999999955998899999985112321689889999999999999608999999999842-881004889
Q gi|254780666|r 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYS 81 (445)
Q Consensus 3 ~~~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~ 81 (445)
++..+|.+|+++|+++..++.+++.+++...... .+++.|+.|+++||+|+++++..||.+|+.+++ ++++++++.
T Consensus 2 ~R~~aR~~A~q~Ly~~~~~~~~~~~il~~~~~~~---~~~~~d~~~~~~lv~gv~~~~~~iD~~I~~~l~~w~~~rl~~v 78 (132)
T PRK00202 2 ARRKAREAAVQALYQWELSGNDIAEIEAEFLEEQ---DGADADVAYFRELVSGVVENQEELDELISPHLKDWTLERLDPV 78 (132)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 5799999999999999851999999999999874---5655779999999999999699999999998559996424689
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 999999999999986-89973325622587752258755444443102211001
Q gi|254780666|r 82 LQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445)
Q Consensus 82 ~~~iLr~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445)
.++|||+|+|||+|. ++|++++|||+|++||++. ++...+||||||+++.|+
T Consensus 79 ~~~ILr~a~yEl~~~~~~p~~v~InE~v~lak~~~-~~~~~~fVNgVLd~i~r~ 131 (132)
T PRK00202 79 ERAILRLAAYELLFRDDVPYKVVINEAIELAKKFG-DEDSHKFVNGVLDKIAKE 131 (132)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH
T ss_conf 99999999999985757754779999999999977-897213369999998752
No 14
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.79 E-value=1.5e-18 Score=157.31 Aligned_cols=126 Identities=24% Similarity=0.251 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHH
Q ss_conf 469999999999999559988999999851123216898899999999999996089999999998428-8100488999
Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQ 83 (445)
Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~-~~~~~~~~~~ 83 (445)
..+|..|+++|++...++.+.+.+++..... ...+..|+.|++++++|+++++..||.+|+.+++. +++++++..+
T Consensus 2 ~~aRe~a~q~LYq~~~~~~~~~~i~~~~~~~---~~~~~~d~~f~~~l~~gv~~~~~~iD~~I~~~l~~w~~~rl~~i~~ 78 (130)
T cd00619 2 RRARELAVQALYAWELAPEILAEVVSLLELL---QYKSKKVLPFALKLVRGVLENIEEIDELIEKHLRNWSLDRLAIVER 78 (130)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHH
T ss_conf 1999999999999670799999999999875---1133468999999999999849999999998718999676679999
Q ss_pred HHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 99999999999868-9973325622587752258755444443102211001
Q gi|254780666|r 84 QLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445)
Q Consensus 84 ~iLr~a~~ell~~~-~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445)
+|||+|+|||+|.+ +|.+++|||+|++||++. ++...+||||||+++.|+
T Consensus 79 ~ILr~a~~El~~~~~~p~~v~InEavelak~f~-~~~~~~fiNgVLd~i~k~ 129 (130)
T cd00619 79 AILRLAVYELLFLPDVPHPVVINEAIELAKRFG-GDDSHKFVNGVLDKIAKD 129 (130)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH
T ss_conf 999999999986867634679999999999857-786204489999998751
No 15
>TIGR01951 nusB transcription antitermination factor NusB; InterPro: IPR011605 The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. The antitermination proteins of Escherichia coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle. The solution structure indicates that the protein folds into an alpha/alpha-helical topology consisting of six helices; the arginine-rich N-terminus appears to be disordered .; GO: 0003715 transcription termination factor activity, 0006353 transcription termination.
Probab=99.77 E-value=7.8e-18 Score=152.01 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--CCCCCC
Q ss_conf 469999999999999559988999999851123--21689889999999---99999960899999999984--288100
Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA--FRLLSQRDQILVRA---IVNVTLRFLPRIDAVLDFVL--ISSLPR 77 (445)
Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~--~~~L~~~Dr~~~~~---Lv~gvlR~~~~ld~il~~~~--~~~~~~ 77 (445)
..+|..|+++|+++.-++...+.+.+....... -..++.+|..++.. |+.||++|+..||..|++++ +|++.+
T Consensus 2 ~~aR~~a~q~Ly~~e~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~f~~l~~Gv~~~~~~iD~~I~~~La~~W~l~R 81 (140)
T TIGR01951 2 RKARELAFQALYQLELRGEDIDSLVEELALEEDDEAEDIDKKDKEYAEKFAELVRGVLENLEEIDELIEKHLAKDWTLER 81 (140)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 58889999999998527998889999999887316898464668989999999989999999889999888634797235
Q ss_pred CCHHHHHHHHHHHHHHHHC--CCCCCC--CCCCHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 4889999999999999986--899733--2562258775225875544444310221100
Q gi|254780666|r 78 KKYSLQQLLRVSVAQILYL--DVADYA--VVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 (445)
Q Consensus 78 ~~~~~~~iLr~a~~ell~~--~~p~~a--~vneaVelak~~~~~~~~~~~vNAVLR~~~r 133 (445)
++..-|+|||+|+|||+|. |+|..+ +||||||+||+|.. ....+||||||.++.+
T Consensus 82 L~~VdraILRl~~yEl~~~~~D~P~~VA~~InEAielAK~ys~-~~s~kFiNGvLd~i~~ 140 (140)
T TIGR01951 82 LSKVDRAILRLAAYELLYLKKDVPVKVAVVINEAIELAKKYSD-DKSSKFINGVLDAIAK 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHCC
T ss_conf 1287899999999999863689894054325789999998426-8764137877664329
No 16
>COG0781 NusB Transcription termination factor [Transcription]
Probab=99.68 E-value=6.4e-16 Score=137.84 Aligned_cols=135 Identities=21% Similarity=0.193 Sum_probs=107.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC
Q ss_conf 97784699999999999995599-8899999985112321689--889999999999999608999999999842-8810
Q gi|254780666|r 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLS--QRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLP 76 (445)
Q Consensus 1 M~~~~~aR~~A~~iL~~v~~~~~-~~~~~l~~~~~~~~~~~L~--~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~ 76 (445)
|.+...+|..|+++|+++.-++. .++.+++.......-..++ ..|..|+..|+.|+++++..||.+|.++++ +++.
T Consensus 7 ~~~R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~L~~w~~~ 86 (151)
T COG0781 7 KLTRRQARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISPHLKKWSLE 86 (151)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 12589999999999999986588325678999999986212101453499999999999997999999999988069888
Q ss_pred CCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 048899999999999999868-997332562258775225875544444310221100111
Q gi|254780666|r 77 RKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 (445)
Q Consensus 77 ~~~~~~~~iLr~a~~ell~~~-~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~ 136 (445)
++++..++|||+|+||++|.+ +|..++||||||+||.+... ...+||||||.++.....
T Consensus 87 rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e-~s~kFINgVLd~i~~~~~ 146 (151)
T COG0781 87 RLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGE-DSHKFVNGVLDKIAKKLR 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 823999999999999999647999751299999999996778-733779999999998742
No 17
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=99.46 E-value=1.5e-13 Score=120.19 Aligned_cols=89 Identities=28% Similarity=0.389 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999999608999999999842-881004889999999999999986899733256225877522587554444
Q gi|254780666|r 45 DQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 (445)
Q Consensus 45 Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~~~~iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~ 123 (445)
=|.++.+++-.+++|+..||..|+.++. +.+.+++...++|||+|+|||+|.++|..++||||||+||+|. +....+|
T Consensus 113 VR~~a~~~i~~v~~~~~eID~~i~~~~~~W~l~Rl~~iDr~ILRlAv~El~~~d~P~~VaInEAVELAk~ys-~~~s~~F 191 (206)
T PRK09634 113 VREYALERVGLVIRNRDEIDELLDEVMVGWQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYS-DEQGRRF 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCHHH
T ss_conf 999999999999975899999999872699877757889999999999980359995113999999999867-8861144
Q ss_pred CCCHHHHHHHC
Q ss_conf 43102211001
Q gi|254780666|r 124 VNSILRRVSRE 134 (445)
Q Consensus 124 vNAVLR~~~r~ 134 (445)
||||||++...
T Consensus 192 INGVL~r~~~~ 202 (206)
T PRK09634 192 INGVLRRLQDA 202 (206)
T ss_pred HHHHHHHHHHH
T ss_conf 99898889876
No 18
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.22 E-value=2.5e-11 Score=103.75 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 4632123222356321331003556447000010256--84100010596798776544320488741772077445774
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~ 303 (445)
=|.+|.+-...+...++.+|||+|||.|-=++.++.. ..+|+++|+++..++..++|+++.|+.++.+...|..+..+
T Consensus 16 lD~Gt~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~~ 95 (170)
T pfam05175 16 LDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAVE 95 (170)
T ss_pred CCHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 79899999970897789949997764829899999978986798515449999999999998099848999744666577
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHC
Q ss_conf 3447668961674211001101103332886677889999999999999860898289997747883439
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEn 373 (445)
.++||.|+..+|= + .-. ..-..+...++..|.+.|+|||.|.-.+=+.++-|.
T Consensus 96 ~~~fD~IvsNPP~------h---------~g~--~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~y~~ 148 (170)
T pfam05175 96 PGKFDLIISNPPF------H---------AGK--ATDYDVAQRFIAGAARHLKPGGELWIVANRHLGYPS 148 (170)
T ss_pred CCCEEEEEECCCC------C---------CCC--CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHH
T ss_conf 8866089989772------1---------142--032899999999999961649799999989999479
No 19
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.13 E-value=5.1e-11 Score=101.47 Aligned_cols=152 Identities=26% Similarity=0.359 Sum_probs=117.6
Q ss_pred HHHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCC--EE
Q ss_conf 5011001013463212322235632133100355644700001025684-10001059679877654432048874--17
Q gi|254780666|r 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA--ED 292 (445)
Q Consensus 216 ~~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~--~~ 292 (445)
.+-+.|.|.=|=.+=..+...+ .|++|||+||=-||=|.|-+..++ .++++|+|.+-++..++|++-.|+.. +.
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~---~GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~ 271 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHR 271 (393)
T ss_pred CCCCCEEEHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 7420045287679999986131---6876788646676999999866997148982657899999999986299710105
Q ss_pred EEECCCCCCCC-----CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 72077445774-----3447668961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 293 IIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 293 ~~~~D~~~~~~-----~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
+++.|+.++.. ..+||.|++|+| ++.|++... ....+--..|+..+..+|+|||.++-||||
T Consensus 272 ~i~~Dvf~~l~~~~~~g~~fDlIilDPP-----sF~r~k~~~--------~~~~rdy~~l~~~~~~lL~pgG~l~~~s~~ 338 (393)
T COG1092 272 FIVGDVFKWLRKAERRGEKFDLIILDPP-----SFARSKKQE--------FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEHHHHHHHHHHHHHCCCCCCEEEECCC-----CCCCCCCCC--------HHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 6722399999999855995568997881-----003582100--------538989999999999970799689999367
Q ss_pred CCHHHCH--HHHHHHHHH
Q ss_conf 8834399--989999996
Q gi|254780666|r 368 LDKQDSE--EVVQKVLRS 383 (445)
Q Consensus 368 i~~eEne--~vV~~fL~~ 383 (445)
-.-...+ +.|..-+..
T Consensus 339 ~~~~~~~f~~~i~~a~~~ 356 (393)
T COG1092 339 RHFSSDLFLEIIARAAAA 356 (393)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 766989999999999986
No 20
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=99.08 E-value=1.1e-09 Score=91.46 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=111.5
Q ss_pred CHHHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCC--CE
Q ss_conf 85011001013463212322235632133100355644700001025684-1000105967987765443204887--41
Q gi|254780666|r 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLY--AE 291 (445)
Q Consensus 215 ~~~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~--~~ 291 (445)
..+.+.|+|.=|=..=.++... .+|.+|||++|=.||=|.+-+..++ .|+++|.|..-++..++|++..|+. .+
T Consensus 100 ~~gqktG~flDqR~nR~~~~~~---~~g~rvLn~Fsytg~fsv~A~~~GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~ 176 (286)
T pfam10672 100 GRNQNFGLFLDMRLGRRWVQEN---AKGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLSKGRDNHRLNGHDLGRV 176 (286)
T ss_pred CCCCCCEEEHHHHHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 4586667834238889999987---2898325311478699999876798779999198899999999999769995436
Q ss_pred EEEECCCCCCC----CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 77207744577----43447668961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 292 DIIEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 292 ~~~~~D~~~~~----~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
+.+..|+.++. ..+.||.|+||+|-=.-| ...+. +=-.+|+..|.++|+|||.|+-++||
T Consensus 177 ~~~~~D~f~~l~~~~~~~~fD~VilDPPsf~k~-------------~~~~~---~~Y~~l~~~a~~ll~~gG~L~~~s~s 240 (286)
T pfam10672 177 SFLGHDIFKSWGKIKKLGPYDLVIIDPPSFQKG-------------SFALT---KDYKKILRRLPELLVEGGTVLACVNS 240 (286)
T ss_pred EEEEEHHHHHHHHHHCCCCCCEEEECCCCCCCC-------------HHHHH---HHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 999830999999986179998799879998887-------------24788---78999999999860899689998188
Q ss_pred CCHHHCHHHHHHHHHHCC
Q ss_conf 883439998999999688
Q gi|254780666|r 368 LDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 368 i~~eEne~vV~~fL~~~~ 385 (445)
-.-.+ +...+.+-+..+
T Consensus 241 ~~l~~-~~~~~~~~~~~~ 257 (286)
T pfam10672 241 PAVGP-DFLIEEMAEEAP 257 (286)
T ss_pred CCCCH-HHHHHHHHHHCC
T ss_conf 65899-999999998587
No 21
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.97 E-value=5.9e-09 Score=86.19 Aligned_cols=131 Identities=20% Similarity=0.235 Sum_probs=106.4
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCEEE
Q ss_conf 23563213310035564470000102--568410001059679877654432048874177207744577434-476689
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVL 311 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~-~fD~iL 311 (445)
..|.|.||+.++|.-||-|.=|.++| .+.++++|+|.++.+++.++.|++|+|++|+.++.+||.+..++. .||+|.
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiF 107 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIF 107 (187)
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCEEE
T ss_conf 86088999989995788668999999739885599992588899999999998499967999546457636999999999
Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEC
Q ss_conf 61674211001101103332886677889999999999999860898289997747883439998999999688741781
Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 (445)
Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~ 391 (445)
+- |+|. ..+||+.++..|+|||+||--.- ..||+...-..++++... +..
T Consensus 108 IG----Gg~~----------------------i~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~~~~~~~g~~-ei~ 157 (187)
T COG2242 108 IG----GGGN----------------------IEEILEAAWERLKPGGRLVANAI---TLETLAKALEALEQLGGR-EIV 157 (187)
T ss_pred EC----CCCC----------------------HHHHHHHHHHHCCCCCEEEEEEE---CHHHHHHHHHHHHHCCCC-EEE
T ss_conf 87----9877----------------------78999999997186876999860---088899999999972985-699
Q ss_pred CCCC
Q ss_conf 3763
Q gi|254780666|r 392 PLNS 395 (445)
Q Consensus 392 ~~~~ 395 (445)
-...
T Consensus 158 ~v~i 161 (187)
T COG2242 158 QVQI 161 (187)
T ss_pred EEEE
T ss_conf 9984
No 22
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=98.96 E-value=1.3e-09 Score=91.03 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=86.1
Q ss_pred CCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 321331003556447000010256--8410001059679877654432048874-1772077445774344766896167
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAP 315 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445)
..+|+.|+||+||=|+=|+.++.. ..+|+|+|+++.-++.+++|++..++.+ +.++++|++++.++.+||+|+++.|
T Consensus 98 ~~~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~~~~~~DrvimnlP 177 (199)
T pfam02475 98 VKEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVILEGVADRVIMNLP 177 (199)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCEEEECCC
T ss_conf 48998899816886577899864078648999828999999999999980999836999287878604674009994897
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 421100110110333288667788999999999999986089828999
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY 363 (445)
=++ .+-|..|.+.+|+||.+=|
T Consensus 178 ~~a--------------------------~~fL~~A~~~lk~gg~iHy 199 (199)
T pfam02475 178 KSA--------------------------HEFLDKALRAVKDGGVIHY 199 (199)
T ss_pred CCH--------------------------HHHHHHHHHHHCCCCEEEC
T ss_conf 316--------------------------9999999998558989839
No 23
>PRK08317 hypothetical protein; Provisional
Probab=98.93 E-value=2.3e-09 Score=89.25 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=96.0
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCE
Q ss_conf 2235632133100355644700001025---684100010596798776544320488741772077445774-344766
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~ 309 (445)
...|+++||++|||++||+|.=+..|+. .+|+|+++|+|+.-++..+++++..+ .++..++.|+..+.. ++.||.
T Consensus 12 l~~L~l~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~lp~~d~sfD~ 90 (241)
T PRK08317 12 FELLAVQPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLL-SNVEFVRGDADGLPFPDESFDA 90 (241)
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCCCE
T ss_conf 973699997999996641749999999974999789999698899999999986228-9649995546435898887045
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-----EEECCCCHHHCHHHHHHHHHH
Q ss_conf 89616742110011011033328866778899999999999998608982899-----977478834399989999996
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-----FSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-----YsTCSi~~eEne~vV~~fL~~ 383 (445)
|... .++.. ..=..+.|..+.+.|||||++| |.||.+.+. +....+.++..
T Consensus 91 v~~~------~~l~h----------------~~d~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~-~~~~~~~i~~~ 146 (241)
T PRK08317 91 VRSD------RVLQH----------------LEDPRRALAEMARVLRPGGRAVVLDTDWDTLVIHSG-DRALMRKILNF 146 (241)
T ss_pred EEHH------HHHHH----------------CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CHHHHHHHHHH
T ss_conf 6221------15762----------------258999999999981888389999667886742898-88999999999
No 24
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.89 E-value=9.4e-09 Score=84.66 Aligned_cols=125 Identities=19% Similarity=0.335 Sum_probs=97.7
Q ss_pred CCCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCCC
Q ss_conf 213310035564470000102--568410001059679877654432048874-17720774457743447668961674
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445)
.+..+|||+|+|.|-=...++ -.+..|+|+|+|+.-++..++|++|.|+.+ +.++++|.....+..+||.|+..+|-
T Consensus 132 ~~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~~l~~~~fDlIvSNPPY 211 (307)
T PRK11805 132 EQPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRRYDLIVSNPPY 211 (307)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEECCCC
T ss_conf 78872777427827999999987899889998589999999999999838877389980402212688750779967997
Q ss_pred CCCCHHHCC-CHHHHCCCHHH-H---HHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 211001101-10333288667-7---88999999999999986089828999774
Q gi|254780666|r 317 SSTGTIRRH-PDVLWTRDTDD-I---VKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 317 Sg~Gt~rr~-Pd~~w~~~~~~-l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
=.+..+..- ||+++ .|.. | ..=..+-+.|+..|..+|+|||.|+.=.=
T Consensus 212 I~~~~~~~L~~ev~~--EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG 264 (307)
T PRK11805 212 VDAEDMADLPAEYRH--EPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVG 264 (307)
T ss_pred CCHHHHHHCCHHHCC--CCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 885656339775315--87888768924889999999988974476968999979
No 25
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.87 E-value=2.8e-08 Score=81.11 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=103.6
Q ss_pred CCCCCCCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 356321331003556447000010--256841000105967987765443204887417720774457743447668961
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlD 313 (445)
-|.+.||+.|||.-||.|.=|... ...+++|+|+|.++.++..+++|++|.|+.|+.++.+++..-. .+.+|+|++-
T Consensus 25 kL~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~Ap~~l-~~~pD~vFIG 103 (186)
T PRK08287 25 KLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEAPITL-TGKADAIFMG 103 (186)
T ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHC-CCCCCEEEEE
T ss_conf 719999999999578877899999997899889999379899999999899729998799937781103-5789849997
Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC-CEEECC
Q ss_conf 6742110011011033328866778899999999999998608982899977478834399989999996887-417813
Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVP 392 (445)
Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~-~~~~~~ 392 (445)
- +| ..+ .+||+.++..++|||+||-+.-++ |+...+..+++++.. .+++.-
T Consensus 104 G----sg--------------g~l-------~~il~~~~~~L~~gGriVinavtl---et~~~a~~~~~~~~~~~~e~~q 155 (186)
T PRK08287 104 G----SG--------------GHL-------TAIIDWALGHLHPGGRLVLNFILQ---ENLHSALAHLEKIGACELDCVQ 155 (186)
T ss_pred C----CC--------------CCH-------HHHHHHHHHHCCCCCEEEEEEEEH---HHHHHHHHHHHHCCCCCEEEEE
T ss_conf 4----78--------------988-------999999997579998999982608---7799999999976997615999
Q ss_pred CCCC
Q ss_conf 7632
Q gi|254780666|r 393 LNSA 396 (445)
Q Consensus 393 ~~~~ 396 (445)
++..
T Consensus 156 v~vs 159 (186)
T PRK08287 156 LQVS 159 (186)
T ss_pred EEEE
T ss_conf 9901
No 26
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.87 E-value=1.8e-08 Score=82.50 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=107.9
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCC--CCCCC
Q ss_conf 2356321331003556447000010---25684100010596798776544320488-741772077445774--34476
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCP--KKLFD 308 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~--~~~fD 308 (445)
..|.+.+++.+||.-||-|.=|... +...++|+|+|.++.+++.+++|++|.|+ .|+.++.+|+.+... ...||
T Consensus 34 ~~L~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l~~l~p~pD 113 (198)
T PRK00377 34 SKLRLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVLPKLNPKSD 113 (198)
T ss_pred HHHCCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCC
T ss_conf 97099998999991770329999999966978759999678889999999999809998859995254887720899889
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCE
Q ss_conf 68961674211001101103332886677889999999999999860898289997747883439998999999688741
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~ 388 (445)
+|+++.- -..+ .+||+.+++.|+|||+||-..-++ ||......+|++.....
T Consensus 114 ~vFIGG~------------------~g~l-------~~il~~~~~~L~~gGriVinaVtl---et~~~~~~~l~~~~~~~ 165 (198)
T PRK00377 114 RYFIGGG------------------GEEL-------PEIIQAALEKIGKGGRIVADAILL---ESLNKALSALEELGYKY 165 (198)
T ss_pred EEEEECC------------------CCCH-------HHHHHHHHHHCCCCCEEEEEEECH---HHHHHHHHHHHHCCCCC
T ss_conf 8999788------------------7778-------999999998579998999983629---88999999999769981
Q ss_pred EECCCCCCCC
Q ss_conf 7813763233
Q gi|254780666|r 389 ELVPLNSAYW 398 (445)
Q Consensus 389 ~~~~~~~~~~ 398 (445)
+..-++....
T Consensus 166 ev~qv~vsr~ 175 (198)
T PRK00377 166 EVTEVIIAKG 175 (198)
T ss_pred EEEEEEEEEC
T ss_conf 4999994647
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.86 E-value=3e-09 Score=88.31 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=95.0
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 6321232223563213310035564470000102---5684100010596798776544320488741772077445774
Q gi|254780666|r 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 (445)
Q Consensus 227 D~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~ 303 (445)
+.+.--|..+...+||++|||+.+|+|--++..+ ...|+|+.+|+++.-+...++|.++.|+.|++...+|+..+..
T Consensus 59 ~~gCGnP~~~a~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl 138 (258)
T PRK11873 59 GLGCGNPTALAELKPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV 138 (258)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 87889854546579999899947887775999999869997799985999999999999997599755999955531368
Q ss_pred -CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf -344766896167421100110110333288667788999999999999986089828999774788
Q gi|254780666|r 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 304 -~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
++.||.|+- -.++.--|| -.+.|..+.+.|||||+++.|-=-..
T Consensus 139 ~D~SfDvViS------ncVlnl~pD----------------k~~vl~E~~RVLKPGGRl~ISDiv~~ 183 (258)
T PRK11873 139 ADGSVDVIIS------NCVINLSPD----------------KERVFREAFRVLKPGGRFAISDVVLT 183 (258)
T ss_pred CCCCEEEEEE------CCEEECCCC----------------HHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9883519988------246760798----------------79999999996288978999974127
No 28
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.85 E-value=8.3e-09 Score=85.08 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=95.1
Q ss_pred CCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 32133100355644700001025--68410001059679877654432048874-1772077445774344766896167
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAP 315 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445)
..+..+|||+|+|.|-=++.++. ...+|+|+|+|+.-++..++|++++|+.+ +.++++|.....+..+||.|+..+|
T Consensus 119 ~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~~~~~~fDlIVSNPP 198 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCEEEECCC
T ss_conf 36777155521680799999998789987999989999999999999860854336888351433145777787997799
Q ss_pred CCCCCHHHCC-CHHHHCCCHHH-H---HHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 4211001101-10333288667-7---88999999999999986089828999
Q gi|254780666|r 316 CSSTGTIRRH-PDVLWTRDTDD-I---VKSACFQRKLLLQGISFVKPGGIVVF 363 (445)
Q Consensus 316 CSg~Gt~rr~-Pd~~w~~~~~~-l---~~l~~~Q~~iL~~a~~~lk~gG~lvY 363 (445)
-=.+.-+..- ||+++ .|.. | ..=...-++|+.+|.++|+|||.|+.
T Consensus 199 YI~~~e~~~l~~ev~~--EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~l 249 (284)
T TIGR03533 199 YVDAEDMADLPAEYHH--EPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CCCHHHHHHCCHHHCC--CCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 7884655449764115--86998758955879999999988984256978999
No 29
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=98.82 E-value=3.3e-09 Score=88.03 Aligned_cols=125 Identities=25% Similarity=0.371 Sum_probs=93.6
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCC
Q ss_conf 2223563213310035564470000102---5684100010596798776544320488741772077445774-34476
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFD 308 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD 308 (445)
++..+++.+|++|||+|||.|-=|..++ ..+++|+++|+|+.=++..++++++.+..+++.+++|+.++.. ++.||
T Consensus 39 ~v~~~~~~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf~d~sfD 118 (233)
T pfam01209 39 TMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFEDDSFD 118 (233)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99861899999899825405889999999849997499996999999999999985699983699821666886665657
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 68961674211001101103332886677889999999999999860898289997747883439998999999
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445)
.|.+ +-| +|-=|| . .+.|.+..+.|||||+++= +-+..-+|. .++.+..
T Consensus 119 ~v~~-----~fg-lrn~~d---------------~-~~al~E~~RVLKPGG~l~i--lefs~P~~~-~~~~~~~ 167 (233)
T pfam01209 119 IVTI-----SFG-LRNFPD---------------Y-LKVLKEAFRVLKPGGRVVC--LEFSKPENP-LLSQAYE 167 (233)
T ss_pred HHHH-----HHH-HHCCCC---------------H-HHHHHHHHHHCCCCCEEEE--EECCCCCCH-HHHHHHH
T ss_conf 3142-----101-212588---------------8-9999999987278978999--978888777-9999999
No 30
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=98.81 E-value=5.1e-09 Score=86.61 Aligned_cols=109 Identities=26% Similarity=0.304 Sum_probs=86.7
Q ss_pred CCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEECCC
Q ss_conf 632133100355644700001025684100010596798776544320488741772077445774--344766896167
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlDaP 315 (445)
.|..|.+|||+.||.|.=|-.|+..+++|+++|.|+.-++..+.+++..|+ ++...+.|+.++.. .++||.|++
T Consensus 45 ~~l~G~~ILDVGCGgG~lse~LAr~Ga~VtGID~S~~~I~~Ar~ha~~~~l-~i~y~~~~~e~l~~~~~~~FDvV~~--- 120 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARLGATVTGIDASEENIEVARLHALESGL-KIDYRQITAEELAAEHPGQFDVVTC--- 120 (233)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCC-CCEEEECCHHHHHHHCCCCEEEEEE---
T ss_conf 466899899975589711289996799799987998999999998564434-5116751476654305786347744---
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 421100110110333288667788999999999999986089828999774788
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
+.++- .+.=..+.|..++++|||||+|++||=.=+
T Consensus 121 ---~EVlE----------------HV~d~~~~l~~~~rlLKPGG~l~lsTiNrt 155 (233)
T PRK05134 121 ---MEMLE----------------HVPDPASFIRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred ---EHHHH----------------HCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf ---21477----------------538999999999997389914999726789
No 31
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.80 E-value=9.6e-09 Score=84.59 Aligned_cols=101 Identities=29% Similarity=0.407 Sum_probs=84.4
Q ss_pred CEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEECCCCCCCC
Q ss_conf 1003556447000010256-84100010596798776544320488741772077445774--34476689616742110
Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320 (445)
Q Consensus 244 ~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlDaPCSg~G 320 (445)
+|||++||+|.=+..++.. ..+++++|+|+.-++..+++....+..++.+.+.|..++.. .++||.|+.+.++...
T Consensus 1 rVLDiGcG~G~~~~~l~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHCCCEEEEEEECCEECC-
T ss_conf 9999988879999999956898899998988899999998753278864671488678863205753199991750106-
Q ss_pred HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 011011033328866778899999999999998608982899977
Q gi|254780666|r 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 321 t~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
..-+.+.|.+..+.|||||+++.++
T Consensus 80 --------------------~~~~~~~l~~~~~~LkpgG~~~is~ 104 (107)
T cd02440 80 --------------------VEDLARFLEEARRLLKPGGVLVLTL 104 (107)
T ss_pred --------------------CCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf --------------------5189999999998748581999999
No 32
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.78 E-value=5.1e-08 Score=79.20 Aligned_cols=121 Identities=19% Similarity=0.267 Sum_probs=97.0
Q ss_pred CCCCCCCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CCCCEEE
Q ss_conf 356321331003556447000010--256841000105967987765443204887417720774457743--4476689
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVL 311 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--~~fD~iL 311 (445)
-|.+.||+.++|+-||.|.=|... ...+|+|+|+|+++.+++.+++|++|.|+.|+.++++++.+...+ ..+|+|+
T Consensus 35 kL~l~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~L~~l~p~pD~vF 114 (196)
T PRK07402 35 QLRLEPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRIC 114 (196)
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEE
T ss_conf 70899999999947887799999998789988999976888999999989972999879997263666840899999999
Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 61674211001101103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
+-- +| ++ .+||+.++..++|||+||-.+-++ ||-..+..+|++..
T Consensus 115 IGG----g~---------------~l-------~~il~~~~~~L~pgGriVinaitL---etl~~~~~~l~~~~ 159 (196)
T PRK07402 115 IEG----GR---------------PI-------KEILQAVWQYLKPGGRLVATASSL---EGLYAISEGLAQLQ 159 (196)
T ss_pred ECC----CC---------------CH-------HHHHHHHHHHCCCCCEEEEEEEEH---HHHHHHHHHHHHCC
T ss_conf 848----96---------------88-------999999998679998999985709---88999999999738
No 33
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.78 E-value=1.1e-08 Score=84.18 Aligned_cols=116 Identities=30% Similarity=0.321 Sum_probs=88.1
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCC-CCCCCE
Q ss_conf 235632133100355644700001025---684100010596798776544320488-741772077445774-344766
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCP-KKLFDA 309 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~-~~~fD~ 309 (445)
..+++.||++|||+|||.|-=+..++. ..++|+++|+|+.=++..++++...+. .+++.+++|+.++.. ++.||.
T Consensus 45 ~~l~~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sfD~ 124 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 86278999989884577638799999972997679999198899999999999738988850798235568887666765
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCH
Q ss_conf 89616742110011011033328866778899999999999998608982899977478834399
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne 374 (445)
|. ++-| +|.-|| . .+.|....+.|||||+++-.-=| .-+|.
T Consensus 125 v~-----~~f~-l~~~~d---------~-------~~~l~E~~RVLkPGG~l~ilefs--~p~~~ 165 (239)
T PRK00216 125 VT-----IAFG-LRNVPD---------I-------DKALREMYRVLKPGGRLVILEFS--KPTNP 165 (239)
T ss_pred CC-----CCCE-EEECCC---------H-------HHHHHHHHHHCCCCEEEEEEECC--CCCCH
T ss_conf 00-----2615-671486---------7-------99999999876648089999758--99976
No 34
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.70 E-value=1.7e-08 Score=82.79 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=87.2
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEE
Q ss_conf 235632133100355644700001025684100010596798776544320488741772077445774--344766896
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLV 312 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLl 312 (445)
.++++.++++|||++||-|+=|+.|+....+|+++|+++.-++.+++|+++.|+.|++....|+..... ...+|.|+|
T Consensus 227 ~~~~~~~~~~vlDlycG~G~~sl~lA~~~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~d~vvv 306 (375)
T PRK03522 227 DWVRELPPKSMWDLFCGVGGFGLHCATPDMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPELVLV 306 (375)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE
T ss_conf 98631589789996578538889876417889999845999999999999869987699973778887634568978998
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 167421100110110333288667788999999999999986089828999774788
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
|+|=||.+ ++ -++.+.+ ++| .+|||.-|...
T Consensus 307 DPPR~Gl~-----~~--------~~~~l~~------------~~p-~~IvYVSCnP~ 337 (375)
T PRK03522 307 NPPRRGIG-----KP--------LCDYLSQ------------MAP-RFILYSSCNAQ 337 (375)
T ss_pred CCCCCCCH-----HH--------HHHHHHH------------CCC-CEEEEEECCHH
T ss_conf 99977751-----99--------9999986------------599-96999907989
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.69 E-value=8.4e-08 Score=77.63 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=89.9
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECC
Q ss_conf 56321331003556447000010256-84100010596798776544320488741772077445774-34476689616
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDa 314 (445)
++..||++|||++||-||=+.+|++. +..|+++|+|+.-++...++.... ..+...+.|+..... ++.||.|.
T Consensus 48 l~L~~~~kVLDvGCG~GG~a~~LA~~yg~~V~GiDls~~~~~~A~er~~~~--~~v~f~~~d~~~~~f~d~sFDvV~--- 122 (263)
T PTZ00098 48 IELDANSKVLDIGSGLGGGCKYINEKYGAHTHGIDICEKIVNIAKERNQDK--AKIEFEAKDILKKDFPENNFDLIY--- 122 (263)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC--CCEEEEECCCCCCCCCCCCEEEEE---
T ss_conf 488999868886888788999999974987999858899999999855125--854899678536778867455898---
Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCHHHCHHHHHHHHHH
Q ss_conf 742110011011033328866778899999999999998608982899977--478834399989999996
Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN--CSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT--CSi~~eEne~vV~~fL~~ 383 (445)
.+ |.-......| ..+++....+.|||||+|+.++ |+=...=.++..+.+.++
T Consensus 123 --------S~--dailHip~~D-------K~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~~~yi~~r 176 (263)
T PTZ00098 123 --------SR--DAILHLSLAD-------KKKLFEKCYKWLKPNGILLITDYCADEIENWDDEFKAYIKKR 176 (263)
T ss_pred --------EE--HHHHCCCHHH-------HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC
T ss_conf --------75--0223088243-------999999999984688789997501357899739899999846
No 36
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.69 E-value=2.8e-08 Score=81.15 Aligned_cols=117 Identities=28% Similarity=0.335 Sum_probs=91.6
Q ss_pred CCCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEE
Q ss_conf 356321331003556447000010256--84100010596798776544320488741772077445774-344766896
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLl 312 (445)
.+.+.||++|||+|||.|-=+.++++. .|+|+++|+|+.-|+..++.+...|..+++.+++||.++.. ++.||.|.+
T Consensus 46 ~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 46 LLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCEEEE
T ss_conf 60789998799966873199999999658844999979999999999874324766327997056549888876588986
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHH
Q ss_conf 1674211001101103332886677889999999999999860898289997747883439998
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~v 376 (445)
.= | +|-=| |+ .+.|..+.+.|||||++ .++.+.+-++...
T Consensus 126 ~f---g---lrnv~---------d~-------~~aL~E~~RVlKpgG~~--~vle~~~p~~~~~ 165 (238)
T COG2226 126 SF---G---LRNVT---------DI-------DKALKEMYRVLKPGGRL--LVLEFSKPDNPVL 165 (238)
T ss_pred EE---H---HHCCC---------CH-------HHHHHHHHHHHCCCEEE--EEEECCCCCCCHH
T ss_conf 51---2---35278---------78-------99999998762687499--9987689986016
No 37
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=3.1e-08 Score=80.81 Aligned_cols=123 Identities=24% Similarity=0.272 Sum_probs=101.3
Q ss_pred HHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEE
Q ss_conf 1100101346321232223563213310035564470000102---568410001059679877654432048874-177
Q gi|254780666|r 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 (445)
Q Consensus 218 f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~ 293 (445)
|+-+-=.|--.-|.+++.-++..||++|+|+..|.|-=|+.|+ ...|+|+.+|+.+..++..++|++..|+.+ +.+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CCCCCCEECCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 76787333577799999870999887899815680599999999648884599999527899999999998424561378
Q ss_pred EECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEECC
Q ss_conf 20774457743447668961674211001101103332886677889999999999999860898289-997747
Q gi|254780666|r 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV-VFSNCS 367 (445)
Q Consensus 294 ~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~l-vYsTCS 367 (445)
...|.++....+.||+|.||-| -.| +.|+++.+.|||||.+ +|+.|.
T Consensus 151 ~~~Dv~~~~~~~~vDav~LDmp------------~PW---------------~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 151 KLGDVREGIDEEDVDAVFLDLP------------DPW---------------NVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred EECCCCCCCCCCCCCEEEECCC------------CHH---------------HHHHHHHHHHCCCCEEEEECCCH
T ss_conf 7054000246554677997589------------848---------------99999998717996799983978
No 38
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4.2e-08 Score=79.86 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=76.4
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCCEE
Q ss_conf 2356321331003556447000010256841000105967987765443204887417720774457743----447668
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----KLFDAV 310 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----~~fD~i 310 (445)
..++..++++|||+-||-|+=|+.|+.+..+|+++|+++.-++.+++|+++.|+.|+.....|+.++... ..||.|
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred HHHHCCCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEE
T ss_conf 99743699779993558870135531246579999648999999999999739887799958688886510025799989
Q ss_pred EECCCCCCCC
Q ss_conf 9616742110
Q gi|254780666|r 311 LVDAPCSSTG 320 (445)
Q Consensus 311 LlDaPCSg~G 320 (445)
+||+|=+|.+
T Consensus 367 vvDPPR~G~~ 376 (432)
T COG2265 367 VVDPPRAGAD 376 (432)
T ss_pred EECCCCCCCC
T ss_conf 9899999999
No 39
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.67 E-value=1e-07 Score=76.91 Aligned_cols=121 Identities=23% Similarity=0.272 Sum_probs=97.5
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCC-CCCEE
Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207-744577434-47668
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DAFDYCPKK-LFDAV 310 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D~~~~~~~~-~fD~i 310 (445)
-+.+..+++|+.|||--||-||=-....--++.++.+|++.+.++..+.|++..|+....+... |++++...+ .||.|
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred HHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEE
T ss_conf 87774164698764576783488883664275676032379998556641566276761688730221277887742358
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 96167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
..|+|- .|.- ......+.+|-.+.|+.+...||+||++|+.+=
T Consensus 269 atDPPY------Grst-------~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 269 ATDPPY------GRST-------KIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EECCCC------CCCC-------CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 846998------7100-------245552899999999999987304848999617
No 40
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=1.1e-07 Score=76.84 Aligned_cols=136 Identities=18% Similarity=0.236 Sum_probs=100.6
Q ss_pred CCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 33100355644700001025--6841000105967987765443204887417720774457743447668961674211
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445)
..+|||+|+|.|-=...|+. ...+++|+|+|+.-++..++|++++|+.++.++++|..+..+..+||.|+--+|-=.+
T Consensus 110 ~~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~~~~~~~~~fDlIVSNPPYI~~ 189 (277)
T PRK09328 110 PCRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDWFSALSGQQFAMIVSNPPYIDA 189 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCEEEECCCCCCC
T ss_conf 88189954556999999998677989999648999999999999980988699994475211378777889978998770
Q ss_pred CHHH-------CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 0011-------01103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 320 GTIR-------RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 320 Gt~r-------r~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
.-.. ..|...+--.... ...-+.|+..+..+|+|||.|+-= +-.. -.+.|.++++++.
T Consensus 190 ~~~~~~~~~v~~EP~~AL~gg~dG----l~~~~~ii~~a~~~L~~~G~l~~E---ig~~-Q~~~v~~l~~~~g 254 (277)
T PRK09328 190 QDPHLQQGDVRFEPLSALVAADNG----MADLAHIIEQARQYLVPGGWLLLE---HGWQ-QGEAVRQLFIRAG 254 (277)
T ss_pred CHHHHCCHHCCCCCHHHHHCCCCH----HHHHHHHHHHHHHHCCCCCEEEEE---ECHH-HHHHHHHHHHHCC
T ss_conf 003438242166838998179758----999999999999844669899999---6815-8999999999679
No 41
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.64 E-value=7.8e-08 Score=77.85 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=96.7
Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCC
Q ss_conf 01346321232223563213310035564470000102---56841000105967987765443204887-417720774
Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDA 298 (445)
Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~ 298 (445)
+|.-|.| .++..++..||.+|+++..|-|+=|..|+ ...|+|+.+|+++.|.+..++|+++.|+. ++.+.+.|.
T Consensus 86 iYpkD~s--~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv 163 (309)
T pfam08704 86 LYTPDIS--LIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDV 163 (309)
T ss_pred ECCCCHH--HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 5560099--99998098999999983678429999999974888659998447899999999998749875058898520
Q ss_pred CCCC----CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEE-EEECCCCHHH
Q ss_conf 4577----434476689616742110011011033328866778899999999999998608-982899-9774788343
Q gi|254780666|r 299 FDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCSLDKQD 372 (445)
Q Consensus 299 ~~~~----~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk-~gG~lv-YsTCSi~~eE 372 (445)
..-. ....+|+|+||-| ..| +.+.++.+.|| |||+|+ ||.|-
T Consensus 164 ~~~gf~~~~~~~~D~VfLDlp------------~PW---------------~ai~~~~~~Lk~~Gg~l~~f~P~i----- 211 (309)
T pfam08704 164 CKSGFDTEVSNKADAVFLDLP------------APW---------------EAIPHAAKALKVEGGRLCSFSPCI----- 211 (309)
T ss_pred HCCCCCCCCCCCCCEEEECCC------------CHH---------------HHHHHHHHHHCCCCCEEEEECCCH-----
T ss_conf 013666445664358997589------------979---------------988999986068996899991989-----
Q ss_pred CHHHHHHH---HHHCC
Q ss_conf 99989999---99688
Q gi|254780666|r 373 SEEVVQKV---LRSSP 385 (445)
Q Consensus 373 ne~vV~~f---L~~~~ 385 (445)
+||++. |+++.
T Consensus 212 --eQv~r~~~aL~~~g 225 (309)
T pfam08704 212 --EQVQRTCLALAALG 225 (309)
T ss_pred --HHHHHHHHHHHHCC
T ss_conf --99999999999779
No 42
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=98.62 E-value=1.8e-08 Score=82.53 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=93.0
Q ss_pred CCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC-----CCCCCEEEECCCC
Q ss_conf 310035564470000102568410001059679877654432048874-1772077445774-----3447668961674
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP-----KKLFDAVLVDAPC 316 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~-----~~~fD~iLlDaPC 316 (445)
..|||+|||-||-|.+++....+|+|+|+++.+++..+.|++-.|+.+ ++.+++|..++.. ..+||.|++|+|=
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~sPPW 81 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFLSPPW 81 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 79999377807999999975898999979899999999989983987317999775999978876358875589977999
Q ss_pred CCCCHHHCC-CHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 211001101-103332886677889999999999999860898289997747883439998999999
Q gi|254780666|r 317 SSTGTIRRH-PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 317 Sg~Gt~rr~-Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445)
-|-+-.+.. -|+.-..+|.++.++.+.=.+|=.+.+=+|. +.=|-+|+.....
T Consensus 82 GGp~Y~~~~~fdl~~~~~p~~~~~l~~~~~~it~ni~lfLP-------------rn~d~~ql~~~~~ 135 (165)
T pfam09445 82 GGPSYKRQNVYDLEKKLKPYGLYQLLKESTEISKNIILFLP-------------RNSDLNQLSSLTR 135 (165)
T ss_pred CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCEEEECC-------------CCCCHHHHHHHHH
T ss_conf 99885656766877726877999999999863625799848-------------9899899999877
No 43
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.61 E-value=1.5e-07 Score=75.81 Aligned_cols=139 Identities=27% Similarity=0.447 Sum_probs=103.5
Q ss_pred CCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 33100355644700001025--6841000105967987765443204887417720774457743447668961674211
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445)
+.+|||+|+|.|-=+..++. .+..++|+|+|..-++..++|+++.|+.++.++++|.....+.++||.|+.-+|-=.+
T Consensus 88 ~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYI~~ 167 (251)
T TIGR03534 88 PLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCEEEECCCCCCH
T ss_conf 98699955671699999999679978999989879999999999980998268651314321568986689978998874
Q ss_pred CHHHC-CCHHHHCCCHH-HH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 00110-11033328866-77---889999999999999860898289997747883439998999999688
Q gi|254780666|r 320 GTIRR-HPDVLWTRDTD-DI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 320 Gt~rr-~Pd~~w~~~~~-~l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
.-+.. .|+++.. .|. .| ..=...=+.|+..+.++|++||.++-= +.+ ...+.|..++++++
T Consensus 168 ~e~~~l~~eV~~~-EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~E---ig~-~q~~~v~~l~~~~g 233 (251)
T TIGR03534 168 ADIHLLDPEVRFH-EPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLE---IGY-DQGEAVRALFEAAG 233 (251)
T ss_pred HHHHHCCCHHCCC-CHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE---ECH-HHHHHHHHHHHHCC
T ss_conf 5666328601026-729997179846999999999999853679889999---683-78999999999689
No 44
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.60 E-value=8.9e-08 Score=77.42 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=91.1
Q ss_pred CCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 31003556447000010256--8410001059679877654432048874-17720774457743447668961674211
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445)
++|||+.||-|+-+..|+.. ..+|+++|+|+.-++..+++.+..|+.+ +.+.+.|+......+.||.|+. .
T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d~FD~V~s------~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFG------F 74 (224)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCEEEH------H
T ss_conf 9089983668888999999779988999979999999999999972998651478521103999998356768------5
Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-C--CCCHHHCHHH---------HHHHHHHCCC
Q ss_conf 0011011033328866778899999999999998608982899977-4--7883439998---------9999996887
Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN-C--SLDKQDSEEV---------VQKVLRSSPI 386 (445)
Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT-C--Si~~eEne~v---------V~~fL~~~~~ 386 (445)
.++-.=|| -.+.|.+..+.|||||++|.+. | +..|-+-+++ =.++|++|..
T Consensus 75 evl~Hi~D----------------~~~~l~ei~RvLKPGG~lviaD~~~n~~~~i~~~~~~~~~~t~~eW~~ll~~~~l 137 (224)
T smart00828 75 EVIHHIKD----------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNL 137 (224)
T ss_pred HHHHCCCC----------------HHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 35765399----------------9999999998717984999998533788877787630024789999999976785
No 45
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.59 E-value=1.7e-07 Score=75.30 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=103.4
Q ss_pred CCCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCCC
Q ss_conf 213310035564470000102--568410001059679877654432048874-17720774457743447668961674
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445)
.+..+|||+|.|.|-=...|+ -....++|+|+|+..++..++|+++.++.+ +.++++|-.+.....+||.|+--+|-
T Consensus 134 ~~~~~ILDLGTGSGcIaISLa~e~p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l~~~kFDlIVSNPPY 213 (503)
T PRK01544 134 DKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIGKQKFDFIVSNPPY 213 (503)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCEEEECCCC
T ss_conf 55772788466679999999986789989999898999999999999808820179996553101588872479838998
Q ss_pred CCCCHHH--------CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--------ECCCCHHHC--HHHHH
Q ss_conf 2110011--------01103332886677889999999999999860898289997--------747883439--99899
Q gi|254780666|r 317 SSTGTIR--------RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS--------NCSLDKQDS--EEVVQ 378 (445)
Q Consensus 317 Sg~Gt~r--------r~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs--------TCSi~~eEn--e~vV~ 378 (445)
=.+..+. ..|.+...-.+..+. .-+.|..+|.++|+|||.|+.= ++.|+-..+ ..-|-
T Consensus 214 I~~~e~~~L~~eV~~yEP~lAL~ggeDGL~----~Yr~Ia~~a~~~Lkp~G~l~lEIGy~Q~e~V~~IF~~~gy~~~~~~ 289 (503)
T PRK01544 214 ISHSEKSEMAIETINYEPSIALFAEEDGLQ----AYFIIAENAKQFLKPNGKIILEIGFKQAEAVTQIFLDHGYNIDSIY 289 (503)
T ss_pred CCHHHHHHCCHHHHCCCCHHHHCCCCCCHH----HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 875666652766531693788648876289----9999999889852889889999787868999999996594377776
Q ss_pred HHHHHCCCCEEECCCCCCC
Q ss_conf 9999688741781376323
Q gi|254780666|r 379 KVLRSSPIPVELVPLNSAY 397 (445)
Q Consensus 379 ~fL~~~~~~~~~~~~~~~~ 397 (445)
+=|+.|.-.++..|++..-
T Consensus 290 kdl~~~~rvi~~~~~~~~~ 308 (503)
T PRK01544 290 KDLQSHNRVIEISPINLNR 308 (503)
T ss_pred HHHCCCCEEEEECCCCCCH
T ss_conf 6650576289962421156
No 46
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.58 E-value=2.1e-07 Score=74.61 Aligned_cols=110 Identities=21% Similarity=0.179 Sum_probs=87.7
Q ss_pred CCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 35632133100355644700001025684100010596798776544320488741772077445774344766896167
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445)
.+...+..++||+.||.|.-+..|+.++..|+|+|+|+..+..+++.+..-|+.++.....|.......+.||.|+
T Consensus 25 ~~~~~~~g~~LDlgcG~Grna~~La~~G~~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~~~~~~yDlIl---- 100 (198)
T PRK11207 25 AVKVVKPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNLTFDGEYDFIL---- 100 (198)
T ss_pred HHCCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEE----
T ss_conf 7335899747772478878699998689859999799999999999998759982465620312388777705897----
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 42110011011033328866778899999999999998608982899977
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
+|+++. -+.+..+ -.++.+..+.++|||+++...
T Consensus 101 --stvv~~-------fl~p~~~-------p~iia~mq~~t~PGG~~LIV~ 134 (198)
T PRK11207 101 --STVVLM-------FLEAKTI-------PGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_pred --EEEEEE-------ECCHHHH-------HHHHHHHHHHCCCCCEEEEEE
T ss_conf --864521-------0486678-------999999999608994899999
No 47
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.3e-07 Score=74.39 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=107.1
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 4632123222356321331003556447000010256--84100010596798776544320488741772077445774
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~ 303 (445)
=|.+|++...-|.+.++.+|||++||-|-=.+.++.. ..+|+-+|++..-++..++|++-.++.+..+...|....-.
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~ 222 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE 222 (300)
T ss_pred CCHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 68388999973775569968870788429999999868987289982669999998876997398763799812446654
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
++||.|+..+|= + ...++ .-.+=.+|+..|...|++||.|--..=+..+- ...|++
T Consensus 223 -~kfd~IisNPPf------h---------~G~~v--~~~~~~~ii~~A~~~L~~gGeL~iVan~~l~y------~~~L~~ 278 (300)
T COG2813 223 -GKFDLIISNPPF------H---------AGKAV--VHSLAQEIIAAAARHLKPGGELWIVANRHLPY------EKKLKE 278 (300)
T ss_pred -CCCCEEEECCCC------C---------CCCCH--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH------HHHHHH
T ss_conf -400689848884------6---------77101--67889999999997604597799997588896------899998
Q ss_pred C
Q ss_conf 8
Q gi|254780666|r 384 S 384 (445)
Q Consensus 384 ~ 384 (445)
+
T Consensus 279 ~ 279 (300)
T COG2813 279 L 279 (300)
T ss_pred H
T ss_conf 6
No 48
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.57 E-value=2.3e-07 Score=74.36 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=93.4
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEE--ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCC-CCCCCCEE
Q ss_conf 235632133100355644700001--02568410001059679877654432048874-177207744577-43447668
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC-PKKLFDAV 310 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~--l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~-~~~~fD~i 310 (445)
.+..+++|+.|||.|||-|+=... ++.....++++|+++.-++..+.|+++.|+.+ +.+.+.|++.+. +.+.||.|
T Consensus 22 ~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~~~~d~I 101 (171)
T pfam01170 22 NLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSVDTI 101 (171)
T ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEE
T ss_conf 98589999978868998789999999961358953675879999999999998289984699976665387987883189
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 9616742110011011033328866778899999999999998608982899977478834
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445)
+.|+| +.++ .. +-.++.++-.+++..+.+.++ |..+|.+.+-..-
T Consensus 102 v~nPP------YG~r------~~--~~~~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~~~ 146 (171)
T pfam01170 102 VTDPP------YGIR------IG--SKGALEKLYPAFLDEAKRVLR--GRLVFATPEKKDF 146 (171)
T ss_pred EECCC------CCCC------CC--CHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCHHH
T ss_conf 98898------2011------36--545699999999999998689--9789999686899
No 49
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.56 E-value=7.2e-08 Score=78.10 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------
Q ss_conf 23563213310035564470000102568410001059679877654432048874177207744577------------
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------ 302 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------------ 302 (445)
.++++..+ .|||++||-|+=|+.|+....+|+++|+++.-++.+++|+++.|++|+..+++|+.+..
T Consensus 202 ~~~~~~~~-~vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~~~~~l 280 (363)
T PRK05031 202 DATKGSKG-DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFRRL 280 (363)
T ss_pred HHHHCCCC-CEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHCC
T ss_conf 97613898-28986058664269988626879999538999999999999869986499965899999987343101001
Q ss_pred -----CCCCCCEEEECCCCCCCC
Q ss_conf -----434476689616742110
Q gi|254780666|r 303 -----PKKLFDAVLVDAPCSSTG 320 (445)
Q Consensus 303 -----~~~~fD~iLlDaPCSg~G 320 (445)
....||.|+||+|=+|.+
T Consensus 281 ~~~~~~~~~~d~vvvDPPR~Gl~ 303 (363)
T PRK05031 281 KGIDLKSYNFSTIFVDPPRAGLD 303 (363)
T ss_pred CCCCCCCCCCCEEEECCCCCCCC
T ss_conf 24664435586489899988874
No 50
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.56 E-value=5.7e-07 Score=71.44 Aligned_cols=140 Identities=20% Similarity=0.291 Sum_probs=107.2
Q ss_pred HHCCCEECCCCCCCCCCCCC---------CCCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 10010134632123222356---------321331003556447000010256841-00010596798776544320488
Q gi|254780666|r 219 AEGVWWVQDASASIPVQLFG---------TLNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHL 288 (445)
Q Consensus 219 ~eG~~~VQD~aSql~~~~l~---------~~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~ 288 (445)
..|..+=.|.+...-..-+. ..+|+.|+||-||=|-=|+.++..+.. |+|+|+++.-++-|++|++..++
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v 236 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV 236 (341)
T ss_pred CCCEEEEECHHHEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 18889997247848778744789999863069988998357865401246654786399994598999999999985576
Q ss_pred CC-EEEEECCCCCCCCC-CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-
Q ss_conf 74-17720774457743-4476689616742110011011033328866778899999999999998608982899977-
Q gi|254780666|r 289 YA-EDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN- 365 (445)
Q Consensus 289 ~~-~~~~~~D~~~~~~~-~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT- 365 (445)
.+ +..+++|++...+. ..||+|+.--|= .+.+-|..|...+++||.+.|=+
T Consensus 237 ~~~v~~i~gD~rev~~~~~~aDrIim~~p~--------------------------~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 237 EGRVEPILGDAREVAPELGVADRIIMGLPK--------------------------SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred CCEEEEEECCHHHHHHCCCCCCEEEECCCC--------------------------CCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 551567966488850204667889838987--------------------------202338999998514867999962
Q ss_pred CCCCHHH--CHHHHHHHHHHC
Q ss_conf 4788343--999899999968
Q gi|254780666|r 366 CSLDKQD--SEEVVQKVLRSS 384 (445)
Q Consensus 366 CSi~~eE--ne~vV~~fL~~~ 384 (445)
|.-...| .+..+..+-.+.
T Consensus 291 ~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 291 VPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred CCHHHCCCCHHHHHHHHHHHC
T ss_conf 243411112599999987643
No 51
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.55 E-value=2.1e-07 Score=74.67 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=109.0
Q ss_pred HHCHH-HHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 55850-11001013463212322235632133100355644700001025--6841000105967987765443204887
Q gi|254780666|r 213 VSLPG-FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 (445)
Q Consensus 213 ~~~~~-f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~ 289 (445)
..+|| |..|.+ |.+|++....|.+....+|||++||-|-=+..++. ...+|+++|++..-++..+.|+++.++.
T Consensus 170 ~slPGVFS~~~l---D~GS~lLL~~l~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~ 246 (342)
T PRK09489 170 KTLPGVFSRDGL---DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLE 246 (342)
T ss_pred ECCCCCCCCCCC---CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 336875789997---87999999737832488478606781799999998699976999968899999999989980988
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 41772077445774344766896167421100110110333288667788999999999999986089828999774788
Q gi|254780666|r 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 290 ~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
+ ++...|..... .++||.|+.-+|= .. . ..+.. .+=.+++..|.+.|+|||.|.-..=+.+
T Consensus 247 ~-~v~~sd~~~~v-~~~fD~IvsNPPF------H~--G---~~~~~------~i~~~fi~~A~~~L~~gG~L~iVANr~L 307 (342)
T PRK09489 247 G-EVFASNVFSEI-KGRFDMIISNPPF------HD--G---IQTSL------DAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred C-EEEECCCCCCC-CCCCCEEEECCCC------CC--C---CCCCH------HHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 6-89975644565-5678989968852------15--7---52658------9999999999986124988999981898
Q ss_pred HHH
Q ss_conf 343
Q gi|254780666|r 370 KQD 372 (445)
Q Consensus 370 ~eE 372 (445)
|-|
T Consensus 308 pY~ 310 (342)
T PRK09489 308 PYP 310 (342)
T ss_pred CCH
T ss_conf 968
No 52
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=98.55 E-value=2.2e-07 Score=74.51 Aligned_cols=85 Identities=26% Similarity=0.284 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-----CCCCCC
Q ss_conf 223563213310035564470000102568410001059679877654432048874177207744577-----434476
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFD 308 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-----~~~~fD 308 (445)
..++++.++++|||+-||-|.=|+.|+....+|+++|.++.-++..++|+++.|+.|+..++.|..+.. ....||
T Consensus 287 ~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D 366 (440)
T PRK13168 287 LEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFD 366 (440)
T ss_pred HHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCC
T ss_conf 99852678988998623856211113530676887605799999999999974999878997464566355786379999
Q ss_pred EEEECCCCCC
Q ss_conf 6896167421
Q gi|254780666|r 309 AVLVDAPCSS 318 (445)
Q Consensus 309 ~iLlDaPCSg 318 (445)
.|++|+|=+|
T Consensus 367 ~vi~DPPR~G 376 (440)
T PRK13168 367 KVLLDPPRAG 376 (440)
T ss_pred EEEECCCCCC
T ss_conf 8999988527
No 53
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.49 E-value=2e-07 Score=74.81 Aligned_cols=143 Identities=20% Similarity=0.273 Sum_probs=104.0
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC-C-CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCC--
Q ss_conf 123222356321331003556447000010256-8-410001059679877654432048874-17720774457743--
Q gi|254780666|r 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-G-AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPK-- 304 (445)
Q Consensus 230 Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~-~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~-- 304 (445)
|.+.+....+....+|||+|||-|.=++.++.+ . .+|+++|+.+.-.+..++|++-.++.. +.+++.|...+...
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCC
T ss_conf 99997652656687698836894689999745587780799981799999999988618613401676430887654236
Q ss_pred -CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH-----HHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHH
Q ss_conf -447668961674211001101103332886677889999-----99999999986089828999774788343999899
Q gi|254780666|r 305 -KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF-----QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 (445)
Q Consensus 305 -~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~-----Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~ 378 (445)
..||.|++-+|-=-.|.- ++ +......++- =.+++..|.++||+||++.+. ++.|.=.=|-
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~-~~--------~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V----~r~erl~ei~ 179 (248)
T COG4123 113 FASFDLIICNPPYFKQGSR-LN--------ENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV----HRPERLAEII 179 (248)
T ss_pred CCCCCEEEECCCCCCCCCC-CC--------CCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE----ECHHHHHHHH
T ss_conf 5654789959898787533-48--------674665566322288999999999974679789999----5588889999
Q ss_pred HHHHHCC
Q ss_conf 9999688
Q gi|254780666|r 379 KVLRSSP 385 (445)
Q Consensus 379 ~fL~~~~ 385 (445)
..|.++.
T Consensus 180 ~~l~~~~ 186 (248)
T COG4123 180 ELLKSYN 186 (248)
T ss_pred HHHHHCC
T ss_conf 9998669
No 54
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.48 E-value=1.5e-07 Score=75.73 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=80.8
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEECCCC
Q ss_conf 21331003556447000010256841-00010596798776544320488741772077445774--3447668961674
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPC 316 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlDaPC 316 (445)
..|.+|||+|||-|.=.+.-+.+++. ++.+|.+...++.+++|++.++..++.+++.|+..+.. ..+||.|++|+|-
T Consensus 51 i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~~~~~~fDlIF~DPPY 130 (198)
T PRK10909 51 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 130 (198)
T ss_pred CCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 29987998277746889999987997899997899999999999998488867999556999862559952189989997
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 2110011011033328866778899999999999998608982899977
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
. ...+ ..+...|.. ..+|+++|.+|+-+
T Consensus 131 ~----------------~~~~---~~~l~~l~~--~~~L~~~gliiiE~ 158 (198)
T PRK10909 131 R----------------KGLL---EETINLLEQ--NGWLADDALIYVES 158 (198)
T ss_pred C----------------CCHH---HHHHHHHHH--CCCCCCCCEEEEEE
T ss_conf 6----------------5559---999999998--88918996999995
No 55
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.46 E-value=4e-07 Score=72.55 Aligned_cols=102 Identities=26% Similarity=0.389 Sum_probs=83.4
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECC
Q ss_conf 56321331003556447000010256--8410001059679877654432048874177207744577434476689616
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDA 314 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDa 314 (445)
+.+.++++|||+.||+|.=|..|... +++|+++|.|+.-++..+++. .++...++|..++.+.+.||.|.--|
T Consensus 27 l~~~~~~~vlDlGCG~G~~t~~l~~r~p~a~v~GiD~S~~Ml~~Ar~~~-----~~~~f~~~D~~~~~~~~~~D~ifSNa 101 (252)
T PRK01683 27 VPLENVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMLAEARQAL-----PDCQFVEADIRNWQPEQALDLIYANA 101 (252)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC-----CCCEEEECCHHCCCCCCCCCEEEEEE
T ss_conf 8888999899937749899999999779987999989899999999758-----99838725042078767878895610
Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 742110011011033328866778899999999999998608982899977
Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
- .-|-.+ +..++.+.++.|+|||.|+-=.
T Consensus 102 a------------lhW~~d----------~~~~~~~~~~~L~PGG~la~Q~ 130 (252)
T PRK01683 102 S------------LQWLPD----------HYELFPHLVSLLAPQGVLAVQM 130 (252)
T ss_pred E------------HHHCCC----------HHHHHHHHHHHCCCCCEEEEEC
T ss_conf 0------------450787----------7999999998248787999988
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=98.46 E-value=2.3e-07 Score=74.33 Aligned_cols=103 Identities=23% Similarity=0.229 Sum_probs=84.4
Q ss_pred CCCCCCCC-CEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCC-CCCCEEEEECCCC------CCCC-
Q ss_conf 35632133-10035564470000102---56841000105967987765443204-8874177207744------5774-
Q gi|254780666|r 236 LFGTLNNL-SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDAF------DYCP- 303 (445)
Q Consensus 236 ~l~~~~g~-~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~-g~~~~~~~~~D~~------~~~~- 303 (445)
.|.++|++ ++||.-||-|+=|..++ .+.++|+|+|.++.++..+++|++|+ ++.|+.++.+|+. ....
T Consensus 14 ~L~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~~~~~~~~ 93 (135)
T TIGR02469 14 KLRLRPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELLNSDAPED 93 (135)
T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHH
T ss_conf 71789999468896057483899999735986079998537689879999999828999632563556843336777710
Q ss_pred ---CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf ---344766896167421100110110333288667788999999999999986089828999
Q gi|254780666|r 304 ---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 (445)
Q Consensus 304 ---~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY 363 (445)
...||+|++-= + .. ++ .+||+.++..|+|||+||=
T Consensus 94 ~~~~~~~Da~fvGG----s--------------~~------~~-~~il~~~~~~l~~GGr~v~ 131 (135)
T TIGR02469 94 SAKLPEPDAVFVGG----S--------------GG------KL-EEILEAVERRLRPGGRIVL 131 (135)
T ss_pred HCCCCCCCEEEECC----C--------------CH------HH-HHHHHHHHHCCCCCCEEEE
T ss_conf 05887468888838----9--------------71------78-9999999850596888888
No 57
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=98.44 E-value=1.9e-07 Score=74.90 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=70.2
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------
Q ss_conf 23563213310035564470000102568410001059679877654432048874177207744577------------
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------ 302 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------------ 302 (445)
..+++.+++ |||+.||-|+=|+.|+....+|+++|+++.-++..++|++..|+.|++.+..|+.++.
T Consensus 192 ~~~~~~~~~-vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~~~~~~~~~~~~~~~ 270 (353)
T pfam05958 192 EVTQGSKGD-LLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRL 270 (353)
T ss_pred HHHHCCCCC-EEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHHC
T ss_conf 986268995-8998468888889998647879999625999999999899869986499972899999987524223320
Q ss_pred -----CCCCCCEEEECCCCCCCC
Q ss_conf -----434476689616742110
Q gi|254780666|r 303 -----PKKLFDAVLVDAPCSSTG 320 (445)
Q Consensus 303 -----~~~~fD~iLlDaPCSg~G 320 (445)
....||.|+||+|=+|.+
T Consensus 271 ~~i~~~~~~~d~vvlDPPR~G~~ 293 (353)
T pfam05958 271 KGIDLKSYNCSTIFVDPPRAGLD 293 (353)
T ss_pred CCCCCCCCCCCCEEECCCCCCCH
T ss_conf 36663224677258489877773
No 58
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.43 E-value=2e-06 Score=67.36 Aligned_cols=120 Identities=25% Similarity=0.269 Sum_probs=83.0
Q ss_pred CCCCCEECCCCCCCCCEEE---ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---------CCCCC
Q ss_conf 2133100355644700001---02568410001059679877654432048874177207744577---------43447
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------PKKLF 307 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~---l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~---------~~~~f 307 (445)
.+|..|||+||||||=|-. .+...|.|+|+|+.+- . .+.++..+++|.++.. ...+|
T Consensus 50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~---------~--pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D--PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCC---------C--CCCCCEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 78998998068997578999997399973999865304---------5--378967640344588999999998589873
Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 66896167421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
|.||-|.-=--||..- -|-.....|=...|+-|..+|+|||.+| |=++.-+.++.+.+.++++
T Consensus 119 DvVlSDmAPn~tG~~~-----------~D~~~s~~L~~~al~~a~~~Lk~gG~fv---~K~F~G~~~~~~~~~~k~~ 181 (209)
T PRK11188 119 DVVMSDMAPNMSGTPA-----------VDIPRAMYLVELALDMCRQVLAPGGSFV---VKVFQGEGFDEYLREIRSL 181 (209)
T ss_pred CEEECCCCCCCCCCHH-----------HHHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEECCCCHHHHHHHHHCC
T ss_conf 0896666656678703-----------3599999999999999998626798899---9996487999999999702
No 59
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.42 E-value=4.2e-07 Score=72.39 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEE
Q ss_conf 23563213310035564470000102---5684100010596798776544320488741772077445774-3447668
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~i 310 (445)
++|+++||++||+..+|.|=-|+.|+ ..+|.|+++|+.+.=.+..+++++++|.+|+.++++|+..-.+ ...||+|
T Consensus 69 ElL~l~pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~pe~APYD~I 148 (317)
T PRK13943 69 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVI 148 (317)
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEE
T ss_conf 97178999868996577438999999984878759999867999999999999779986499979988888667997789
Q ss_pred EECCC
Q ss_conf 96167
Q gi|254780666|r 311 LVDAP 315 (445)
Q Consensus 311 LlDaP 315 (445)
++-|-
T Consensus 149 IVTAa 153 (317)
T PRK13943 149 FVTVG 153 (317)
T ss_pred EEEEC
T ss_conf 99852
No 60
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.41 E-value=4.6e-07 Score=72.16 Aligned_cols=105 Identities=23% Similarity=0.260 Sum_probs=85.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCE
Q ss_conf 223563213310035564470000102---5684100010596798776544320488741772077445774-344766
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~ 309 (445)
.++|+.+||++|||.-+|-|==|+.|+ ...|+|+++|+++.-.+..++|++++|+.|+.+++.|+..-.+ ...||+
T Consensus 69 l~~L~l~~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~~~apfD~ 148 (214)
T PRK13942 69 CELLDLDEGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYEENAPYDR 148 (214)
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 99727999997999679952999999997476785799971799999999999863768758985675667844598127
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 896167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
|++.+-+.. -|+. -...|++||+||.-..
T Consensus 149 Iiv~aa~~~------iP~~----------------------l~~qL~~gGrLV~Pvg 177 (214)
T PRK13942 149 IYVTAAGPD------IPKP----------------------LLEQLKDGGIMVIPVG 177 (214)
T ss_pred EEEEECCCC------CCHH----------------------HHHHCCCCCEEEEEEC
T ss_conf 999851765------7899----------------------9996288958999988
No 61
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.36 E-value=8.1e-07 Score=70.30 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=85.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEE
Q ss_conf 2235632133100355644700001025684100010596798776544320488741772077445774-344766896
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLl 312 (445)
.++|++++|++||+.-+|.|==|+.|+.-.++|+++|+++.=....++|++.+|+.|+.++..|+..-.+ ...||+|++
T Consensus 71 l~~L~l~~~~~VLeIGtGsGY~tAlLa~l~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~~~~pfD~Iii 150 (213)
T PRK00312 71 TELLELKPGDRVLEIGTGSGYQAAVLAHLVERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILV 150 (213)
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 99843689975999659860999999986292899942899999999999984998769996887667876697248999
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 16742110011011033328866778899999999999998608982899977
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
.+.|.. -|+ .-.+.|++||+||--.
T Consensus 151 ~~a~~~------~P~----------------------~l~~qL~~gGrLV~Pi 175 (213)
T PRK00312 151 TAAAPE------IPR----------------------ALLDQLAEGGILVAPI 175 (213)
T ss_pred EECCHH------HHH----------------------HHHHHCCCCCEEEEEE
T ss_conf 843412------259----------------------9998453297999998
No 62
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.5e-06 Score=68.28 Aligned_cols=133 Identities=25% Similarity=0.412 Sum_probs=92.8
Q ss_pred CEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCC-
Q ss_conf 10035564470000102568--410001059679877654432048874177207744577434476689616742110-
Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG- 320 (445)
Q Consensus 244 ~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~G- 320 (445)
+|||+|+|-|-=++.++... ..|+|+|+|+.-++..++|+++.|+.++..+..|..... .++||.|+.-+|-=-.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-RGKFDLIVSNPPYIPAED 191 (280)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHCC-CCCCCEEEECCCCCCCCC
T ss_conf 1899658831999999961898879999899999999999999828974798740033346-888577996899888852
Q ss_pred ------HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf ------01101103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 321 ------TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 321 ------t~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
+.+..|....--....+ ..=+.|+..+..++++||.++. -++... .+.|.+.+.++.
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl----~~~~~i~~~a~~~l~~~g~l~l-e~g~~q---~~~v~~~~~~~~ 254 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGL----EVYRRILGEAPDILKPGGVLIL-EIGLTQ---GEAVKALFEDTG 254 (280)
T ss_pred CCCCCCCCCCCHHHHHHCCCCHH----HHHHHHHHHHHHHCCCCCEEEE-EECCCC---HHHHHHHHHHCC
T ss_conf 11374213589799872487778----9999999989987286828999-976984---899999999749
No 63
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.33 E-value=2.3e-06 Score=66.98 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=97.9
Q ss_pred CCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 3100355644700001025--68410001059679877654432048874177207744577434476689616742110
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~G 320 (445)
..+||+|+|.|-=.+.|+. ....++|+|+|+.-++..++|+++.|+ ++.+.++|.... ...+||.|+.-+|.=.+.
T Consensus 111 ~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na~~~~~-~v~~~~~dl~~~-~~~~~DlIvSNPPYI~~~ 188 (285)
T PRK09329 111 QTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNAKSNGL-DVDFLLGDLFAP-FSRPADAFVCNPPYLSFK 188 (285)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHHHHCCC-CEEEEECCHHHH-HCCCCCEEEECCCCCCHH
T ss_conf 778884541799999999858986588033769999999999997299-479997630033-347678899899988844
Q ss_pred HHHC-CCHHHHCCCHH-HH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 0110-11033328866-77---889999999999999860898289997747883439998999999688
Q gi|254780666|r 321 TIRR-HPDVLWTRDTD-DI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 321 t~rr-~Pd~~w~~~~~-~l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
.+.. .|+++.. .|. -| ..=...=+.|+..+..+|+|||.++- =+...-.+ .|.++++++.
T Consensus 189 e~~~l~~eV~~~-EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~---Eig~~Q~~-~v~~l~~~~g 253 (285)
T PRK09329 189 EFFHVDPEVRCH-EPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWL---EIGSSQGE-SVKKIFAKHG 253 (285)
T ss_pred HHHHCCHHHHHC-CCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE---EECCHHHH-HHHHHHHHCC
T ss_conf 454498755436-70998847973899999999999996004988999---96854899-9999999669
No 64
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.30 E-value=2.3e-06 Score=67.01 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=105.3
Q ss_pred HHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC----C-----CCCCHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 100101346321232223563213310035564470000102----5-----6841000105967987765443204887
Q gi|254780666|r 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----V-----SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 (445)
Q Consensus 219 ~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~----~-----~~~~i~A~D~~~~Rl~~l~~~~~R~g~~ 289 (445)
.-|.|+--..=+.+.+.+++|.+|++|+|-|||-||=-.+.+ . .+-.++..|+++.-....+-||-=.|+.
T Consensus 24 ~~GeffTPr~Vv~lmv~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~ 103 (312)
T pfam02384 24 SGGEFYTPREVSKLIVELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIE 103 (312)
T ss_pred CCCEECCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 58635887899999999828999998821687733789999999998437855655636889989999999999984798
Q ss_pred --CEEEEECCCCCCC---CCCCCCEEEECCCCCCCCHHHCCC--HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf --4177207744577---434476689616742110011011--033328866778899999999999998608982899
Q gi|254780666|r 290 --AEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHP--DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 290 --~~~~~~~D~~~~~---~~~~fD~iLlDaPCSg~Gt~rr~P--d~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
+..+...|...-. ...+||.||..+|=++..--.+.. +-+|+. ..+..-..-+..-+.+++..|++||+.+
T Consensus 104 ~~~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~--~~~~~~~~~e~~Fiqh~l~~Lk~~Graa 181 (312)
T pfam02384 104 YNDFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRA--YGVPPKSNADFAFLQHIIYHLSPNGRAA 181 (312)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHC--CCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 87455214776557676654551189837864667665432102721103--6878887442999999998569997699
Q ss_pred EEE--CCCCHHHCHHHHHHHHHHC
Q ss_conf 977--4788343999899999968
Q gi|254780666|r 363 FSN--CSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 363 YsT--CSi~~eEne~vV~~fL~~~ 384 (445)
-.. -+++..-.|.-|++.|-++
T Consensus 182 iVlp~g~Lf~~~~e~~iR~~lle~ 205 (312)
T pfam02384 182 VVLPNGVLFRGGAEGDIRKALVEK 205 (312)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 995582310465088999999975
No 65
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.29 E-value=5.8e-07 Score=71.38 Aligned_cols=118 Identities=25% Similarity=0.273 Sum_probs=89.0
Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 01346321232223563213310035564470000102568410001059679877654432048874177207744577
Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 (445)
Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~ 302 (445)
-.||-..+.-....|.+.+..+|||++||+|-=|.+|++..+.++++|+|+.-+...+++. .+...+++|+..+.
T Consensus 24 A~~Q~~~a~~Ll~~l~~~~~~~vLDlGcGtG~~t~~l~~~~~~v~~~Dls~~Ml~~a~~~~-----~~~~~~~~D~e~Lp 98 (251)
T PRK10258 24 ADLQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKD-----AADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC-----CCHHHHHCHHHHCC
T ss_conf 6999999999997366578993999831002789999974996999959899999998748-----63343536063099
Q ss_pred C-CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 4-3447668961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 303 P-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 303 ~-~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
. ...||.|.- ++. +-|--++ ...|.+..+.|||||.++.||-.
T Consensus 99 ~~~~sfDli~S-----~~~-------lqW~~d~----------~~~l~e~~rvLkPgG~l~fst~g 142 (251)
T PRK10258 99 LATATFDLAWS-----NLA-------VQWCGNL----------STALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CCCCCCCEEEE-----CCC-------HHHCCCH----------HHHHHHHHHHCCCCCEEEEECCC
T ss_conf 98788217855-----040-------4525999----------99999999645899499998157
No 66
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.7e-06 Score=67.98 Aligned_cols=135 Identities=30% Similarity=0.403 Sum_probs=101.7
Q ss_pred ECCCCCCCCC--CCCCCCCCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 3463212322--23563213310035564470000102568-41000105967987765443204887417720774457
Q gi|254780666|r 225 VQDASASIPV--QLFGTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 (445)
Q Consensus 225 VQD~aSql~~--~~l~~~~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~ 301 (445)
.-+.++++.. .+.+...|..|+|+|||-|-=++..+..+ .+|+|+|+++.-++.+++|+++++ .++..++.|..++
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~ 105 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF 105 (198)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC-CCEEEEECCHHHC
T ss_conf 848999999999873884788888827884788999986297179999369899999998888608-8469998210114
Q ss_pred CCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 74344766896167421100110110333288667788999999999999986089828999774788343999899999
Q gi|254780666|r 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445)
Q Consensus 302 ~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445)
..+||.|+-++| -|+++||+|... |+.|...- ..|| ||+..-+++-++++-
T Consensus 106 --~~~~dtvimNPP---FG~~~rhaDr~F-----------------l~~Ale~s----~vVY---siH~a~~~~f~~~~~ 156 (198)
T COG2263 106 --RGKFDTVIMNPP---FGSQRRHADRPF-----------------LLKALEIS----DVVY---SIHKAGSRDFVEKFA 156 (198)
T ss_pred --CCCCCEEEECCC---CCCCCCCCCHHH-----------------HHHHHHHH----HEEE---EEECCCCHHHHHHHH
T ss_conf --776666997899---732213688899-----------------99999740----1478---740166079999998
Q ss_pred HHCCCCEE
Q ss_conf 96887417
Q gi|254780666|r 382 RSSPIPVE 389 (445)
Q Consensus 382 ~~~~~~~~ 389 (445)
+.+.+.+.
T Consensus 157 ~~~G~~v~ 164 (198)
T COG2263 157 ADLGGTVT 164 (198)
T ss_pred HHCCCEEE
T ss_conf 85497089
No 67
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.28 E-value=1.9e-06 Score=67.55 Aligned_cols=137 Identities=23% Similarity=0.348 Sum_probs=102.7
Q ss_pred CCEECCCCCCCCCCCCC---------C----------CCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHH
Q ss_conf 10134632123222356---------3----------21331003556447000010256841-0001059679877654
Q gi|254780666|r 222 VWWVQDASASIPVQLFG---------T----------LNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRC 281 (445)
Q Consensus 222 ~~~VQD~aSql~~~~l~---------~----------~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~ 281 (445)
.+.|+.-+..+-+.+-+ . ..|+++|-+-|=-|.=|.|-+..++. .+++|.|..=++=.++
T Consensus 514 ~~~v~E~~~~f~vNl~dYlDtGLFLDhR~~R~~i~~~a~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~ 593 (716)
T PRK11783 514 FLIVTEYGAKLWVNLTDYLDTGLFLDHRPTRRMIGQMAKGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAER 593 (716)
T ss_pred EEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 69999578689997772022674544379999999970788464312225610213352796122786270879999999
Q ss_pred HHHCCCCCC--EEEEECCCCCCCC--CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 432048874--1772077445774--344766896167421100110110333288667788999999999999986089
Q gi|254780666|r 282 NLDRLHLYA--EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 (445)
Q Consensus 282 ~~~R~g~~~--~~~~~~D~~~~~~--~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~ 357 (445)
|+...|+.. -..+++|..+|-. .+.||.|++|+|- +.. .+.-++.-..++=+..||..++++|+|
T Consensus 594 N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPPt-----FSn------Sk~m~~~~dvqrDh~~li~~~~~~L~~ 662 (716)
T PRK11783 594 NFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPPT-----FSN------SKRMEDSFDVQRDHVALIKLAMRLLRP 662 (716)
T ss_pred HHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCC-----CCC------CCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 998549996347389640899998577766789988999-----987------666788632203099999999986089
Q ss_pred CCEEEEEECCCC
Q ss_conf 828999774788
Q gi|254780666|r 358 GGIVVFSNCSLD 369 (445)
Q Consensus 358 gG~lvYsTCSi~ 369 (445)
||.|++||=.=-
T Consensus 663 ~G~l~FS~N~r~ 674 (716)
T PRK11783 663 GGTLYFSNNKRG 674 (716)
T ss_pred CCEEEEECCCCC
T ss_conf 968999628876
No 68
>KOG1540 consensus
Probab=98.23 E-value=5.5e-06 Score=64.16 Aligned_cols=129 Identities=26% Similarity=0.285 Sum_probs=99.2
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECC---C-----CCCHHHHHCCHHHHHHHHHHHHCCCCCC---EEEEECCCCCCCC
Q ss_conf 235632133100355644700001025---6-----8410001059679877654432048874---1772077445774
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV---S-----GAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCP 303 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~---~-----~~~i~A~D~~~~Rl~~l~~~~~R~g~~~---~~~~~~D~~~~~~ 303 (445)
..|+|.+|+++||+|.|-|-=++-+.. + .++|+-+|++++-|...+++.++.++.. +..+++||.++..
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296)
T KOG1540 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296)
T ss_pred HCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 21587778758983477525677798761134577776179993898999999877751597768716999477010899
Q ss_pred -CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf -3447668961674211001101103332886677889999999999999860898289997747883439998999999
Q gi|254780666|r 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 304 -~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445)
+..||..-+ .+-||- +...| +-|..|-+.|||||+.. |=-++++|-+.+++|..
T Consensus 174 dd~s~D~yTi------afGIRN---------------~th~~-k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~ 228 (296)
T KOG1540 174 DDDSFDAYTI------AFGIRN---------------VTHIQ-KALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYD 228 (296)
T ss_pred CCCCCEEEEE------ECCEEC---------------CCCHH-HHHHHHHHHCCCCCEEE---EEECCCCCCHHHHHHHH
T ss_conf 9775115888------421114---------------78778-99999987527786799---99735454077899997
Q ss_pred HCCCCE
Q ss_conf 688741
Q gi|254780666|r 383 SSPIPV 388 (445)
Q Consensus 383 ~~~~~~ 388 (445)
....++
T Consensus 229 ~ysf~V 234 (296)
T KOG1540 229 QYSFDV 234 (296)
T ss_pred HHHHHH
T ss_conf 122232
No 69
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=98.22 E-value=1.4e-06 Score=68.48 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=94.7
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC
Q ss_conf 4632123222356321331003556447000010256-8410001059679877654432048874-1772077445774
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP 303 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~ 303 (445)
|..--..++.-+..+||++|||+-||=||=+.+++++ +.+|+++.+|....+-.++++++.|+.+ +++...|.+++
T Consensus 47 Q~~Kl~~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~~g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~-- 124 (273)
T pfam02353 47 QQAKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF-- 124 (273)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC--
T ss_conf 999999999865889999899978880899999998479518999797899999999998708743212000626547--
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 344766896167421100110110333288667788999999999999986089828999774788
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
.++||+|. +.|++-.=++ +--...+....++|||||+++=-|.+..
T Consensus 125 ~~~fD~Iv------Siem~Ehvg~--------------~~~~~~f~~i~~~LkpgG~~~iq~i~~~ 170 (273)
T pfam02353 125 DEPFDRIV------SVGMFEHVGH--------------ENYDTFFKKLYNLLPPGGLMLLHTITGL 170 (273)
T ss_pred CCCCCEEE------EEHHHHHCCH--------------HHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 66666677------6516876287--------------7799999999986588973999999425
No 70
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=98.21 E-value=1.4e-06 Score=68.47 Aligned_cols=105 Identities=23% Similarity=0.258 Sum_probs=84.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-CCCCCCE
Q ss_conf 22356321331003556447000010---2568410001059679877654432048874177207744577-4344766
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDA 309 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-~~~~fD~ 309 (445)
.++|+++||++|||..+|-|==|+.| +...|+|+++|+++.-++..++|++++|+.|+.++..|+..-. ....||+
T Consensus 66 l~~L~l~~g~~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~~~apfD~ 145 (205)
T pfam01135 66 LELLELKPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWPEFAPYDA 145 (205)
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 99707899998999669965999999998387876999835899999999999984888658984564558833398058
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 896167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
|++.+.|.- -|+ .-...|++||+||--..
T Consensus 146 Iiv~aa~~~------iP~----------------------~l~~qL~~gGrLv~pvg 174 (205)
T pfam01135 146 IHVGAAAPE------IPE----------------------ALIDQLKEGGRLVIPVG 174 (205)
T ss_pred EEEEEECCC------CCH----------------------HHHHHCCCCCEEEEEEC
T ss_conf 999750676------889----------------------99996287978999987
No 71
>PRK11036 putative metallothionein SmtA; Provisional
Probab=98.19 E-value=3.5e-06 Score=65.61 Aligned_cols=129 Identities=21% Similarity=0.315 Sum_probs=94.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCC-
Q ss_conf 4632123222356321331003556447000010256841000105967987765443204887-41772077445774-
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP- 303 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~~~~~~- 303 (445)
||....+. . +. ...-+|||+.+|.|.=|..|+..+..|+.+|+|+.=+...+++++..|+. ++..++.+..++..
T Consensus 32 ~dl~~~l~-~-l~-~~plrVLDvG~G~G~~a~~lA~~Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~ 108 (256)
T PRK11036 32 QDLDRLLA-E-LG-PRPLRVLDAGGGEGQTAIKMAELGHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH 108 (256)
T ss_pred HHHHHHHH-H-CC-CCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
T ss_conf 99999998-4-69-999839983798779899999779979986699999999999988649661279885689988542
Q ss_pred -CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf -3447668961674211001101103332886677889999999999999860898289997747883439998999999
Q gi|254780666|r 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 304 -~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445)
...||.||+-+- .-|--+| ..+|...+++|||||.| |.+-.+ .|-.+....+.
T Consensus 109 ~~~~fDlVlcHaV------------LE~v~dP----------~~~l~~l~~~lkPGG~l--SLmfyN--~~alv~~n~l~ 162 (256)
T PRK11036 109 LETPVDLILFHAV------------LEWVADP----------KSVLQTLWSVLRPGGAL--SLMFYN--ANGLLMHNMVA 162 (256)
T ss_pred CCCCCCEEEEEHH------------HHHCCCH----------HHHHHHHHHHHCCCCEE--EEEECC--HHHHHHHHHHH
T ss_conf 3688667865136------------7723789----------99999999975899379--998428--51699999982
Q ss_pred H
Q ss_conf 6
Q gi|254780666|r 383 S 383 (445)
Q Consensus 383 ~ 383 (445)
.
T Consensus 163 G 163 (256)
T PRK11036 163 G 163 (256)
T ss_pred C
T ss_conf 5
No 72
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.16 E-value=1.5e-06 Score=68.28 Aligned_cols=107 Identities=25% Similarity=0.304 Sum_probs=81.7
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECCCCCC
Q ss_conf 21331003556447000010256841000105967987765443204887417720774457743-44766896167421
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSS 318 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-~~fD~iLlDaPCSg 318 (445)
.+|.+|||+.||-|-=|--|+..+..|+++|++++-++..+......|+. ++-......++... ++||.|++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~~~FDvV~c------ 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAGGQFDVVTC------ 130 (243)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCCCEEEE------
T ss_conf 77770887458832864999977994697438767789998754424632-25223329999724897448977------
Q ss_pred CCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 100110110333288667788999999999999986089828999774788
Q gi|254780666|r 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 319 ~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
. | +-+.+.--..++.++++++||||.++-||=.-+
T Consensus 131 m-------E---------VlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 131 M-------E---------VLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred H-------H---------HHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 3-------5---------877169999999999986299928999420138
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=98.16 E-value=8.1e-07 Score=70.30 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=89.8
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCC-----CEEEEECCCCCCCCC----CC
Q ss_conf 56321331003556447000010256841-000105967987765443204887-----417720774457743----44
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLY-----AEDIIEMDAFDYCPK----KL 306 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~-----~~~~~~~D~~~~~~~----~~ 306 (445)
+.-.+|.+|||+.||.|-=|--|+..++. |+++|.++.=++.++..++.-|+. .|+-.+.++.++..+ ..
T Consensus 80 ~~~~~G~~vLDVGCGGGlLsE~lAR~Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~ 159 (275)
T TIGR01983 80 LLKDSGLRVLDVGCGGGLLSEPLARLGANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKKS 159 (275)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 41178977998427857888999755884257752117799999988873340233111145444307887305578415
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 766896167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
||.|++ =.+-|.+.==.++|.+++.+|||||.|+-||=
T Consensus 160 FD~V~~----------------------mEvlEHV~dp~~f~~~c~~llkPgG~lF~STI 197 (275)
T TIGR01983 160 FDVVTC----------------------MEVLEHVPDPQAFIKACAQLLKPGGILFFSTI 197 (275)
T ss_pred CCEEEE----------------------EEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 733764----------------------32000027888999999985089984897300
No 74
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=98.16 E-value=6.1e-06 Score=63.81 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=86.7
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCC
Q ss_conf 56321331003556447000010256841000105967987765443204887417720774457743447668961674
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445)
+...++.++||+.||.|--|+-|+..+-.|+|+|+|+.-++.+++.+++-|+. +.+...|.......+.||.|+
T Consensus 26 ~~~i~pgk~LDlgcG~GRNslyLa~~G~~VtavD~n~~aL~~l~~ia~~e~l~-i~~~~~Din~~~~~e~YD~Ii----- 99 (192)
T pfam03848 26 VKTVKPGKALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKENLD-IPTALYDINSASIDENYDFIL----- 99 (192)
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCEEE-----
T ss_conf 86379974666047897318999868991799979999999999999970997-526873155568767768798-----
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 21100110110333288667788999999999999986089828999774
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
+|.++. -+.++.+. .|+.+--+.++|||+.++.+-
T Consensus 100 -sTVvfm-------FL~~~~ip-------~iI~~mq~~T~pGGynlIv~a 134 (192)
T pfam03848 100 -STVVLM-------FLQAERIP-------AIIANMQEHTNVGGYNLIVAA 134 (192)
T ss_pred -EEEEEE-------ECCHHHHH-------HHHHHHHHHCCCCCEEEEEEE
T ss_conf -888777-------31867877-------999999985289988999976
No 75
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3e-06 Score=66.13 Aligned_cols=105 Identities=23% Similarity=0.298 Sum_probs=87.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEE
Q ss_conf 2235632133100355644700001025684100010596798776544320488741772077445774-344766896
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLl 312 (445)
..+|+++||++||+..+|-|=-|+.|+.-.++|+++|+.+.=.+..++|++++|..||.++++|+..-.+ ...||+|+|
T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~V 144 (209)
T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIV 144 (209)
T ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 99748999986888777830999999997484999997199999999999976987349997885568877798478999
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
-|-+.-. |+ . -.+-||+||+||--.=
T Consensus 145 taaa~~v------P~--------~--------------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 145 TAAAPEV------PE--------A--------------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EECCCCC------CH--------H--------------HHHHCCCCCEEEEEEC
T ss_conf 5035779------98--------9--------------9985065988999985
No 76
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.04 E-value=1.3e-05 Score=61.43 Aligned_cols=122 Identities=26% Similarity=0.306 Sum_probs=86.1
Q ss_pred CCCCCCEECCCCCCCCCE---EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---------C--C
Q ss_conf 321331003556447000---0102568410001059679877654432048874177207744577---------4--3
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------P--K 304 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT---~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~---------~--~ 304 (445)
.++|+.|||+.|||||=| ..+....|.|+|+|+.+ ++-.-+.|+..+.+|.+... + +
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~---------~k~FP~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP---------MKGFPIENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC---------CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 10788678657898738778877606853389985455---------788564661475447678789999998578987
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 4476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
.++|.|+=||-=+=||+|.= |..+-..|=..-|+=|-..|+++|-.|== -+-=||=.+.++. |++
T Consensus 101 kk~DVV~SDaaP~~SG~~~i-----------Dh~Rs~dLv~~aL~ia~~vL~~~GnfvvK--vFqGe~~d~y~~e-~r~ 165 (192)
T TIGR00438 101 KKVDVVMSDAAPNISGIWDI-----------DHLRSIDLVELALDIAKEVLKPKGNFVVK--VFQGEEIDEYLNE-LRK 165 (192)
T ss_pred CEEEEEEECCCCCCCCCCCC-----------CHHHHHHHHHHHHHHHHHHHHCCCCEEEE--EEECCCHHHHHHH-HHH
T ss_conf 43778985268887898754-----------34437999999999999986158989999--8537428899997-652
No 77
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=98.03 E-value=2.7e-06 Score=66.44 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-----CCCCCEE
Q ss_conf 35632133100355644700001025684100010596798776544320488741772077445774-----3447668
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAV 310 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-----~~~fD~i 310 (445)
+|+.++.+.|+|+=||=|+=|+-||..--.++++|+-..-++..++|+++.|+.|++...+++-+.-+ ...||.|
T Consensus 289 ~l~Lqg~e~V~DayCG~GtftLpLA~qak~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~~p~~~~e~~~~D~~ 368 (434)
T TIGR00479 289 ALELQGEEKVVDAYCGVGTFTLPLAKQAKSVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETVLPKQPWEGISPDVV 368 (434)
T ss_pred HHHCCCCCEEEEEECCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 97159865578631575520044440121888871437678999888886035320133312321101442226778988
Q ss_pred EECCCCCC
Q ss_conf 96167421
Q gi|254780666|r 311 LVDAPCSS 318 (445)
Q Consensus 311 LlDaPCSg 318 (445)
|||||=+|
T Consensus 369 llDPPR~G 376 (434)
T TIGR00479 369 LLDPPRKG 376 (434)
T ss_pred EECCCCCC
T ss_conf 88888987
No 78
>KOG2904 consensus
Probab=98.03 E-value=2e-05 Score=60.05 Aligned_cols=143 Identities=22% Similarity=0.269 Sum_probs=101.1
Q ss_pred CCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEEC----CCCCCC--CCCCCCEEE
Q ss_conf 133100355644700001025--68410001059679877654432048874-177207----744577--434476689
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEM----DAFDYC--PKKLFDAVL 311 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~----D~~~~~--~~~~fD~iL 311 (445)
.+..|||+|+|-|-=++-++. .+++++|+|+|+..++...+|++|+++.+ +.+++. |..... ..++.|.++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEE
T ss_conf 66668870578318899998347873489985328899999988998741584689841222012565545457524885
Q ss_pred ECCCCCCCCHHHC-CCHHHHCCCHHHH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 6167421100110-1103332886677---889999999999999860898289997747883439998999999688
Q gi|254780666|r 312 VDAPCSSTGTIRR-HPDVLWTRDTDDI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 312 lDaPCSg~Gt~rr-~Pd~~w~~~~~~l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
..+|-=-+--++- +||++-.-.+-.| .+-...-..+..-|.++|.|||.+...+--. .+.-..|+..+..-+
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~~~lv~~~m~s~~ 303 (328)
T KOG2904 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEHSYLVRIWMISLK 303 (328)
T ss_pred CCCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCHHHHHHHHHCH
T ss_conf 3899655551223271330237445430666326999999876675456688588973355--668199999987132
No 79
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.03 E-value=4.2e-06 Score=65.04 Aligned_cols=108 Identities=26% Similarity=0.431 Sum_probs=78.5
Q ss_pred CCCC--CCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCC----CCCCCC
Q ss_conf 3563--2133100355644700001025684-1000105967987765443204887-417720774457----743447
Q gi|254780666|r 236 LFGT--LNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDY----CPKKLF 307 (445)
Q Consensus 236 ~l~~--~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~~~~----~~~~~f 307 (445)
++.+ ..|.++||++||-|+=.+.-+++++ .++.+|.+.+-.+.+++|++.+|+. +..++..|+..+ ...+.|
T Consensus 36 il~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~F 115 (187)
T COG0742 36 ILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPF 115 (187)
T ss_pred HCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCC
T ss_conf 73434457988999468764768999857885699996598999999999998487612599840089998722778851
Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHH-HHHHHCCCCCEEEE
Q ss_conf 668961674211001101103332886677889999999999-99986089828999
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL-QGISFVKPGGIVVF 363 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~-~a~~~lk~gG~lvY 363 (445)
|.|.+|+|-- ..+...+..++. .--..|+|+|.++-
T Consensus 116 DlVflDPPy~--------------------~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 116 DLVFLDPPYA--------------------KGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred CEEEECCCCC--------------------CCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 2899689975--------------------360668999988876587788968999
No 80
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.00 E-value=3.9e-05 Score=57.79 Aligned_cols=119 Identities=25% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--------CCCCCE
Q ss_conf 21331003556447000010256--84100010596798776544320488741772077445774--------344766
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------KKLFDA 309 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--------~~~fD~ 309 (445)
.++..|||+||||||=|-.+.+. .+.|+|+|+.+- . ...++..+.+|.++... ..+||.
T Consensus 20 ~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~---------~--~~~~~~~i~gDi~~~~~~~~i~~~~~~~~Dl 88 (176)
T pfam01728 20 PGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM---------K--PIQGVTFLRGDITDPETLEKLLELLPGKVDL 88 (176)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC---------C--CCCCCEEECCCCCCHHHHHHHHHHCCCCCCE
T ss_conf 7999999968999769999998566873999973446---------5--6778456516766878999999973998468
Q ss_pred EEECC--CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 89616--7421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 310 VLVDA--PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 310 iLlDa--PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
|+.|. +|||- + ..++....+|. ...+.-|..+|++||.+|--+..-.. .+.+.+. .++.+
T Consensus 89 V~sD~a~~~~g~----~------~~d~~~s~~L~---~~~l~~a~~~L~~gG~fv~K~f~~~~-~~~~l~~-~l~~~ 150 (176)
T pfam01728 89 VLCDGAPNVSGL----E------NTDSFISLRLV---LAALLLALEVLRPGGNFVVKLFKGFE-FSVELLY-KLKKG 150 (176)
T ss_pred EEECCCCCCCCC----C------CHHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEEEECCC-CHHHHHH-HHHHC
T ss_conf 973366565677----3------34789999999---99999999982437639999982787-6499999-99831
No 81
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=1e-05 Score=62.17 Aligned_cols=130 Identities=16% Similarity=0.264 Sum_probs=97.3
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCCCCCCCE
Q ss_conf 3222356321331003556447000010256-841000105967987765443204887-41772077445774344766
Q gi|254780666|r 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDA 309 (445)
Q Consensus 232 l~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~~~~~~~~~fD~ 309 (445)
++..-|..+||++|||..||-||=+...++. +.+|+++++|+...+..++++...|+. +++++-.|-+++... ||+
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~--fDr 140 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP--FDR 140 (283)
T ss_pred HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC--CCE
T ss_conf 999756999999898747884499999999849979996689999999999999759976607996562103243--420
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 896167421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
|. +.|++-. ...+.. ..-+.++.+.|+|||+++--|=+....+-. -...|+.++
T Consensus 141 Iv------SvgmfEh-------vg~~~~-------~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~~y 194 (283)
T COG2230 141 IV------SVGMFEH-------VGKENY-------DDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFIDKY 194 (283)
T ss_pred EE------EHHHHHH-------HCCCCH-------HHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCHHHHHHH
T ss_conf 55------6006887-------371028-------999999996459996599999667885544-332789985
No 82
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=2.2e-05 Score=59.74 Aligned_cols=120 Identities=26% Similarity=0.305 Sum_probs=84.2
Q ss_pred CCCCCEECCCCCCCCCEE---EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---------CCCC
Q ss_conf 213310035564470000---1025684100010596798776544320488741772077445774---------3447
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---------KKLF 307 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~---~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---------~~~f 307 (445)
.+|+.|+|+||||||=|= ..+..++.|+|+|+.+-.. +.++..++.|.+.... ...+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC-----------CCCCEEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 5898799838799849999999738888489997754556-----------78946884132484379999987077876
Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 66896167421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
|.|+.|+-=--||++.. |-.+...+=...++-|...|++||..+ |..+.-|+++.+-+.+.++
T Consensus 113 DvV~sD~ap~~~g~~~~-----------Dh~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 113 DVVLSDMAPNTSGNRSV-----------DHARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred CEEEECCCCCCCCCCCC-----------CHHHHHHHHHHHHHHHHHEECCCCEEE---EEEEECCCHHHHHHHHHHH
T ss_conf 66872588776787220-----------088999999999999987257898399---9997579879999999986
No 83
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=3.6e-05 Score=58.12 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=95.3
Q ss_pred CCCCCCCCCCC--CCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC
Q ss_conf 32123222356--32133100355644700001025684-10001059679877654432048874-1772077445774
Q gi|254780666|r 228 ASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP 303 (445)
Q Consensus 228 ~aSql~~~~l~--~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~ 303 (445)
+..+++..+|+ .++|++|||+.||-|-=+...+..++ +++++|+++.-++..++|+.+.|+.. +.....+......
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~ 226 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE 226 (300)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCC
T ss_conf 01799999999860589879982678159999999819866899718889999999999976996022003456300013
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
..+||.|.. ++ |+..=.++.......+||||+++-|= |+.+. ++-|...+.+
T Consensus 227 ~~~~DvIVA-----------------------NI--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~~ 278 (300)
T COG2264 227 NGPFDVIVA-----------------------NI--LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYEQ 278 (300)
T ss_pred CCCCCEEEE-----------------------HH--HHHHHHHHHHHHHHHCCCCCEEEEEE--ECHHH-HHHHHHHHHH
T ss_conf 686568986-----------------------05--27899999999998708893699986--20758-9999999985
Q ss_pred CC
Q ss_conf 88
Q gi|254780666|r 384 SP 385 (445)
Q Consensus 384 ~~ 385 (445)
+.
T Consensus 279 ~g 280 (300)
T COG2264 279 AG 280 (300)
T ss_pred CC
T ss_conf 89
No 84
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.97 E-value=1.1e-05 Score=62.01 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=95.5
Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 01346321232223563213310035564470000102568410001059679877654432048874177207744577
Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 (445)
Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~ 302 (445)
||=|..-.++....|.-..-.++|...||-|-=|.+|+..-..++|+|+++.-++..+++++ +.++|.+.+.|..+..
T Consensus 25 wYE~~r~~~~l~aaLp~~ry~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla--~~~hV~v~~~~vp~~w 102 (201)
T pfam05401 25 PFEQERHTQMLRLSLAQGTIANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMK--KWSHISWIVSDVQQFS 102 (201)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCCEEEECCCCCCC
T ss_conf 87899999999986783433002043566248789999987467321362999999999855--7998289825666659
Q ss_pred CCCCCCEEEECCCCCCCCHHHCCCHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 434476689616742110011011033328-86677889999999999999860898289997
Q gi|254780666|r 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 303 ~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~-~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
+.++||.|++ -|+-|-+ +..++ +.++.+...+|.|||.||+.
T Consensus 103 P~~~FDLIV~-------------SEVlYYL~d~a~l-------r~~~~~~v~~LaP~G~Lvfg 145 (201)
T pfam05401 103 TNELFDLIVV-------------AEVLYYLGDVAEM-------RGAVRNLVSMLAPDGQLVFG 145 (201)
T ss_pred CCCCEEEEEE-------------EHHHHHHCCHHHH-------HHHHHHHHHHHCCCCEEEEE
T ss_conf 9888627975-------------1477861879999-------99999999971899659973
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.90 E-value=1.2e-05 Score=61.57 Aligned_cols=105 Identities=22% Similarity=0.307 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC-CCCCC
Q ss_conf 22356321331003556447000010---2568410001059679877654432048874-1772077445774-34476
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP-KKLFD 308 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~-~~~fD 308 (445)
.++|++++|++|||.-+|.|==|+.| +...|+|+++|+++.=....++|++++|+.| +.+.++|+..-.+ ...||
T Consensus 65 l~~L~~~~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~~apfD 144 (205)
T PRK13944 65 CELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 99706899998999789851999999998374771799953699999999999985986330679765565774349804
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 6896167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
+|++.+-+.-. |+ . -..-|++||+||--.-
T Consensus 145 ~Iiv~aa~~~i------P~--------~--------------l~~QL~~gGrLV~Pvg 174 (205)
T PRK13944 145 AIIVTAAASTI------PS--------A--------------LVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEEEEEECCCC------CH--------H--------------HHHHCCCCCEEEEEEC
T ss_conf 89998507768------99--------9--------------9985487979999987
No 86
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=97.90 E-value=5e-06 Score=64.47 Aligned_cols=121 Identities=25% Similarity=0.260 Sum_probs=93.5
Q ss_pred CCCCCEECCCCCCCCCEEEECCC-----------CCCHHHHHCCHHHHHHHHHHHHCCC----CCCEEEEECCCCCCCC-
Q ss_conf 21331003556447000010256-----------8410001059679877654432048----8741772077445774-
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVS-----------GAKVTALDVSKRRLEKLRCNLDRLH----LYAEDIIEMDAFDYCP- 303 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~-----------~~~i~A~D~~~~Rl~~l~~~~~R~g----~~~~~~~~~D~~~~~~- 303 (445)
+++.+|||+|||-|==+..++.. .+.|+.+|+|+.=|+..++...-.+ -.+++.+++||..++.
T Consensus 42 k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF~ 121 (242)
T TIGR01934 42 KKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPFE 121 (242)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCC
T ss_conf 88897788723839999999863575553357763378987079889999987413420033321642110005508799
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
+..||.|=+ -+ .|.+....| +-|..+.+.|||||+| .-|=+++-.|-..++.|-.-
T Consensus 122 D~sFD~~Ti----------------aF-----GlRN~~d~~-~aL~E~~RVLKpgG~l--~iLEf~~P~~~~~~~~~Y~~ 177 (242)
T TIGR01934 122 DNSFDAVTI----------------AF-----GLRNVTDIQ-KALREMYRVLKPGGRL--VILEFSKPANGAFLKKFYKF 177 (242)
T ss_pred CCCEEEEEE----------------EC-----CCCCCCCHH-HHHHHHHHCCCCCCEE--EEECCCCCCCHHHHHHHHHH
T ss_conf 862444664----------------02-----554746867-8987731101889879--98407867641688999998
Q ss_pred C
Q ss_conf 8
Q gi|254780666|r 384 S 384 (445)
Q Consensus 384 ~ 384 (445)
+
T Consensus 178 Y 178 (242)
T TIGR01934 178 Y 178 (242)
T ss_pred H
T ss_conf 8
No 87
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=97.88 E-value=1.5e-05 Score=60.86 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=86.9
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCC-
Q ss_conf 321232223563213310035564470000102---568410001059679877654432048874-177207744577-
Q gi|254780666|r 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC- 302 (445)
Q Consensus 228 ~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~- 302 (445)
.-.++...++......+||+...+-|==|+.++ ..+|+|+++|+++.+.+..++++++.|+.+ ++++.+|+.+.-
T Consensus 31 ~~g~~L~~l~~~~~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~ 110 (204)
T pfam01596 31 EEGQFLSMLVKLVGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLE 110 (204)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHH
T ss_conf 99999999999759878999834325999999984899968999980489999999999977987447999874999999
Q ss_pred ------CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf ------4344766896167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 303 ------~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
..+.||.|++||- ..+. ...++.+.++|+|||.+|.=..
T Consensus 111 ~l~~~~~~~~fD~vFiDad------------------K~~Y-------~~y~e~~~~lL~~gGiii~DNv 155 (204)
T pfam01596 111 QLVEDKPLGEFDFAFVDAD------------------KSSY-------PNYYERLLELVKVGGLIAIDNT 155 (204)
T ss_pred HHHHCCCCCCCCEEEEECC------------------HHHH-------HHHHHHHHHHHCCCEEEEEECC
T ss_conf 9984477776438998188------------------8777-------9999999986369809999445
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.88 E-value=0.0001 Score=54.73 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCCCCCCCCCC--CCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCC
Q ss_conf 32123222356--32133100355644700001025684-100010596798776544320488741-772077445774
Q gi|254780666|r 228 ASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCP 303 (445)
Q Consensus 228 ~aSql~~~~l~--~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~-~~~~~D~~~~~~ 303 (445)
+..+++..+|. ..+|++|||+.||-|-=+..-+..++ +|+|+|+++.-++..++|+++.|+.+. .+...+.. ..
T Consensus 147 ~TT~lcl~~l~~~~~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~~~--~~ 224 (298)
T PRK00517 147 PTTRLCLEWLEKLVLPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRLELYLPEDQ--PL 224 (298)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CC
T ss_conf 4799999999843546886887157706999999974998499998989999999999998699842689616643--44
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
..+||.|+.- =++..-..+.....+.++|||+|+-| -|..++-+.|++.| ..
T Consensus 225 ~~~~DlvvAN-------------------------Ila~vl~~l~~~~~~~l~~~G~lilS--GIl~~~~~~v~~~~-~~ 276 (298)
T PRK00517 225 EGKADVIVAN-------------------------ILANPLIELAPDLAALVKPGGRLILS--GILAEQADEVLEAY-ED 276 (298)
T ss_pred CCCCCEEEEE-------------------------CCHHHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHH-HH
T ss_conf 6764689973-------------------------15899999999999973899799992--78488999999999-98
Q ss_pred CC
Q ss_conf 88
Q gi|254780666|r 384 SP 385 (445)
Q Consensus 384 ~~ 385 (445)
+.
T Consensus 277 ~g 278 (298)
T PRK00517 277 AG 278 (298)
T ss_pred CC
T ss_conf 79
No 89
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=97.86 E-value=1.9e-05 Score=60.23 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=85.0
Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCC----CCC-EE-EEECCCCCC---C-CCC-C
Q ss_conf 32133100355644700001025684-10001059679877654432048----874-17-720774457---7-434-4
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLH----LYA-ED-IIEMDAFDY---C-PKK-L 306 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g----~~~-~~-~~~~D~~~~---~-~~~-~ 306 (445)
...|.++||+|||-|+=.+.-+.+++ .++.+|.+.+-...+.+|++-++ ... .. +...+.+.. . ... .
T Consensus 53 ~i~~~~~LD~FAGsG~LG~EALSRgA~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~~~~~ts~ 132 (210)
T TIGR00095 53 EIVGAHFLDLFAGSGSLGLEALSRGAKSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFLAKKQTSP 132 (210)
T ss_pred HHCCCEEEEEECCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCC
T ss_conf 63687278854064465376640141623787368679999999999988871585300000002566657765179961
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 76689616742110011011033328866778899999999999998608982899
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
||.|++||| ++....|+..+..+=.+-|++-...++|+|.+|
T Consensus 133 ~d~iylDPP--------------f~~~~ad~~~~l~l~~~alerl~~~L~~~~~i~ 174 (210)
T TIGR00095 133 FDIIYLDPP--------------FNTGLADLEAILELLGEALERLNKWLNPKGLIV 174 (210)
T ss_pred EEEEEECCC--------------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 147871488--------------887610379999999999998731048785799
No 90
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=97.85 E-value=1e-05 Score=62.20 Aligned_cols=105 Identities=25% Similarity=0.305 Sum_probs=75.3
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCCCCEEEECC
Q ss_conf 2133100355644700001025684-1000105967987765443204887417720774457----7434476689616
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY----CPKKLFDAVLVDA 314 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~----~~~~~fD~iLlDa 314 (445)
..|..|||+|||-|.=.+.-+++++ .++.+|.+...++.+++|++.+++.+..++..+...+ ....+||.|.+||
T Consensus 42 i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~DP 121 (181)
T pfam03602 42 LGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVFLDP 121 (181)
T ss_pred CCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEECCC
T ss_conf 48987998278726989999976998899996999999999999998589977998108999987533578887663599
Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 742110011011033328866778899999999999998608982899977
Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
|=.. +.+ ..+-..|.. ..+++++|.+++=+
T Consensus 122 PY~~----------------~~~---~~~l~~l~~--~~~l~~~~iiiiE~ 151 (181)
T pfam03602 122 PYAK----------------GLI---EEALELLAE--KGWLNPNALIVVET 151 (181)
T ss_pred CCCC----------------HHH---HHHHHHHHH--CCCCCCCEEEEEEE
T ss_conf 7542----------------069---999999996--66657980999996
No 91
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.80 E-value=2.7e-05 Score=59.07 Aligned_cols=92 Identities=29% Similarity=0.323 Sum_probs=69.9
Q ss_pred ECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECCCCCCCCHHH
Q ss_conf 03556447000010256-84100010596798776544320488741772077445774-34476689616742110011
Q gi|254780666|r 246 LDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIR 323 (445)
Q Consensus 246 LD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~Gt~r 323 (445)
||++||.|.=+..+++. ..+++++|+|+.-++..+++.... ++...+.|..++.. ++.||.|+. .+++.
T Consensus 1 LDiGcG~G~~~~~l~~~~~~~v~giD~s~~~i~~a~~~~~~~---~~~~~~~d~~~~~~~~~~fD~I~~------~~~l~ 71 (95)
T pfam08241 1 LDVGCGTGLLTEALARLPGAQVTGVDLSPEMLALARKRAQED---GLTFVVGDAEDLPFPDESFDVVVS------SLVLH 71 (95)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCEEEE------CCCHH
T ss_conf 964624999999998457999999949789987766310266---947998033246755456859998------33066
Q ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 011033328866778899999999999998608982899
Q gi|254780666|r 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 324 r~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
.=+ + ..+++.++.+.|||||+++
T Consensus 72 ~~~---------~-------~~~~l~~~~r~LkpgG~l~ 94 (95)
T pfam08241 72 HLP---------D-------PERALREIARVLKPGGKLV 94 (95)
T ss_pred HCC---------C-------HHHHHHHHHHHCCCCEEEE
T ss_conf 468---------9-------9999999998778694997
No 92
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.75 E-value=3.2e-05 Score=58.47 Aligned_cols=118 Identities=20% Similarity=0.286 Sum_probs=89.1
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEE-CCCCCC
Q ss_conf 6321232223563213310035564470000102---568410001059679877654432048874-17720-774457
Q gi|254780666|r 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIE-MDAFDY 301 (445)
Q Consensus 227 D~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~-~D~~~~ 301 (445)
.+.-++...++.....++||....+-|==|+.++ ...|+|+++|+++.+.+..++|+++.|+.+ +..+. .|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
T ss_conf 14899999999734986499963523799999996388897699970798999999999997597652898835747999
Q ss_pred CC---CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 74---344766896167421100110110333288667788999999999999986089828999774788
Q gi|254780666|r 302 CP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 302 ~~---~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
.. .+.||.|++||- +. .+.+-++.+.++|+|||.+|--.-...
T Consensus 125 l~~~~~~~fDliFIDad------------------K~-------~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 125 LSRLLDGSFDLVFIDAD------------------KA-------DYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHCCCCCCCEEEEECC------------------HH-------HCHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 97334788568998378------------------43-------599999999997378968998303567
No 93
>pfam01269 Fibrillarin Fibrillarin.
Probab=97.75 E-value=0.00084 Score=47.96 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=86.6
Q ss_pred CCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCE
Q ss_conf 56321331003556447000010---25684100010596798776544320488741772077445774----344766
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDA 309 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~ 309 (445)
+..+||.+||=+.||-|+--.|+ ...+|.|+|+|.|++-++.|-.-+++- +|+..+-.||+.+.. -+..|.
T Consensus 69 ~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R--~NIvPIl~DAr~P~~Y~~lv~~VD~ 146 (229)
T pfam01269 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKR--PNIVPILEDARHPQKYRMLVEMVDV 146 (229)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHCCCCCE
T ss_conf 68589987999447779857678872288953999971735578999997427--9944576677875676542556668
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEE---C---CCCHHHCHHHHHHHHH
Q ss_conf 8961674211001101103332886677889999999999999-8608982899977---4---7883439998999999
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI-SFVKPGGIVVFSN---C---SLDKQDSEEVVQKVLR 382 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~-~~lk~gG~lvYsT---C---Si~~eEne~vV~~fL~ 382 (445)
|..|.. .| -|.+|+-..+ .+||+||.++-|. | +-.|++-=.....-|+
T Consensus 147 ifqDva---------Q~----------------~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~ 201 (229)
T pfam01269 147 IFADVA---------QP----------------DQARILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLK 201 (229)
T ss_pred EEECCC---------CH----------------HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 996278---------77----------------78999999999861269889999971342167898999999999998
Q ss_pred HC
Q ss_conf 68
Q gi|254780666|r 383 SS 384 (445)
Q Consensus 383 ~~ 384 (445)
+.
T Consensus 202 ~~ 203 (229)
T pfam01269 202 EE 203 (229)
T ss_pred HC
T ss_conf 76
No 94
>KOG2187 consensus
Probab=97.75 E-value=8.1e-05 Score=55.48 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---C---CC
Q ss_conf 22356321331003556447000010256841000105967987765443204887417720774457743---4---47
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---K---LF 307 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~---~f 307 (445)
.+++...+++.++|+|||-|.=.+.++..-+.|+.+++++.-+.-.+.|+++.|++|...+++-+.++.+. . .-
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187 376 GEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred HHHHCCCCCCEEEEEEECCCCEEHHHHCCCCCEEEEECCHHHCCHHHHCCHHCCCCCCEEEECCHHHCCCHHCCCCCCCC
T ss_conf 99708998847998630688400001026661210233845444355400115865402430642001501205678887
Q ss_pred C-EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 6-689616742110011011033328866778899999999999998608982899977478834399989
Q gi|254780666|r 308 D-AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 308 D-~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
+ .+++|+|=+|. ... +-++....+.--+++|.+|++.-+ --+++
T Consensus 456 ~~v~iiDPpR~Gl------------------h~~-------~ik~l~~~~~~~rlvyvSCn~~t~-ar~v~ 500 (534)
T KOG2187 456 TLVAIIDPPRKGL------------------HMK-------VIKALRAYKNPRRLVYVSCNPHTA-ARNVI 500 (534)
T ss_pred CEEEEECCCCCCC------------------CHH-------HHHHHHHCCCCCCEEEEECCHHHH-HHHHH
T ss_conf 5689978886761------------------099-------999998534755058997166775-30378
No 95
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.75 E-value=1.6e-05 Score=60.63 Aligned_cols=108 Identities=27% Similarity=0.289 Sum_probs=81.3
Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 321331003556447000010256841000105967987765443204887-4177207744577434476689616742
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~~~~~~~~~fD~iLlDaPCS 317 (445)
...|.+|||+.||.|.=+..|+..+++|+|+|+|+.=++..++++...|+. +++..+.|... ..+.||.|++
T Consensus 61 dl~G~rVLDaGCGtG~la~~LA~~Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDle~--~~G~FD~Vv~----- 133 (230)
T PRK07580 61 DLTGLSILDAGCGTGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLDGNITFEVGDLES--LLGSFDTVVC----- 133 (230)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCCCCCCHHH-----
T ss_conf 978998988187867879999977998999838999999999755862787675389667654--5798660233-----
Q ss_pred CCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
Q ss_conf 11001101103332886677889999999999999860898289997747883
Q gi|254780666|r 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 (445)
Q Consensus 318 g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~ 370 (445)
-|+......+|+. ++|.+.++..+ |.++.+.---+|
T Consensus 134 --------mdvLiHYp~~d~~-------~~l~~la~~~~--~~~ifTfAP~T~ 169 (230)
T PRK07580 134 --------LDVLIHYPQEDAE-------RMLAHLASLTR--GSLIFTFAPYTP 169 (230)
T ss_pred --------CCCEEECCHHHHH-------HHHHHHHHCCC--CEEEEEECCCCH
T ss_conf --------3715545788999-------99999972558--859999689869
No 96
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.74 E-value=3.6e-05 Score=58.08 Aligned_cols=106 Identities=24% Similarity=0.258 Sum_probs=75.7
Q ss_pred CCCCCCCEECCCCCCCCCEEEEC-CC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEEC
Q ss_conf 63213310035564470000102-56-84100010596798776544320488741772077445774--3447668961
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLI-VS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVD 313 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~-~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlD 313 (445)
..+.+.+|||+=||-|-.+.-.+ +. -.+|+++|+++..++.+++|++..|+.++++.+.|+..+-. ...||.|=||
T Consensus 48 ~~~~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~~~~~~fD~IDlD 127 (376)
T PRK04338 48 GPKRRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLHENERKFDVVDID 127 (376)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEC
T ss_conf 42069768740676549999998727998799956999999999999998299826981324899998378758778678
Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
Q ss_conf 674211001101103332886677889999999999999860898289997747883
Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 (445)
Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~ 370 (445)
+==|.+ .-|+.|...++.|| |+|.|||=..
T Consensus 128 PfGSp~--------------------------pflDsAi~~v~~~G-lL~vTaTD~a 157 (376)
T PRK04338 128 PFGSPA--------------------------PFLDSAIRALRRGG-LLCVTATDTA 157 (376)
T ss_pred CCCCCC--------------------------HHHHHHHHHHHCCC-EEEEEECCCC
T ss_conf 999920--------------------------87999999840398-8999946861
No 97
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.74 E-value=1.5e-05 Score=60.97 Aligned_cols=94 Identities=27% Similarity=0.402 Sum_probs=68.8
Q ss_pred ECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCCCCEEEECCCCCCCCH
Q ss_conf 03556447000010256--841000105967987765443204887417720774457--74344766896167421100
Q gi|254780666|r 246 LDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGT 321 (445)
Q Consensus 246 LD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~--~~~~~fD~iLlDaPCSg~Gt 321 (445)
||+.||.|.=+.++++. .++|+++|+|+.-++..++++.+.+..+......+.... .+.+.||.|+. .++
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~------~~v 74 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVA------SNV 74 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEE------CCC
T ss_conf 98863379999999987899889998598899999999998713453111000000022203589889961------041
Q ss_pred HHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 1101103332886677889999999999999860898289
Q gi|254780666|r 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 (445)
Q Consensus 322 ~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~l 361 (445)
+..=|| ..+.|.++.+.|||||+|
T Consensus 75 l~~~~~----------------~~~~l~~~~r~LkpgG~l 98 (98)
T pfam08242 75 LHHLAD----------------PRAVLRNLRRLLKPGGVL 98 (98)
T ss_pred HHHCCC----------------HHHHHHHHHHHCCCCCCC
T ss_conf 772589----------------999999999974999899
No 98
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=97.66 E-value=0.00012 Score=54.09 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=85.3
Q ss_pred CCCCCCCCCC--CCCCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 2123222356--3213310035564470000102568-410001059679877654432048874177207744577434
Q gi|254780666|r 229 SASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 (445)
Q Consensus 229 aSql~~~~l~--~~~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~ 305 (445)
..+++...|. ..+|++|||+.||-|-=+..-+..+ .+|+|+|+++.-++..++|+++.|+.... ....... ....
T Consensus 146 TT~lcl~~l~~~~~~~~~vlD~GcGSGILaIaA~klGa~~v~a~DiDp~Av~~a~eN~~~N~v~~~~-~~~~~~~-~~~~ 223 (294)
T pfam06325 146 TTALCLEALESLVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQL-EVYLPGD-LPEG 223 (294)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCE-EEECCCC-CCCC
T ss_conf 7999999998650369867850565089999999759996899988899999999999976998317-9964431-5566
Q ss_pred CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 306 ~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
+||.|+. +=++..-.++.....+.|+|||+|+-| -|+.+.-+.|. ..++.
T Consensus 224 ~~DlIvA-------------------------NIla~~L~~l~~~~~~~l~~~G~lilS--Gil~~q~~~v~-~a~~~ 273 (294)
T pfam06325 224 KADVVVA-------------------------NILADPLIELAPDIYALVKPGGYLILS--GILEEQADDVA-EAYSQ 273 (294)
T ss_pred CCCEEEE-------------------------HHCHHHHHHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHH-HHHHC
T ss_conf 4578984-------------------------108999999999999973899899991--78289999999-99986
No 99
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=97.62 E-value=0.00013 Score=53.86 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=97.6
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEE
Q ss_conf 23563213310035564470000102---5684100010596798776544320488741772077445774-3447668
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~i 310 (445)
..++.+.|..+||+|||-+-=+..|. ...|.|...|.|+.-+...++..+...+.++.++.+.+..++. ++.||.|
T Consensus 39 ~~m~v~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~~~~~fdyv 118 (231)
T TIGR02752 39 KRMNVQKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPYDDNSFDYV 118 (231)
T ss_pred HHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCCCCCCCEE
T ss_conf 77656404121121037337888988861777716740035889999998887543200222305200178776661257
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 9616742110011011033328866778899999999999998608982899977478834399989999
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445)
-+--- +|.-||- .++|....+.+||||.+|-...|--.--.-.++-.+
T Consensus 119 tiGfG------lrnvPdy----------------~~vl~em~rv~kPGG~~~C~~tsqP~~~~~~q~y~~ 166 (231)
T TIGR02752 119 TIGFG------LRNVPDY----------------MTVLKEMARVVKPGGKVVCLETSQPTLPGFKQLYFF 166 (231)
T ss_pred EECCC------CCCHHHH----------------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 75255------1230269----------------999999888627997179862577625799999999
No 100
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.58 E-value=4.5e-05 Score=57.39 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=90.8
Q ss_pred CCCC--CCCCCCEECCCCCCCCCEE---EECCCCCCHHHHHCCHHHHHHHHHHHHC-----CCCCCEEEEECCCCC-CCC
Q ss_conf 2356--3213310035564470000---1025684100010596798776544320-----488741772077445-774
Q gi|254780666|r 235 QLFG--TLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR-----LHLYAEDIIEMDAFD-YCP 303 (445)
Q Consensus 235 ~~l~--~~~g~~VLD~CAAPGGKT~---~l~~~~~~i~A~D~~~~Rl~~l~~~~~R-----~g~~~~~~~~~D~~~-~~~ 303 (445)
.+|+ ..++.+|||..+|-|=.|+ +|...+|.|+++|.-+.=....+.+++. ||.+||.++.+|++. |..
T Consensus 74 ~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G~~~ 153 (228)
T TIGR00080 74 EYLENHLKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQGWEE 153 (228)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 98885214035566504785589999999871397189985357889999987654314440688658997788657102
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
...||+|++-|- +..+.+= -.+=|+.||+||-=. ..-.+++++..|-++
T Consensus 154 ~APYd~I~~~AA------------------~k~iP~A----------L~~QL~eGG~L~~Pv---~~~d~~Q~l~~~~k~ 202 (228)
T TIGR00080 154 KAPYDAILVTAA------------------AKEIPKA----------LIDQLEEGGILVLPV---GEVDEEQVLKRVEKR 202 (228)
T ss_pred CCCCCEEEEECC------------------CCCCCHH----------HHHHHHHCCEEEECC---EEECCCEEEEEEEEE
T ss_conf 488352775237------------------8987657----------899997289886200---000675379999870
Q ss_pred C
Q ss_conf 8
Q gi|254780666|r 384 S 384 (445)
Q Consensus 384 ~ 384 (445)
+
T Consensus 203 n 203 (228)
T TIGR00080 203 N 203 (228)
T ss_pred C
T ss_conf 8
No 101
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.56 E-value=3.7e-05 Score=57.97 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=84.0
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCC---CCCCCCC
Q ss_conf 235632133100355644700001025684-100010596798776544320488--7417720774457---7434476
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDY---CPKKLFD 308 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~--~~~~~~~~D~~~~---~~~~~fD 308 (445)
....|+.|++|||.|-|-|=-+..-++.++ .|+.+|++++=++..+-|==--++ .+++++.+|+.+. ..++.||
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred HEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCC
T ss_conf 24443668784432467138999998758748999960877277413588984202003178616599997418865301
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEECCCCHHHCHHHHHHH
Q ss_conf 689616742110011011033328866778899999999999998608982899-977478834399989999
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-YsTCSi~~eEne~vV~~f 380 (445)
.|+-|+| |..+.- .|. -.+.-..-.+.|+|||+|. |.--+=..--+-++-..+
T Consensus 208 aIiHDPP-------------RfS~Ag-eLY-----seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gV 261 (287)
T COG2521 208 AIIHDPP-------------RFSLAG-ELY-----SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGV 261 (287)
T ss_pred EEEECCC-------------CCCHHH-HHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 6860797-------------331023-576-----89999999997076980799727987402467714789
No 102
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=97.53 E-value=4.9e-05 Score=57.06 Aligned_cols=136 Identities=24% Similarity=0.295 Sum_probs=94.6
Q ss_pred CCEECCCCCCCCCCCCCC-----CCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHH----CCCCCC
Q ss_conf 101346321232223563-----2133100355644700001025--68410001059679877654432----048874
Q gi|254780666|r 222 VWWVQDASASIPVQLFGT-----LNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLD----RLHLYA 290 (445)
Q Consensus 222 ~~~VQD~aSql~~~~l~~-----~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~----R~g~~~ 290 (445)
.-.||-..+---+..|.- ....+|||+.||+|-=|-++++ +..+++|+|++...+...++... .....+
T Consensus 12 ~A~~Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~~~~GWW~~~~~~ 91 (272)
T TIGR02072 12 HAKIQREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEKLSEGWWQKNLKA 91 (272)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 67999999999999887407654455435651268548999999868800123333256789999974467886576045
Q ss_pred EEEEECCCCCCCC-CCC--CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 1772077445774-344--7668961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 291 EDIIEMDAFDYCP-KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 291 ~~~~~~D~~~~~~-~~~--fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
+..+++|+..... +.. ||.|.== =-+-|-.++ .+.|.+..+.|||||.|+.||=
T Consensus 92 ~~f~~gD~E~l~~~~~~~~~DLI~Sn------------~a~QW~~~~----------~~~l~~l~~~lk~gG~l~FStf- 148 (272)
T TIGR02072 92 VQFICGDIEKLPLEDSSFKFDLIVSN------------LALQWCDDL----------SQALSELARVLKPGGLLAFSTF- 148 (272)
T ss_pred HHHHHHHHHHCCCCCCCCEEEHHHHH------------HHHHHCCCH----------HHHHHHHHHHCCCCCEEEEEEC-
T ss_conf 66666377717887663034127563------------588710478----------8999999975287968998613-
Q ss_pred CCHHHCHHHHHHHHH
Q ss_conf 883439998999999
Q gi|254780666|r 368 LDKQDSEEVVQKVLR 382 (445)
Q Consensus 368 i~~eEne~vV~~fL~ 382 (445)
-.+|=.-++..-.
T Consensus 149 --~~~~l~El~~~~~ 161 (272)
T TIGR02072 149 --GPGTLKELRQSFG 161 (272)
T ss_pred --CCHHHHHHHHHHH
T ss_conf --5413499999999
No 103
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=97.51 E-value=6.8e-05 Score=56.03 Aligned_cols=105 Identities=29% Similarity=0.265 Sum_probs=86.4
Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CC-EEEEECCCCCCCCCCCCCEEEECCCC
Q ss_conf 32133100355644700001025684100010596798776544320488-74-17720774457743447668961674
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YA-EDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~-~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445)
+..|.+|||+.||.|-=|..|++.+++|.|+|||+.=++..+++.+..+. .| ++..++|-+.. ..++||.|++
T Consensus 52 ~l~G~~vlDAGCGtGllsi~LAk~GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~-~~G~fD~VV~---- 126 (224)
T TIGR02021 52 SLKGKKVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESL-ELGKFDAVVA---- 126 (224)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHH-CCCCCCEEEE----
T ss_conf 98767777558893154498884798686623768999999862100210167003545304441-3898555675----
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 211001101103332886677889999999999999860898289997
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
=|+-.....+|.. .+|.+-+.+.+.-=++-|+
T Consensus 127 ---------mDvlIHYp~~d~~-------~~l~~Laslt~~~~~ftfA 158 (224)
T TIGR02021 127 ---------MDVLIHYPAEDIA-------KALEHLASLTKERVIFTFA 158 (224)
T ss_pred ---------EHHHHHCCHHHHH-------HHHHHHHHHHCCCEEEEEC
T ss_conf ---------2122320222279-------9999988743586489867
No 104
>KOG2730 consensus
Probab=97.51 E-value=2.1e-05 Score=59.80 Aligned_cols=84 Identities=24% Similarity=0.350 Sum_probs=72.0
Q ss_pred CCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCC-----CCEEEECC
Q ss_conf 13310035564470000102568410001059679877654432048874-1772077445774344-----76689616
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL-----FDAVLVDA 314 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~-----fD~iLlDa 314 (445)
.-+.|+|+-+|-||-|.|.+.....|+|+|+++-|+...+.|++-.|+.+ |..+++|..+....-+ +|.|.+-+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred CCCHHHHHHHCCCCHHHHHHHHCCEEEEEECCHHHHHHHHCCCEEECCCCEEEEEECHHHHHHHHHHHHHHEEEEEECCC
T ss_conf 74300254536884288998718807998526788887760650325775058883309999998864101045661699
Q ss_pred CCCCCCHHHC
Q ss_conf 7421100110
Q gi|254780666|r 315 PCSSTGTIRR 324 (445)
Q Consensus 315 PCSg~Gt~rr 324 (445)
|=+|.|-.+.
T Consensus 174 pwggp~y~~~ 183 (263)
T KOG2730 174 PWGGPSYLRA 183 (263)
T ss_pred CCCCCCHHHH
T ss_conf 9999631332
No 105
>KOG1270 consensus
Probab=97.51 E-value=0.00032 Score=51.02 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC------EEEEECCCCCCCCCCCCCEEE
Q ss_conf 63213310035564470000102568410001059679877654432048874------177207744577434476689
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA------EDIIEMDAFDYCPKKLFDAVL 311 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~------~~~~~~D~~~~~~~~~fD~iL 311 (445)
.|..|++|||+.||-|-=|-+|+..++.|+++|.+..-++..++...-.-..+ ++..+.|+... .++||.|+
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVv 163 (282)
T KOG1270 86 KPLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVV 163 (282)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHC--CCCCCEEE
T ss_conf 4557864787236755023235750885685265599999998751049033056414630201533214--56564544
Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 6167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
+ | ++-+..+--.+.|+..+..|||||+|+-+|=
T Consensus 164 c----s------------------evleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270 164 C----S------------------EVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred E----H------------------HHHHHHHCHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 1----9------------------8999874789999999998488982586411
No 106
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=97.47 E-value=0.0011 Score=47.10 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=87.5
Q ss_pred CCCCCEECCCCCCCCCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 213310035564470000--102568410001059679877654432048874177207744577434476689616742
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCS 317 (445)
.++.+|+|+.+|+|==.. .++....+++-+|...+|..-+++-..++|++|+.+++..+.++....+||.|..=|
T Consensus 68 ~~~~~vlDiGSGaGfPGiplAI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~itsRA--- 144 (216)
T PRK00107 68 EKPIRVLDVGSGAGFPGIPLAIARPDLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA--- 144 (216)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEEEH---
T ss_conf 65877997079999426789997787729997387699999999999769998799863544046567866898605---
Q ss_pred CCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 11001101103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 318 g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
-..+. .+++-+.+++++||+++.--=. ..+|-.+-.++.++...
T Consensus 145 ----------------va~l~-------~l~~~~~~~l~~~g~~i~~KG~-~~~~Ei~~a~~~~~~~~ 188 (216)
T PRK00107 145 ----------------VASLS-------DLVELCLPLLKPGGRFLALKGQ-DPEEEIAELPKAIKKLG 188 (216)
T ss_pred ----------------HHCHH-------HHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHHHHCC
T ss_conf ----------------40699-------9999999754889799998799-95999999898999839
No 107
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.47 E-value=0.00017 Score=53.17 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=89.8
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCE
Q ss_conf 23222356321331003556447000010256-84100010596798776544320488741772077445774344766
Q gi|254780666|r 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 (445)
Q Consensus 231 ql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~ 309 (445)
..++.-|+.+||++|||.-||=||=+.+.+.+ +.+|+++-+|+...+-.+++++ |+. +++...|-+++ .++||+
T Consensus 157 ~~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~~g~~VtgiTlS~eQ~~~a~~r~~--gl~-v~v~l~DYRd~--~g~fD~ 231 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLP-VEIRLQDYRDL--NGQFDR 231 (383)
T ss_pred HHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC--CCC-CEEEECCHHHC--CCCCCE
T ss_conf 9999864899999798857874999999999749759998588999999999973--898-78997152443--677355
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 896167421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
|. +.|++-. .-. +-...-.....++|||||.++-=|=++. +.......|+.++
T Consensus 232 Iv------SIeM~Eh-------VG~-------~~~~~yF~~i~~lLkp~G~~~lqtI~~~--~~~~~~d~fI~kY 284 (383)
T PRK11705 232 IV------SVGMFEH-------VGP-------KNYRTYFEVVDRCLKPDGLFLLHTIGSN--KTDTNVDPWINKY 284 (383)
T ss_pred EE------EEEHHHH-------CCH-------HHHHHHHHHHHHHCCCCCEEEEEEECCC--CCCCCCCHHHHHH
T ss_conf 99------9714865-------287-------7799999999985699973999993366--7777655128884
No 108
>KOG2915 consensus
Probab=97.44 E-value=0.00021 Score=52.41 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=88.2
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCC---C
Q ss_conf 32223563213310035564470000102---5684100010596798776544320488-741772077445774---3
Q gi|254780666|r 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCP---K 304 (445)
Q Consensus 232 l~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~---~ 304 (445)
++...|+..||.+|+....|.|+=|..++ +..|+++..|.+..|.+...+..++.|+ .|+.++.-|...... .
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
T ss_conf 99998657999789863788634889999863767626999832878999999999737786348999641567735313
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 44766896167421100110110333288667788999999999999986089828999774788343999899999
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445)
.++|.|.||-| ..|. -+-+|++.+|.+|. --||+.|. -+||++-.
T Consensus 176 ~~aDaVFLDlP------------aPw~---------------AiPha~~~lk~~g~---r~csFSPC--IEQvqrtc 220 (314)
T KOG2915 176 LKADAVFLDLP------------APWE---------------AIPHAAKILKDEGG---RLCSFSPC--IEQVQRTC 220 (314)
T ss_pred CCCCEEEECCC------------CHHH---------------HHHHHHHHHHHCCC---EEEECCHH--HHHHHHHH
T ss_conf 42356997589------------8055---------------22336777540682---59962178--99999999
No 109
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=97.41 E-value=8.7e-05 Score=55.24 Aligned_cols=122 Identities=16% Similarity=0.309 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC------------
Q ss_conf 22356321331003556447000010256841000105967987765443204887417720774457------------
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY------------ 301 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~------------ 301 (445)
..++.-..|...|.+=||-|.=|+.|+.+--+|.|.||++.-+.....|++.-++.||.++..-|.++
T Consensus 196 ~~~~~~~~g~DLLELYCGNGNFsLaLA~~f~rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEEft~A~~~~R~F~R 275 (361)
T TIGR02143 196 LEVTQNSKGMDLLELYCGNGNFSLALAQNFERVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEEFTEAMNGVREFRR 275 (361)
T ss_pred HHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99835888872010002675310445653334554302402479999998717988310102327999998603776546
Q ss_pred -CC------CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCH
Q ss_conf -74------34476689616742110011011033328866778899999999999998608982899977478834399
Q gi|254780666|r 302 -CP------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 (445)
Q Consensus 302 -~~------~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne 374 (445)
.. .-.|..|+||||=||. ++ ..+++++.-++|+|+-| +|+==-
T Consensus 276 L~d~gIdL~~Y~f~tiFVDPPRaGl-------------D~---------------~t~~Lv~~y~rIlYISC--NP~TL~ 325 (361)
T TIGR02143 276 LKDGGIDLKSYNFNTIFVDPPRAGL-------------DP---------------DTVKLVQKYERILYISC--NPETLK 325 (361)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCC-------------CH---------------HHHHHHHHCCCEEEEEC--CHHHHH
T ss_conf 5668863342025602677988888-------------98---------------99999962598799846--968999
Q ss_pred HHHHHHHHHCC
Q ss_conf 98999999688
Q gi|254780666|r 375 EVVQKVLRSSP 385 (445)
Q Consensus 375 ~vV~~fL~~~~ 385 (445)
+.++..-+.|.
T Consensus 326 ~NL~~L~~TH~ 336 (361)
T TIGR02143 326 ENLEQLSETHR 336 (361)
T ss_pred HHHHHHHHCCE
T ss_conf 99998860653
No 110
>KOG1271 consensus
Probab=97.36 E-value=0.00023 Score=52.13 Aligned_cols=120 Identities=27% Similarity=0.298 Sum_probs=89.9
Q ss_pred CEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC-CCCCCEEEECCCCCCC
Q ss_conf 1003556447000010256--8410001059679877654432048874-1772077445774-3447668961674211
Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 (445)
Q Consensus 244 ~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~ 319 (445)
+|||+.+|-|-=-.+|++- .+.++.+|-|++.++..+.-++|-|++| |...+.|.++... ..+||.||= -
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD------K 143 (227)
T KOG1271 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD------K 143 (227)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEE------C
T ss_conf 1166157961889998871388886453157889999987887527885316887322577555543238960------5
Q ss_pred CHH---HCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 001---1011033328866778899999999999998608982899977478834399989999
Q gi|254780666|r 320 GTI---RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 320 Gt~---rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445)
||+ .=+||-+-. ++ .--+...-++|+|||+.|-..|-.+..|=++.++.+
T Consensus 144 GT~DAisLs~d~~~~-------r~----~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~ 196 (227)
T KOG1271 144 GTLDAISLSPDGPVG-------RL----VVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF 196 (227)
T ss_pred CCEEEEECCCCCCCC-------CE----EEEHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCC
T ss_conf 741225507777665-------43----443556863038896799985576589999997259
No 111
>PRK04266 fibrillarin; Provisional
Probab=97.29 E-value=0.00085 Score=47.88 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCEE
Q ss_conf 5632133100355644700001025--684100010596798776544320488741772077445774----3447668
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAV 310 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~i 310 (445)
+.+.||.+||=+.||-|+--.|+.. .+|.|+|+|.|++-++.|-.-+++- +|+..+-.||+.+.. -++.|.|
T Consensus 68 ~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R--~NivPIl~DAr~P~~Y~~~v~~VD~i 145 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEER--KNIIPILGDARKPEEYAHLVEKVDVI 145 (226)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHCCCCCEE
T ss_conf 6758998799954777984888987517964999982707789999998508--99625754678845644205656589
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEE
Q ss_conf 961674211001101103332886677889999999999999-86089828999
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI-SFVKPGGIVVF 363 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~-~~lk~gG~lvY 363 (445)
..|+. .| -|.+|+...+ .+||+||.++-
T Consensus 146 ~qDvA---------Q~----------------dQa~I~~~Na~~FLk~gG~~~l 174 (226)
T PRK04266 146 YQDVA---------QP----------------NQAEIAADNADIFLKPGGYLML 174 (226)
T ss_pred EEECC---------CH----------------HHHHHHHHHHHHHHHCCCEEEE
T ss_conf 96067---------74----------------2899999999986015988999
No 112
>KOG2671 consensus
Probab=97.28 E-value=0.00073 Score=48.39 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHH-------HHHHHHHCCCCCC--EEEEECCCCC
Q ss_conf 123222356321331003556447000010256841000105967987-------7654432048874--1772077445
Q gi|254780666|r 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE-------KLRCNLDRLHLYA--EDIIEMDAFD 300 (445)
Q Consensus 230 Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~-------~l~~~~~R~g~~~--~~~~~~D~~~ 300 (445)
|-+-+......||+.|.|--.|-||=-..-+.-++.++..||+-+-++ -++.|.+..|... ..+..+|..+
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCCEEEEHHHHCCEEECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEECCCC
T ss_conf 88875553067998874476566742666223063564124531201134577742667687747753203204510567
Q ss_pred CC--CCCCCCEEEECCCCC---CCCHHHCCCHHHHCCCHH----------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 77--434476689616742---110011011033328866----------778899999999999998608982899977
Q gi|254780666|r 301 YC--PKKLFDAVLVDAPCS---STGTIRRHPDVLWTRDTD----------DIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 301 ~~--~~~~fD~iLlDaPCS---g~Gt~rr~Pd~~w~~~~~----------~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
.. ....||.|++|+|-- |.-...++--+ +.+.+ ....+..+--.+|.=+++.|..||+||.=-
T Consensus 277 ~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~--r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671 277 PPLRSNLKFDAIVCDPPYGVREGARKTGKKKSV--RTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred CCHHHCCEEEEEEECCCCCHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 630103233378727981145666654145765--575212433557764466799997508876376630285589834
Q ss_pred CCCCHHHCHHHHHHHHHHCC
Q ss_conf 47883439998999999688
Q gi|254780666|r 366 CSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 366 CSi~~eEne~vV~~fL~~~~ 385 (445)
|--+|+....-+-.|+
T Consensus 355 ----p~~~e~~~~~~~P~h~ 370 (421)
T KOG2671 355 ----PTITEEYGEDDIPSHP 370 (421)
T ss_pred ----CCHHHCCCCCCCCCCC
T ss_conf ----7412125743477773
No 113
>PRK06922 hypothetical protein; Provisional
Probab=97.28 E-value=0.00075 Score=48.30 Aligned_cols=129 Identities=16% Similarity=0.304 Sum_probs=84.0
Q ss_pred CCCCCCCCCEECCCCCCCCCEEE-EC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---CCCCC
Q ss_conf 35632133100355644700001-02---5684100010596798776544320488741772077445774---34476
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQ-LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFD 308 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~-l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---~~~fD 308 (445)
+|+-..|.+++|. ||||--.. +. -.+..|+.+|+|.+=++.|++.-.+-| .+-+++.+||.++.. .+..|
T Consensus 415 Ildyi~G~~ivdi--G~GGGVMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~-ksW~V~~gDAL~l~d~f~~eSvd 491 (679)
T PRK06922 415 ILDYIKGDTIVDV--GAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVD 491 (679)
T ss_pred EEECCCCCEEEEE--CCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCC-CCCEEECCCCCCCHHHCCCCCCC
T ss_conf 4200147679986--69962148766765899861466660889999988777548-98423214303615434756664
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHH
Q ss_conf 6896167421100110110333288667788999999999999986089828999774788343999899
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~ 378 (445)
.|. ||+. .-|+---..-+...-....-.+.|..|...|||||+++-----++ |+.+-.+
T Consensus 492 Tiv----~sSI-----lHElfSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIRDGImT--E~kd~~r 550 (679)
T PRK06922 492 TIV----YSSI-----LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT--EDKRLMR 550 (679)
T ss_pred EEE----EHHH-----HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCHHHHH
T ss_conf 687----4277-----888886345667134799999999999987288864999457536--8887787
No 114
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=97.26 E-value=0.00044 Score=50.02 Aligned_cols=126 Identities=15% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCC----CCCCCCCEEEEC
Q ss_conf 1331003556447000010256--841000105967987765443204-887417720774457----743447668961
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDAFDY----CPKKLFDAVLVD 313 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~-g~~~~~~~~~D~~~~----~~~~~fD~iLlD 313 (445)
++-.+||.++|-|+-+++++.. +-..+++|+...++..+.+.+... ++.|+.++..|+..+ .+.+.+|.|.+=
T Consensus 20 ~~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~~~~~~~~l~~i~i~ 99 (199)
T pfam02390 20 EQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLPNLFPDGSLQKIFIN 99 (199)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEE
T ss_conf 99449997368889999999978998789999505999999999998457773787604799999975798864279996
Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 674211001101103332886677889999999999999860898289997747883439998999999
Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445)
=| +| |-++...-. --+|.+.|+...+.|++||.+.-+|=.-.-. +.+.+.|.+
T Consensus 100 FP---------DP---WpKkrH~KR--Rli~~~fl~~~~~~Lk~gG~l~~~TD~~~y~--~~~~e~~~~ 152 (199)
T pfam02390 100 FP---------DP---WPKKRHHKR--RLLQPEFLKEYARVLKPGGVLHLATDVEEYF--EWMLEHLSE 152 (199)
T ss_pred CC---------CC---CCCCCCCCC--CCCCHHHHHHHHHHCCCCCEEEEEECCHHHH--HHHHHHHHH
T ss_conf 79---------99---876442440--0079999999999638898999982899999--999999996
No 115
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.25 E-value=0.00045 Score=49.98 Aligned_cols=130 Identities=17% Similarity=0.244 Sum_probs=97.0
Q ss_pred CCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCCCCEEEECC
Q ss_conf 1331003556447000010256--841000105967987765443204887417720774457----7434476689616
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY----CPKKLFDAVLVDA 314 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~----~~~~~fD~iLlDa 314 (445)
....+||.++|-|.-+.+++.. .-..+++|++...+..+...+...++.|+.++..|+... .+.+.+|.|.+==
T Consensus 54 ~~p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~i~F 133 (229)
T PRK00121 54 DAPIHLEIGFGRGEFLVEMAKANPDINFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIYLNF 133 (229)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEECC
T ss_conf 99439996158969999999868888689999616999999999998299838988347899999714645414046717
Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC
Q ss_conf 7421100110110333288667788999999999999986089828999774788343999899999968874
Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 (445)
Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~ 387 (445)
| | .|-+.... +---+|.+.|+...+.|++||.+.-+|=+-.-. +.+...+..++.+
T Consensus 134 P-----------D-PWpKkrH~--KRRli~~~fl~~~~~~Lk~~G~i~~~TD~~~Y~---~~~~e~~~~~~~f 189 (229)
T PRK00121 134 P-----------D-PWPKKRHH--KRRLVQPEFLELYARVLKPGGEFHFATDWEEYA---EYMLEVFGAHPGF 189 (229)
T ss_pred C-----------C-CCCCCCCC--CCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHH---HHHHHHHHHCCCC
T ss_conf 9-----------9-99763202--401289999999998579998899981879999---9999999868693
No 116
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.00081 Score=48.07 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCHHHH--HHHHHHHHCCCCCCEECCCCCCHHHCHHHHHCCCEE
Q ss_conf 997899998841267999999996146983667615998999--986432102356611104567855585011001013
Q gi|254780666|r 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW--AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 (445)
Q Consensus 148 ~P~Wl~~~~~~~~G~~~~~~l~~~~~~p~~l~i~~k~~~~~~--~~~L~~~~~~~~~~~~~~~~~~i~~~~~f~eG~~~V 225 (445)
.-+++++++...++... ......|-++|++-...+.+ .-.+.+..+..-+.|+..++.++.++=+
T Consensus 114 vkdAIvd~~~~~~~~r~-----~v~~~~Pdv~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLA-------- 180 (381)
T COG0116 114 VKDAIVDRFRRKYGRRP-----SVDLDGPDVRINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLA-------- 180 (381)
T ss_pred HHHHHHHHHHHCCCCCC-----CCCCCCCCEEEEEEEECCEEEEEEECCCCCHHHCCCCCCCCCCCCHHHHH--------
T ss_conf 99999999755028898-----74445898699999975778999967886321065614688878569999--------
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEE--EECC-C-------------------------------CC-------
Q ss_conf 46321232223563213310035564470000--1025-6-------------------------------84-------
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTA--QLIV-S-------------------------------GA------- 264 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~--~l~~-~-------------------------------~~------- 264 (445)
.....+.+..+++..+|--||.|+=.. .||. | .+
T Consensus 181 -----aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 181 -----AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred -----HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf -----999997399999834168877347999999734456876332200455432138889999999999865147666
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCC-CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHH
Q ss_conf 10001059679877654432048874-17720774457743-44766896167421100110110333288667788999
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~-~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~ 342 (445)
.++++|++.+-++..+.|++++|+.. |+..+.|+..+.+. +.+|.|+.++|-- . |+..+ ....+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYG----------e--Rlg~~--~~v~~ 321 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYG----------E--RLGSE--ALVAK 321 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCEEEECCCCH----------H--HCCCH--HHHHH
T ss_conf 5898748989999999989976988328999744321668766699899589830----------1--11770--46999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 999999999986089828999774788
Q gi|254780666|r 343 FQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445)
Q Consensus 343 ~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445)
|-.++.....+.++..++.|.+|=.-+
T Consensus 322 LY~~fg~~lk~~~~~ws~~v~tt~e~~ 348 (381)
T COG0116 322 LYREFGRTLKRLLAGWSRYVFTTSEDL 348 (381)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 999999999987257736999766778
No 117
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.22 E-value=0.00021 Score=52.37 Aligned_cols=105 Identities=22% Similarity=0.256 Sum_probs=82.1
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCC
Q ss_conf 56321331003556447000010256841000105967987765443204887417720774457743447668961674
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445)
+...+..++||+.||-|--|+-|+..+-.|+|+|+++.-++.+++-++.-|+ ++.+...|.......+.||.|+-
T Consensus 118 ~~~i~pgkaLDLGCG~GRNsLyLa~~GfdVTA~D~N~~sl~~L~~ia~~E~L-~i~~~~yDIN~a~l~~~YDfI~S---- 192 (289)
T PRK12335 118 AKTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQASLENLQQIAEKENL-NIRAGSYDINSASLQEEYDFILS---- 192 (289)
T ss_pred HHHCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCC-CCCCEEECCCCCCCCCCCCEEEE----
T ss_conf 7526887466604788822788975798425886899999999999997198-87725751666666777678999----
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2110011011033328866778899999999999998608982899
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
|.|+- -+.++.+. .|+.+.-..-.|||+=+
T Consensus 193 --TVV~m-------FL~~~~ip-------~iI~nMQ~~T~~gGyNl 222 (289)
T PRK12335 193 --TVVLM-------FLNPERIP-------DIIKNMQEHTNPGGYNL 222 (289)
T ss_pred --EEEEE-------EECHHHHH-------HHHHHHHHHCCCCCEEE
T ss_conf --67886-------42877869-------99999998447998689
No 118
>PTZ00146 fibrillarin; Provisional
Probab=97.18 E-value=0.0031 Score=43.77 Aligned_cols=117 Identities=26% Similarity=0.240 Sum_probs=86.1
Q ss_pred CCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCE
Q ss_conf 563213310035564470000102---5684100010596798776544320488741772077445774----344766
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDA 309 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~ 309 (445)
+..+||.+||=+-||-|.--.|+. ..+|.|+|+|.|++-.+.|-.-+++- +|+..+..||+.+.. -+..|.
T Consensus 131 i~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R--~NIvPIleDAr~P~kYr~lV~~VDv 208 (296)
T PTZ00146 131 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRR--TNIVPIIEDARYPQKYRMLVPMVDC 208 (296)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHCCCCCE
T ss_conf 44379998998514679865566650178861999970646688999997227--9833577778974675542455558
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHH-HHHHHHCCCCCEEEEE---ECCCCHHHCHHHHHHH
Q ss_conf 896167421100110110333288667788999999999-9999860898289997---7478834399989999
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL-LQGISFVKPGGIVVFS---NCSLDKQDSEEVVQKV 380 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL-~~a~~~lk~gG~lvYs---TCSi~~eEne~vV~~f 380 (445)
|..|++ +| -|.+|+ .||-.+||+||.++-| .|-=...+.++|.+.-
T Consensus 209 If~DVA---------Qp----------------dQarI~~~Na~~FLK~gG~~~i~IKArsIDst~~p~~VF~~E 258 (296)
T PTZ00146 209 IFADVA---------QP----------------DQARIVALNAQHFLKNGGHFVISIKANCIDSTADPEVVFASE 258 (296)
T ss_pred EEECCC---------CH----------------HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 996178---------76----------------589999999998531698899999726632567989999999
No 119
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.17 E-value=0.00057 Score=49.17 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=90.2
Q ss_pred CCEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCCCCEEEECCCC
Q ss_conf 310035564470000102568--41000105967987765443204887417720774457----743447668961674
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY----CPKKLFDAVLVDAPC 316 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~----~~~~~fD~iLlDaPC 316 (445)
-.+|+.|+|-|.=+++++... -..+++|++...+..+.+.+.++|+.|+.+++.||... .+++..|+|.+-=|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 66999688898789999987898778999973489999999999829984699807799999735898856579997999
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 211001101103332886677889999999999999860898289997747
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
.|-+....-.+ -+|...|...++.|+|||.|-.+|=.
T Consensus 130 ------------PWpKkRH~KRR--l~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 130 ------------PWPKKRHHKRR--LTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred ------------CCCCCCCCCCC--CCCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf ------------99876643321--47889999999972689789997267
No 120
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=97.15 E-value=0.00076 Score=48.27 Aligned_cols=73 Identities=23% Similarity=0.217 Sum_probs=32.2
Q ss_pred CCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCC--CCCCCCEEEECC
Q ss_conf 3310035564470000102---568410001059679877654432048874-177207744577--434476689616
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC--PKKLFDAVLVDA 314 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~--~~~~fD~iLlDa 314 (445)
+-+|||+=||-|-.+.-.+ .+-..|+++|+++...+.+++|++-.++.+ +.+.+.|+..+- ....||.|=||+
T Consensus 50 ~~~iLDalsasGiR~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~lN~~~~~~~~~~~DAn~lm~~~~~~fD~IDlDP 128 (375)
T pfam02005 50 GIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMRENHRRFDVIDLDP 128 (375)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCEEEECC
T ss_conf 8669754675419999999746998669995599899999999888659987378754759999985588675686789
No 121
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=97.00 E-value=0.003 Score=43.84 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=86.8
Q ss_pred CCCEECCCCCCCCCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 3310035564470000--10256841000105967987765443204887417720774457743447668961674211
Q gi|254780666|r 242 NLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445)
+.+|+|+.+|+|==.. .++..+..++-+|.+.+|..-++.-.+++|+.|+.+++..+.++....+||.|..=
T Consensus 49 ~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~~~~~D~v~aR------ 122 (184)
T pfam02527 49 RIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQHEEQYDVITSR------ 122 (184)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEEC------
T ss_conf 98688347988846799999677855999928289999999999985999769995604414644678789981------
Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 00110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
.-..+. .+++-+..++++||+++..-=--..+|-++. ++.++.-
T Consensus 123 -------------A~a~l~-------~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a-~~~~~~l 166 (184)
T pfam02527 123 -------------AVASLN-------ELTEWALPLLKPGGYFLAYKGKQAEDEIEEL-DKACQKL 166 (184)
T ss_pred -------------HHCCHH-------HHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHHHH
T ss_conf -------------005799-------9999999863889899998899989999987-8779982
No 122
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=96.99 E-value=0.0019 Score=45.38 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=105.4
Q ss_pred CCCCCCCCCCCCCC-EECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 23222356321331-00355644700001025684-10001059679877654432048874177207744577434476
Q gi|254780666|r 231 SIPVQLFGTLNNLS-VLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308 (445)
Q Consensus 231 ql~~~~l~~~~g~~-VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD 308 (445)
.|....|...+++. ||...+|-|==+..+...+. .|+++|+|+...+.+++|+.=.| .++.++..|-.+.-..+|||
T Consensus 10 ~LL~~nL~~~k~ddeVlEiG~GtGlvair~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~-~~l~v~~~Dlf~~v~geKFd 88 (183)
T TIGR00537 10 LLLEANLRELKPDDEVLEIGAGTGLVAIRLKEKGKKKILTTDINPFAVKLLRENAKLNN-VELDVLETDLFEGVRGEKFD 88 (183)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCC-CCEEEEECCCCCCCCCCCEE
T ss_conf 99999867516995289971680489999851588207886368799998773100026-64047611135785555102
Q ss_pred EEEECCCCC---CCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 689616742---11001101103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 309 AVLVDAPCS---STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 309 ~iLlDaPCS---g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
.||--+|-= +--...--=|+.|.--++.. ++=.+-|+..-.+||+||+..-.--|++.+ ++++++. +...
T Consensus 89 viLFNpPYlp~~~d~~~gd~Ld~A~dGGkdGr----~vidrFldelp~~lk~gGrv~l~~SSl~~e--~~~~~kl-~~~G 161 (183)
T TIGR00537 89 VILFNPPYLPLEDDEKRGDYLDLAIDGGKDGR----KVIDRFLDELPEYLKEGGRVQLIQSSLSDE--KDTLDKL-DELG 161 (183)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCCH----HHHHHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHH-HHCC
T ss_conf 77307898888765234766443331787305----788888765688870599899996066886--8899887-6158
Q ss_pred CCEEEC
Q ss_conf 741781
Q gi|254780666|r 386 IPVELV 391 (445)
Q Consensus 386 ~~~~~~ 391 (445)
+..+..
T Consensus 162 F~~ei~ 167 (183)
T TIGR00537 162 FKVEIV 167 (183)
T ss_pred CCEEEE
T ss_conf 847998
No 123
>KOG1099 consensus
Probab=96.86 E-value=0.0018 Score=45.40 Aligned_cols=112 Identities=29% Similarity=0.396 Sum_probs=71.3
Q ss_pred CCCEECCCCCCCCCEEEE----C---CCCC----CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------
Q ss_conf 331003556447000010----2---5684----10001059679877654432048874177207744577--------
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQL----I---VSGA----KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------- 302 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l----~---~~~~----~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-------- 302 (445)
-++|.|+|||||.=|-.| . .+.+ .|+|+|+-+ | .-+..|..+++|.+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------M--aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------M--APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECCC---------C--CCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 3677435308983999999997324887420116279985565---------7--7667627850455777689999998
Q ss_pred -CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH----HCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf -434476689616742110011011033328866778899999999999998----608982899977478834399989
Q gi|254780666|r 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS----FVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 303 -~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~----~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
..++.|.|.+|-- ||+. --.|+.++. |.+||-.|.. .|||||.-|= -|+.-++...+
T Consensus 111 fggekAdlVvcDGA----------PDvT---GlHd~DEy~--Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslL 172 (294)
T KOG1099 111 FGGEKADLVVCDGA----------PDVT---GLHDLDEYV--QAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLL 172 (294)
T ss_pred HCCCCCCEEEECCC----------CCCC---CCCCHHHHH--HHHHHHHHHHHHHHEECCCCEEEH---HHHCCCCHHHH
T ss_conf 57997667884799----------8744---532088999--999999998777420147875255---46426750789
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780666|r 378 QKVLR 382 (445)
Q Consensus 378 ~~fL~ 382 (445)
..-|.
T Consensus 173 ysql~ 177 (294)
T KOG1099 173 YSQLR 177 (294)
T ss_pred HHHHH
T ss_conf 99999
No 124
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=96.82 E-value=0.0005 Score=49.61 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCCCC--CEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC---------CCEEEEECC
Q ss_conf 212322235632133--100355644700001025684100010596798776544320488---------741772077
Q gi|254780666|r 229 SASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL---------YAEDIIEMD 297 (445)
Q Consensus 229 aSql~~~~l~~~~g~--~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~---------~~~~~~~~D 297 (445)
-+|.++.++..+++. +|+|+.||=|.=++.|+..+..|+++|.|+-=...++..++|.-. .+..++++|
T Consensus 61 ~~e~l~KAvG~k~~~~p~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gd 140 (235)
T pfam04445 61 RGEAIAKAVGIKGGYLPTVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGS 140 (235)
T ss_pred CHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCC
T ss_conf 21589998667889998389878775788999981899699997889999999999999874815579999628998388
Q ss_pred CCCCC--CCCCCCEEEECCC
Q ss_conf 44577--4344766896167
Q gi|254780666|r 298 AFDYC--PKKLFDAVLVDAP 315 (445)
Q Consensus 298 ~~~~~--~~~~fD~iLlDaP 315 (445)
+.++- ....||.|.+|+=
T Consensus 141 s~~~l~~~~~~~DvIYLDPM 160 (235)
T pfam04445 141 SADQLEPNIDQPDVVYLDPM 160 (235)
T ss_pred HHHHHHHCCCCCCEEEECCC
T ss_conf 79997524689878997376
No 125
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=96.80 E-value=0.0044 Score=42.60 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=65.2
Q ss_pred CCCCCEECCCCCCCCCEEEECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 2133100355644700001025-684100010596798776544320488741772077445774344766896167421
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg 318 (445)
.++.+|||+|||-||=-.-... +=+.++++|++..-++..+++-..+.-.. ........|.......-|++
T Consensus 62 ~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vgiDis~~sI~~A~~RY~~~~~~~--------~~~~~~~~f~~~f~~~D~~~ 133 (327)
T pfam03291 62 KPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRS--------KSKYYKFDFIAEFITGDCFV 133 (327)
T ss_pred CCCCEEEEECCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCC--------CCCCCCCCCCEEEEECCCCH
T ss_conf 8898799836866445788974798689996689999999999999864211--------44445667500123156215
Q ss_pred CCHHHCCCH--HHHCCCH--HHHHH---HHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 100110110--3332886--67788---99999999999998608982899977
Q gi|254780666|r 319 TGTIRRHPD--VLWTRDT--DDIVK---SACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 319 ~Gt~rr~Pd--~~w~~~~--~~l~~---l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
.-.-..-++ .++..-. =.+.. --+.=+.+|.+++..|+|||+.+=.|
T Consensus 134 ~~l~~~~~~~~~~FDvVS~QFAiHY~Fese~~a~~~l~Nvs~~Lk~GG~FIGT~ 187 (327)
T pfam03291 134 SSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKFIGTT 187 (327)
T ss_pred HHHHHHCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 678775357788503775178789876489999999999998605898899996
No 126
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.75 E-value=0.00099 Score=47.42 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=78.6
Q ss_pred CCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCH
Q ss_conf 33100355644700001025684100010596798776544320488741772077445774344766896167421100
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt 321 (445)
.+.+.|+.||.|-=|.--+...-+|+|++.+++|...+++|++--|..|+++++.||+.+.. +..|.|++.-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEm------- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEM------- 104 (252)
T ss_pred HHCEEECCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC-CCCCEEHHHH-------
T ss_conf 41056346886328898875320278874180787776505777887646898055321332-3453408777-------
Q ss_pred HHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 11011033328866778899999999999998608982899
Q gi|254780666|r 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 322 ~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
-|-.-+-+-|...++++..+|+-.|.++
T Consensus 105 -------------lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 -------------LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -------------HHHHHHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf -------------6677633421289999999863388252
No 127
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.74 E-value=0.002 Score=45.11 Aligned_cols=122 Identities=24% Similarity=0.317 Sum_probs=86.1
Q ss_pred CCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 632133100355644700001025--684100010596798776544320488741772077445774344766896167
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445)
.+.+-.+|.|+.||||.-|-+|+. ..+.|+.+|-|..=+...++++ .+.....+|.++|.++..+|.+.-.|-
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~dllfaNAv 101 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTDLLFANAV 101 (257)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC-----CCCCEECCCHHHCCCCCCCCHHHHHHH
T ss_conf 866641034557788778899998688886760469999999999748-----997321052754499876330334436
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 42110011011033328866778899999999999998608982899977478834399989999996887
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~ 386 (445)
.-|--+ --++|.+-+..|.|||.|.--.=--+.|-.-.-+....++.|.
T Consensus 102 ------------lqWlpd----------H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~ 150 (257)
T COG4106 102 ------------LQWLPD----------HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPF 150 (257)
T ss_pred ------------HHHCCC----------CHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCH
T ss_conf ------------644364----------0899999998508885699978876476457999998742836
No 128
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=96.65 E-value=0.00089 Score=47.74 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC----CCCC
Q ss_conf 2235632133100355644700001025---68410001059679877654432048874177207744577----4344
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKL 306 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~----~~~~ 306 (445)
...|.|.++..++|+--|.||-|..+++ .+|+++|+|.++.-++..++.++..+ ..+.+++.+..++. ..++
T Consensus 16 l~~L~~~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~~-~r~~~~~~nF~~l~~~l~~~~~ 94 (309)
T PRK00050 16 VDGLAIKPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPFG-GRFTIVHGNFSDLAEYLAEVGK 94 (309)
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHCCC
T ss_conf 983682899999993889839999999727999889999898899999999865258-8289992779889999986388
Q ss_pred CCEEEECCCCCCC
Q ss_conf 7668961674211
Q gi|254780666|r 307 FDAVLVDAPCSST 319 (445)
Q Consensus 307 fD~iLlDaPCSg~ 319 (445)
+|.||+|-=+|+.
T Consensus 95 vdgil~DLGvSS~ 107 (309)
T PRK00050 95 VDGILLDLGVSSP 107 (309)
T ss_pred CCEEEEEEECCCH
T ss_conf 7789997224833
No 129
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=96.58 E-value=0.0013 Score=46.51 Aligned_cols=74 Identities=28% Similarity=0.377 Sum_probs=58.7
Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECCCCC
Q ss_conf 32133100355644700001025684100010596798776544320488741772077445774-34476689616742
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCS 317 (445)
..+|++..|+.|||||=|.+|...+-.|+|+|.-+ |...+--.| -|.-...|+..+.| ...+|.+.+|-=..
T Consensus 208 l~~Gm~aVDLGAaPGGWT~qLv~rg~~V~AVDnG~-----m~~~L~~~~--~V~H~~~dgf~f~P~~~~vdwlVCDmvek 280 (356)
T PRK11760 208 LASGMRAVDLGACPGGWTYQLVRRGMFVTAVDNGP-----MAESLMDTG--QVEHLRADGFKFRPTRKNVDWLVCDMVEK 280 (356)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCEEEEECCCC-----CCHHHHCCC--CEEEEECCCEEECCCCCCEEEEEEECCCC
T ss_conf 16997587558699705899997798899865876-----787575288--75788146705636998520899705368
Q ss_pred CC
Q ss_conf 11
Q gi|254780666|r 318 ST 319 (445)
Q Consensus 318 g~ 319 (445)
-.
T Consensus 281 P~ 282 (356)
T PRK11760 281 PA 282 (356)
T ss_pred HH
T ss_conf 89
No 130
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.54 E-value=0.0013 Score=46.59 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCC--CCCC--CCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCC--
Q ss_conf 632123222356--3213--31003556447000010256-8410001059679877654432048874-17720774--
Q gi|254780666|r 227 DASASIPVQLFG--TLNN--LSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298 (445)
Q Consensus 227 D~aSql~~~~l~--~~~g--~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~-- 298 (445)
=++.+|+.++|+ ..++ +.|+|+.||-|-=+...+.. -..++|+|+++--++..+.|+++.+++. ..+....+
T Consensus 178 H~TT~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vP 257 (330)
T TIGR00406 178 HPTTSLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVP 257 (330)
T ss_pred CHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 45789999987401477766547871267178999999751231122137728999999768745886457643205787
Q ss_pred -CCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf -4577434476689616742110011011033328866778899999999999998608982899977478834399989
Q gi|254780666|r 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 299 -~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
.+-..+.++|.|+. +=|+..=++++..+.+++|++|.++-| =|+.+ -.+.|
T Consensus 258 e~~~~~e~~~DViVA-------------------------NiLA~vi~~L~p~~~~L~~~~G~lilS--GIl~~-~~~sV 309 (330)
T TIGR00406 258 ELEQPIEGKADVIVA-------------------------NILAEVIKELYPQFSRLVKPGGHLILS--GILET-QAQSV 309 (330)
T ss_pred CCCCCCCCCCCEEEE-------------------------CCHHHHHHHHHHHHHHHCCCCCCEEEH--HHHHH-HHHHH
T ss_conf 534532256675788-------------------------002457876413551310689965741--34764-79999
Q ss_pred HHHHHHCCCCEEECCCC
Q ss_conf 99999688741781376
Q gi|254780666|r 378 QKVLRSSPIPVELVPLN 394 (445)
Q Consensus 378 ~~fL~~~~~~~~~~~~~ 394 (445)
...++.. .|.+.++.
T Consensus 310 ~~ay~q~--GF~~~~~~ 324 (330)
T TIGR00406 310 CEAYEQA--GFTVVEIL 324 (330)
T ss_pred HHHHHCC--CCEEHHHH
T ss_conf 9998557--94634346
No 131
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0024 Score=44.59 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=91.2
Q ss_pred CCCEECCCC-CCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 010134632-1232223563213310035564470000102568410001059679877654432048874177207744
Q gi|254780666|r 221 GVWWVQDAS-ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 (445)
Q Consensus 221 G~~~VQD~a-Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~ 299 (445)
|+-++.|.. -+-++...++.+++.||...+|.|.=|..|++...+|+|+|++..-+..|++.+. ...+..++++|+.
T Consensus 9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaL 86 (259)
T COG0030 9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDAL 86 (259)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC--CCCCEEEEECCHH
T ss_conf 64541478799999985578999869997898778899999606957999968899999997506--5665599947242
Q ss_pred CCCCCC--CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 577434--47668961674211001101103332886677-8899999999999998608982899977478
Q gi|254780666|r 300 DYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 (445)
Q Consensus 300 ~~~~~~--~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l-~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi 368 (445)
+..... .+++|.---|-+=|.-+=. +|-.....+ .-...+|++.-++- +.+-|.=-|+-=|+
T Consensus 87 k~d~~~l~~~~~vVaNlPY~Isspii~----kll~~~~~~~~~v~M~QkEvaeRl---~A~pgsk~Yg~LsV 151 (259)
T COG0030 87 KFDFPSLAQPYKVVANLPYNISSPILF----KLLEEKFIIQDMVLMVQKEVAERL---VAKPGSKDYGRLSV 151 (259)
T ss_pred CCCCHHHCCCCEEEECCCCCCCHHHHH----HHHHCCCCCCEEEEEEHHHHHHHH---HCCCCCCCCCHHHH
T ss_conf 475135157888998089765679999----998466765428998299999997---17889865206655
No 132
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=96.44 E-value=0.0016 Score=45.77 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------C
Q ss_conf 22235632133100355644700001025---68410001059679877654432048874177207744577------4
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------P 303 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------~ 303 (445)
+...|.+.++..++|+--|-||-|..|++ ..|+++|+|.++.-++..+++++..+ ..+.+++....++. .
T Consensus 12 vi~~L~~~~~g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~~-~r~~~~~~nF~~l~~~l~~~~ 90 (310)
T pfam01795 12 VVELLNIKPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPFK-GRVTLIHSNFANLFAYLKELG 90 (310)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHHHHCC
T ss_conf 9972683899999995889719999999848999979999898999999998530258-858999253757999998759
Q ss_pred CCCCCEEEECCCCCCC
Q ss_conf 3447668961674211
Q gi|254780666|r 304 KKLFDAVLVDAPCSST 319 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~ 319 (445)
-.++|.||+|-=+|+.
T Consensus 91 ~~~vdGil~DLGvSS~ 106 (310)
T pfam01795 91 VGKVDGILFDLGVSSP 106 (310)
T ss_pred CCCCCEEEEECCCCCH
T ss_conf 8766789996446814
No 133
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.42 E-value=0.0027 Score=44.15 Aligned_cols=164 Identities=18% Similarity=0.167 Sum_probs=100.3
Q ss_pred HCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE---CC-C--CCCHHHHHCCHHHHHHHHHHHHCCCCC-CEE
Q ss_conf 0010134632123222356321331003556447000010---25-6--841000105967987765443204887-417
Q gi|254780666|r 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV-S--GAKVTALDVSKRRLEKLRCNLDRLHLY-AED 292 (445)
Q Consensus 220 eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~-~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~ 292 (445)
.|.|+-=-.=+.+.+.++.|.+.++|+|-|||-||=-.+. +. . ...++..|++..-....+-|+-=.|+. ++.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78605879999999997577656523473354037999999999751555049989566889999996116627874223
Q ss_pred EEECCCCCCC------CCCCCCEEEECCCCCCCCHHHCCCHH--HHCCCHHHHHHHHHHH-HHHHHHHHHHCCCCC---E
Q ss_conf 7207744577------43447668961674211001101103--3328866778899999-999999998608982---8
Q gi|254780666|r 293 IIEMDAFDYC------PKKLFDAVLVDAPCSSTGTIRRHPDV--LWTRDTDDIVKSACFQ-RKLLLQGISFVKPGG---I 360 (445)
Q Consensus 293 ~~~~D~~~~~------~~~~fD~iLlDaPCSg~Gt~rr~Pd~--~w~~~~~~l~~l~~~Q-~~iL~~a~~~lk~gG---~ 360 (445)
+...|...-. ...+||.|+--+|=|++|...-.-+. .|+...........-. ..-+.+....++||| .
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~d~afi~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 43344236873323466555016865799554443443310024320002577888952789999999997186770589
Q ss_pred EEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 999774788343999899999968
Q gi|254780666|r 361 VVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 361 lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
++..-+ ++..=+|..|++.|-+.
T Consensus 325 vl~~gv-lfr~~~e~~IR~~l~~~ 347 (489)
T COG0286 325 VLPDGV-LFRGGAEKDIRKDLLED 347 (489)
T ss_pred EECCCC-CCCCCCHHHHHHHHHHH
T ss_conf 925886-62777225799998750
No 134
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=96.37 E-value=0.0076 Score=40.85 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=76.2
Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCCCCCCCH---HHC------CCHHH--
Q ss_conf 41000105967987765443204887417720774457743---44766896167421100---110------11033--
Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGT---IRR------HPDVL-- 329 (445)
Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaPCSg~Gt---~rr------~Pd~~-- 329 (445)
.+|+.+|++++-++-+.+.+++.|+ +++....|.++..|. ++||.++-|+|-|=.|. ++| .|-..
T Consensus 68 ~~I~VvDIDeRll~fI~~~A~~~gl-~i~~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~G~~LFlsRgi~~Lk~eg~agY 146 (243)
T pfam01861 68 KRIAVVDIDERLIKFIERVAKEEGL-KIEAFVHDLRNPLPEDLKHKFDVFITDPPETVDGLKAFLGRGIATLKGEGCAGY 146 (243)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 5489996758999999999997499-716887410148999996167989718998778999999999998266885226
Q ss_pred --HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCHHHCHHHHHHHHH
Q ss_conf --3288667788999999999999986089828999-7747883439998999999
Q gi|254780666|r 330 --WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF-SNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 330 --w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY-sTCSi~~eEne~vV~~fL~ 382 (445)
....+..+.+..++|+.|++-. ++ ++ ..=-++.-||.+.+..+..
T Consensus 147 fglt~~esS~~kw~~~Qk~l~~~g--~v------Itdii~~Fn~Y~~~~~~~~t~~ 194 (243)
T pfam01861 147 FGITHRESSLDKWREIQRMLIEMG--VV------ITDLIRNFNVYENWGYIEETRA 194 (243)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCC--EE------HHHHHHHHHCCCCCCHHHHHHH
T ss_conf 876426014999999999999859--20------9998766630567312332145
No 135
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=96.34 E-value=0.0059 Score=41.63 Aligned_cols=94 Identities=21% Similarity=0.188 Sum_probs=66.6
Q ss_pred CCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECCCCCCC
Q ss_conf 133100355644700001025684100010596798776544320488741772077445774-3447668961674211
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~ 319 (445)
...++||+.||-|+=|.+|+..-.+|+|.|.|.. |+.++++-|+..+. .+ ++.. ..+||.|-+ +
T Consensus 94 ~~~~LLDlGAGdG~VT~~la~~F~~V~aTE~S~~----Mr~rL~~rgf~vl~---~~--~~~~~~~~fDvIsc------L 158 (265)
T pfam05219 94 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWT----MRDRLKKKNYNVLT---EI--EWQETDVNLDLILC------L 158 (265)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCEEEEEECCHH----HHHHHHHCCCEEEE---EH--HCCCCCCCEEEEHH------H
T ss_conf 7664788358997899999975235888727899----99999975986875---01--20356874455422------2
Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 0011011033328866778899999999999998608982899977
Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
-++-|. .--..||....+.|+|+|+||-++
T Consensus 159 NvLDRc----------------~~P~~LL~~i~~~L~P~G~lilAv 188 (265)
T pfam05219 159 NLLDRC----------------FDPFKLLEDIHLALAPNGRVIVAL 188 (265)
T ss_pred HHHHCC----------------CCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 445313----------------886999999997249996799999
No 136
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=96.31 E-value=0.0086 Score=40.43 Aligned_cols=139 Identities=22% Similarity=0.136 Sum_probs=108.6
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHH-HCCHHHHHHHHHHHHCCCCCC--EEEEECCCCCCC
Q ss_conf 46321232223563213310035564470000102568410001-059679877654432048874--177207744577
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYC 302 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~-D~~~~Rl~~l~~~~~R~g~~~--~~~~~~D~~~~~ 302 (445)
.-.-+...+.+....+|+.++|-.||.||-.....--+..++.+ |+...-....+.|++..++.. ..+...|+....
T Consensus 188 ~p~~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (358)
T TIGR01177 188 DPKLARALVNLAGVKEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLP 267 (358)
T ss_pred CHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCC
T ss_conf 54677777654202467510042226660332333321100024403567642521113330554315676403300111
Q ss_pred CC-----CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 43-----4476689616742110011011033328866778899999999999998608982899977478834399989
Q gi|254780666|r 303 PK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 303 ~~-----~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
.. +.+|.+..|+|-.-+ +...-..+..+....++.....++++|..+++.-+-..-+....-
T Consensus 268 ~~~~~~~~~~~~~~~d~p~g~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 334 (358)
T TIGR01177 268 LRLPGLDESVDAIATDPPYGRS-------------TTAAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTDLDLESLAEG 334 (358)
T ss_pred CCCCCCHHHHHHHHCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf 0035310112222125654531-------------112210368888888888888642687179974033464665411
No 137
>KOG1098 consensus
Probab=96.31 E-value=0.0026 Score=44.27 Aligned_cols=41 Identities=7% Similarity=0.128 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 999999999998608982899977478834399989999996
Q gi|254780666|r 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 342 ~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
+-++....+.-+.-|.- -+|--|--++..|--.+|.+..++
T Consensus 688 RKkrra~kRLek~kKKA-e~I~d~~d~te~eK~kei~klykk 728 (780)
T KOG1098 688 RKKRRAQKRLEKVKKKA-ELISDTSDITEREKAKEIKKLYKK 728 (780)
T ss_pred HHHHHHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88899999999999875-212565210126789999999997
No 138
>KOG1663 consensus
Probab=96.30 E-value=0.0042 Score=42.73 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=85.1
Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEE---ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCC
Q ss_conf 013463212322235632133100355644700001---02568410001059679877654432048874-17720774
Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA 298 (445)
Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~---l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~ 298 (445)
..|-+.-.|++..++.....+++||+..=-|=-.+. ....+|+|+|+|++..-.+...+-.++.|... |.++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 42376887999999998587338998121278999999745999659999618688887599998606330342342525
Q ss_pred CCCC-------CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 4577-------434476689616742110011011033328866778899999999999998608982899977
Q gi|254780666|r 299 FDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 299 ~~~~-------~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
.+.- ....||-+.+||- + .++. ...+++.+++++||.|++-.
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDad---------------K------~nY~----~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663 135 LESLDELLADGESGTFDFAFVDAD---------------K------DNYS----NYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCC---------------H------HHHH----HHHHHHHHHCCCCCEEEEEC
T ss_conf 666999985579984259997366---------------6------7789----99999985621353899922
No 139
>PRK00811 spermidine synthase; Provisional
Probab=96.28 E-value=0.031 Score=36.27 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=79.1
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCC--CHHHHHCCHHHHHHHHHHHHCCC---CCC--EEEEECCCCCCCC--CCCCCEE
Q ss_conf 2133100355644700001025684--10001059679877654432048---874--1772077445774--3447668
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLH---LYA--EDIIEMDAFDYCP--KKLFDAV 310 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~--~i~A~D~~~~Rl~~l~~~~~R~g---~~~--~~~~~~D~~~~~~--~~~fD~i 310 (445)
...++||=+..|-||=.-+++.... +|+-+|+++.=++..++.+.... +.+ ++++..|+..+-. .++||.|
T Consensus 77 ~~pk~VLIiGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~yDvI 156 (283)
T PRK00811 77 PNPKKVLIIGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSFDVI 156 (283)
T ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCEE
T ss_conf 99774899568747999998427885679999468999999999838863133029715998278999998452355489
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 9616742110011011033328866778899999999999998608982899977478
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi 368 (445)
++|.| .|.. +.. . -...+-...+.+.|+|||.+|-=+-|.
T Consensus 157 I~D~t---------DP~g-----pa~--~--Lft~~Fy~~~~~~L~~~Gi~v~Q~~sp 196 (283)
T PRK00811 157 IVDST---------DPVG-----PAE--G--LFTKEFYENCKRALKEGGIFVAQSESP 196 (283)
T ss_pred EEECC---------CCCC-----HHH--H--HCCHHHHHHHHHHCCCCCEEEECCCCH
T ss_conf 98089---------9886-----445--5--345999999998539995899927983
No 140
>PRK05785 hypothetical protein; Provisional
Probab=96.27 E-value=0.0023 Score=44.73 Aligned_cols=74 Identities=27% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECCCCCC
Q ss_conf 2133100355644700001025684100010596798776544320488741772077445774-344766896167421
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCSg 318 (445)
.++.+|||+|+|.|-=+.++ .....|+++|+|+.=++..+... .-+++|+..++. ++.||.|. ++
T Consensus 50 ~~~~~vLDva~GTGd~a~~l-~~~~~v~~~D~s~~ML~~a~~~~--------~~v~~~ae~LPf~d~sFD~vt-----~~ 115 (225)
T PRK05785 50 KSPLKVLDAGAGPGNMAYHL-RKIRYVVALDYTEEMLRLNLVAD--------DKVVGSFEAMPFRDKSFDLVM-----SG 115 (225)
T ss_pred CCCCEEEEECCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHCC--------CCEEEHHHHCCCCCCCEEEEE-----EE
T ss_conf 88882899568843999996-34786999988999999876432--------113731853999988252776-----34
Q ss_pred CCHHHCCCHH
Q ss_conf 1001101103
Q gi|254780666|r 319 TGTIRRHPDV 328 (445)
Q Consensus 319 ~Gt~rr~Pd~ 328 (445)
-| +|.-||.
T Consensus 116 Fg-lRN~~d~ 124 (225)
T PRK05785 116 YA-LHASDDI 124 (225)
T ss_pred EE-EECCCCH
T ss_conf 43-0048889
No 141
>KOG1253 consensus
Probab=96.25 E-value=0.0063 Score=41.47 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=34.0
Q ss_pred CCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCC-----CCCCCCCEEE
Q ss_conf 1331003556447000010---2568410001059679877654432048874-17720774457-----7434476689
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDY-----CPKKLFDAVL 311 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~-----~~~~~fD~iL 311 (445)
++-+|||+-+|-|--++.. ..+-+.|+|+|.+++-++..++|.+..++.+ ++....|+..+ .....||.|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCEEE
T ss_conf 75008987645517888998870424531036787778899986655067322112441027789875645212466672
Q ss_pred ECCC
Q ss_conf 6167
Q gi|254780666|r 312 VDAP 315 (445)
Q Consensus 312 lDaP 315 (445)
||+=
T Consensus 189 LDPy 192 (525)
T KOG1253 189 LDPY 192 (525)
T ss_pred CCCC
T ss_conf 3788
No 142
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.24 E-value=0.0042 Score=42.78 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCEEE
Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207744577434-476689
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVL 311 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~-~fD~iL 311 (445)
++..+++.+++.||+..+|+|.=|.+|++...+|+|+|++..-.+.+++... +..|+++++.|++++.... ...+|.
T Consensus 5 Iv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~--~~~n~~ii~~D~L~~~~~~~~~~~iv 82 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCCCCCCCCCCEEE
T ss_conf 9886389994979996897029999999731635316378899999998641--07977999571112553115873699
Q ss_pred ECCCCCCC
Q ss_conf 61674211
Q gi|254780666|r 312 VDAPCSST 319 (445)
Q Consensus 312 lDaPCSg~ 319 (445)
=.-|-.=|
T Consensus 83 ~NLPY~Is 90 (169)
T smart00650 83 GNLPYNIS 90 (169)
T ss_pred ECCCCCCH
T ss_conf 34763011
No 143
>PRK03612 spermidine synthase; Provisional
Probab=96.19 E-value=0.0067 Score=41.23 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=96.4
Q ss_pred HCHHHHHCCCEE--CCCC---CCC--CCCCCCCCCCCCEECCCCCCCCCEEEECCCCC--CHHHHHCCHHHHHHHHHH--
Q ss_conf 585011001013--4632---123--22235632133100355644700001025684--100010596798776544--
Q gi|254780666|r 214 SLPGFAEGVWWV--QDAS---ASI--PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCN-- 282 (445)
Q Consensus 214 ~~~~f~eG~~~V--QD~a---Sql--~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~--~i~A~D~~~~Rl~~l~~~-- 282 (445)
+...|-+|.... .|+- -++ |+....+. .++||=++.|-|+-.-+++...+ +|+-+|+++.=++..+++
T Consensus 260 ~~rLyLdG~lQ~s~~DE~~YhE~LvHp~m~~~~~-p~~VLiiGGGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~ 338 (516)
T PRK03612 260 DLRLYLNGRLQFSSRDEYRYHEALVHPALAASPR-ARRVLILGGGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPA 338 (516)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCC
T ss_conf 6489988923357864888776340402156999-773899837760879998648996637899518899999985721
Q ss_pred HHCCC---CC--CEEEEECCCCCCC--CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32048---87--4177207744577--43447668961674211001101103332886677889999999999999860
Q gi|254780666|r 283 LDRLH---LY--AEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 (445)
Q Consensus 283 ~~R~g---~~--~~~~~~~D~~~~~--~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~l 355 (445)
+..++ +. -+++++.|++++- ..++||.|++|.| +|+.- ....+ .-++--..+.+.|
T Consensus 339 l~~~n~~a~~DpRv~v~~~Da~~~l~~~~~~yDvIi~D~p---------dP~~~---~~~~L-----Ys~eFY~~~~~~L 401 (516)
T PRK03612 339 LRALNGGALDDPRVTVVNDDAFNWLRKLPETFDAIIVDLP---------DPSNP---ALGKL-----YSVEFYRLLKRRL 401 (516)
T ss_pred HHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECC---------CCCCC---CCCCC-----CCHHHHHHHHHHC
T ss_conf 4444123234996489853789999868887888998189---------97995---22467-----5399999999844
Q ss_pred CCCCEEEE-EECCCCHHHCHHHHHHHHHHC
Q ss_conf 89828999-774788343999899999968
Q gi|254780666|r 356 KPGGIVVF-SNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 356 k~gG~lvY-sTCSi~~eEne~vV~~fL~~~ 384 (445)
+|||.++- ||-..+.-+.=..|.+-++..
T Consensus 402 ~~~G~~v~qs~Sp~~~~~~f~~i~~T~~~~ 431 (516)
T PRK03612 402 APDGLLVVQSTSPYFAPKAFWSIEATLEAA 431 (516)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 999589993689755220346899999983
No 144
>PRK04457 spermidine synthase; Provisional
Probab=96.18 E-value=0.019 Score=37.83 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=91.7
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCCC--CC
Q ss_conf 23222356321331003556447000010--25684100010596798776544320488--74177207744577--43
Q gi|254780666|r 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYC--PK 304 (445)
Q Consensus 231 ql~~~~l~~~~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~--~~~~~~~~D~~~~~--~~ 304 (445)
|+...++.|.| ++||-+.=|.|+=+-.+ .-...+|+++|+++.=++..++-.. +-. ...+++++|+..+- ..
T Consensus 57 Mm~~LLf~p~P-k~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~-lP~dd~Rl~V~~~Dg~~fv~~~~ 134 (262)
T PRK04457 57 MMGFLLFNPRP-QHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFE-LPFEDEKFEIIEADGAEYIKVFP 134 (262)
T ss_pred HHHHHHCCCCC-CEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC-CCCCCCCEEEEECCHHHHHHHCC
T ss_conf 99998658997-86999925701999999983986758999878899999998657-99999726999553899985486
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 44766896167421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
.+||.|++|+- .+.|. |+ . -.+.+-++.+...|++||.||-=+.|-.+. ....++.+-+..
T Consensus 135 ~~~DvI~vD~f-d~~g~----~~--------~-----L~t~~Fy~~c~~~L~~~Gvlv~Nl~~~~~~-~~~~l~~i~~~F 195 (262)
T PRK04457 135 ASTDVILVDGF-DGEQI----VD--------A-----LVTQPFFRDCRNALSSDGVFVTNLWSGDKR-YQRYIERLLSVF 195 (262)
T ss_pred CCCCEEEEECC-CCCCC----CC--------C-----CCCHHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHHHHHHHH
T ss_conf 77788999688-98888----60--------0-----082999999998649893999986889986-599999999972
Q ss_pred CCCEEECC
Q ss_conf 87417813
Q gi|254780666|r 385 PIPVELVP 392 (445)
Q Consensus 385 ~~~~~~~~ 392 (445)
++.+...+
T Consensus 196 ~~~~~~~~ 203 (262)
T PRK04457 196 EGRVLELP 203 (262)
T ss_pred CCEEEEEE
T ss_conf 87399972
No 145
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.17 E-value=0.0039 Score=43.00 Aligned_cols=69 Identities=25% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 13310035564470000102568-4100010596798776544320488741772077445774344766896
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLl 312 (445)
.|.+|||+|||+|-=+..-+..+ ..+++.|+.+.....++-|.+-.|+ ++.++..|... ....||.||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLLLA 148 (218)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCC-EEEEEECCCCC--CCCCEEEEEE
T ss_conf 3653244156667088999985037887627884788885306221562-16774313368--9864038985
No 146
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=95.98 E-value=0.03 Score=36.44 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEE
Q ss_conf 22235632133100355644700001025684-10001059679877654432048874-17720774457743447668
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAV 310 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~i 310 (445)
+...+.+..|.+|||+.||-|==..-++..++ .|+.+|.+..=+-....--+=+|..+ +.+.-.-...+.....||.|
T Consensus 107 l~~~i~~L~gk~VlDVGcgNGYy~~RMlg~ga~~viGiDPs~lf~~QF~ai~~~~~~~~~~~~lPlg~E~lp~~~~FDtV 186 (315)
T pfam08003 107 VLPHLSPLKGRTILDVGCGNGYHMWRMLGEGAALVVGIDPSELFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALEAFDTV 186 (315)
T ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCCCEE
T ss_conf 87342242689887517786499998622399879988981999999999999708987568853676548663421557
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCH
Q ss_conf 9616742110011011033328866778899999999999998608982899977478834399
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne 374 (445)
+ +.|++-+ |++|-+ .|..--+.|+|||.||--|=-+.-+|+.
T Consensus 187 F------sMGVLYH------rrsP~~----------hL~~Lk~~L~~gGeLvLETlvi~gd~~~ 228 (315)
T pfam08003 187 F------SMGVLYH------RRSPLD----------HLLQLKDQLVKGGELVLETLVIEGDENT 228 (315)
T ss_pred E------EEEEEEC------CCCHHH----------HHHHHHHHCCCCCEEEEEEEEECCCCCE
T ss_conf 7------6544432------689899----------9999998528797899998776598872
No 147
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.026 Score=36.86 Aligned_cols=115 Identities=27% Similarity=0.280 Sum_probs=82.5
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCEE
Q ss_conf 5632133100355644700001025--684100010596798776544320488741772077445774----3447668
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAV 310 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~i 310 (445)
+...+|.+||=+.||.|+--.|+.. ..|.|+|+|.|++=++.|-.-+++- .|+-.+-.||+.+.. -+..|.|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHCCCCCEE
T ss_conf 7769998789950367985767776047870899996444699999998747--87400201368837765312454389
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHH-HHHHHHCCCCCEEEEE--ECCCC-HHHCHHHHH
Q ss_conf 96167421100110110333288667788999999999-9999860898289997--74788-343999899
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL-LQGISFVKPGGIVVFS--NCSLD-KQDSEEVVQ 378 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL-~~a~~~lk~gG~lvYs--TCSi~-~eEne~vV~ 378 (445)
..|+- .| -|.+|+ .||-.+||+||.++-+ .-||. ..+-++|-+
T Consensus 150 y~DVA---------Qp----------------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~ 196 (231)
T COG1889 150 YQDVA---------QP----------------NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFK 196 (231)
T ss_pred EEECC---------CC----------------HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHH
T ss_conf 98368---------81----------------0789999889973216973999998512304589899999
No 148
>PHA02056 putative methyltransferase
Probab=95.96 E-value=0.0052 Score=42.04 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=57.7
Q ss_pred CCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 632133100355644700001025--684100010596798776544320488741772077445774344766896167
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445)
+.--..+|+|+|||=|+=|.++.. ..-+|+|++.++.=++.-++-+ .....+++|+.+.....+||.++-.+|
T Consensus 61 Da~~tG~iiDLCAGIG~LSy~~~~r~kp~~ivCVErN~~y~~vGkkil-----PeAtWI~~Dv~~~~~~~~FD~aIsNPP 135 (279)
T PHA02056 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPP 135 (279)
T ss_pred ECCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCC-----CCCEEEECCEECCCCCCCEEEEECCCC
T ss_conf 025785388821461235799985068863589940857988643207-----640277323130356662004533899
Q ss_pred CC
Q ss_conf 42
Q gi|254780666|r 316 CS 317 (445)
Q Consensus 316 CS 317 (445)
--
T Consensus 136 FG 137 (279)
T PHA02056 136 FG 137 (279)
T ss_pred CC
T ss_conf 76
No 149
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=95.93 E-value=0.0061 Score=41.57 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCEEE
Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207744577434-476689
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVL 311 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~-~fD~iL 311 (445)
++..+++.+++.||+..+|+|.=|..|++....++|+|+++.=++.++++.. +..++.+++.|+.++.... .--.|+
T Consensus 22 Iv~~~~~~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~--~~~~~~ii~~D~l~~d~~~~~~~~vv 99 (258)
T pfam00398 22 IVDKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLA--LHPNVEVVHQDFLKFSFPKHEPFLVV 99 (258)
T ss_pred HHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCCCCCCCCCEEEE
T ss_conf 9997089999979997996239999999616947999544779999998644--28977999663010575457861689
Q ss_pred ECCCCCCCCH-HHCCCHHHHCCCHH-HH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
Q ss_conf 6167421100-11011033328866-77-889999999999999860898289997747883
Q gi|254780666|r 312 VDAPCSSTGT-IRRHPDVLWTRDTD-DI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 (445)
Q Consensus 312 lDaPCSg~Gt-~rr~Pd~~w~~~~~-~l-~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~ 370 (445)
=--|-.-|.- +.+ |-.... .+ .-..-+|++.-++ ++.+-|.--|+-.|+.-
T Consensus 100 gNLPY~Iss~il~~-----ll~~~~~~~~~~vlmvQkEvA~R---l~a~pg~k~y~~LSv~~ 153 (258)
T pfam00398 100 GNIPYNITTPIVKK-----LLFEPRFGRVKMLLVVQKEFARR---LLARPGSKIYSRLTVLT 153 (258)
T ss_pred ECCCCCCCHHHHHH-----HHHCCCCCCCEEEEEEEHHHHHH---HHCCCCCCCCCHHHHHH
T ss_conf 44886341789999-----99704767204899988999999---85589986513689999
No 150
>KOG1596 consensus
Probab=95.92 E-value=0.034 Score=36.04 Aligned_cols=120 Identities=24% Similarity=0.238 Sum_probs=87.3
Q ss_pred CCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCCE
Q ss_conf 56321331003556447000010---256841000105967987765443204887417720774457743----44766
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----KLFDA 309 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----~~fD~ 309 (445)
+..+||.+||=+-||-|.--.|. ....|-|+|+|.|.+-=+.|...+++- +||..+..||+.+..- .-.|.
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred EEECCCCEEEEEECCCCCEEEHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCC--CCCEEEEECCCCCHHEEEEEEEEEE
T ss_conf 25358866999633678433300003077743999984355328899876426--8700245047785003566105778
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE---EECCCCHHHCHHHHHHHHH
Q ss_conf 896167421100110110333288667788999999999999986089828999---7747883439998999999
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF---SNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY---sTCSi~~eEne~vV~~fL~ 382 (445)
|+-|+| +|| .. +-+--+|..+||+||-.|- +.|+=....+|.|-+.=.+
T Consensus 230 IFaDva---------qpd---------q~------RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~ 281 (317)
T KOG1596 230 IFADVA---------QPD---------QA------RIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVK 281 (317)
T ss_pred EECCCC---------CCH---------HH------HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 962689---------703---------44------54533466650268718999854654444547888999999
No 151
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=95.91 E-value=0.026 Score=36.87 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=87.9
Q ss_pred CCCEECCCCCCCCCEEEECCCC----CCHHHHHCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCC----CCCCCEEEE
Q ss_conf 3310035564470000102568----4100010596798776544320488741-772077445774----344766896
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVSG----AKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCP----KKLFDAVLV 312 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~~----~~i~A~D~~~~Rl~~l~~~~~R~g~~~~-~~~~~D~~~~~~----~~~fD~iLl 312 (445)
.-+|||..||+|-=-+...+.. -.|...|-|+--++.-++-++..|+.++ ...+.|+.+... ....+.++|
T Consensus 136 ~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l~p~P~l~IV 215 (311)
T pfam12147 136 PVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAALTPAPTLAIV 215 (311)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCCCCCCCEEEE
T ss_conf 56999851686162999998579887458851488877999999999749620006740576797676326999978997
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 1674211001101103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
||+ +.+-+++ .+=++=|.-.+..+.|||+|||..=-.+|+ -+.|...|.+|.
T Consensus 216 ----SGL----------yELF~dN-----~lv~~sl~Gl~~ai~~gGyLIYTgQPWHPQ--Le~IAr~LtSHr 267 (311)
T pfam12147 216 ----SGL----------YELFPDN-----DLVRRSLAGLAQAVEPGGYLIYTGQPWHPQ--LEMIARALTSHR 267 (311)
T ss_pred ----ECH----------HHHCCCH-----HHHHHHHHHHHHHCCCCCEEEECCCCCCHH--HHHHHHHHHCCC
T ss_conf ----012----------6636872-----999999999997508997899829988667--999999972566
No 152
>KOG3420 consensus
Probab=95.91 E-value=0.0052 Score=42.07 Aligned_cols=87 Identities=22% Similarity=0.402 Sum_probs=69.7
Q ss_pred CCCCCCCEECCCCCCCCCEEEE-CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECCC
Q ss_conf 6321331003556447000010-256841000105967987765443204887417720774457743-44766896167
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAP 315 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l-~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-~~fD~iLlDaP 315 (445)
+...|+.++|+|||-|-=+++- |-..-.|+.+|+++..++....|++-..+. +++.+.|-.++.+. ..||..+.|+|
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred CCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHHH-HHEEEEECCCHHCCCCEEEEEEECCC
T ss_conf 12047462252476115677750578733786405889999986166875233-42122221551105876766786689
Q ss_pred CCCCCHHHCCCHH
Q ss_conf 4211001101103
Q gi|254780666|r 316 CSSTGTIRRHPDV 328 (445)
Q Consensus 316 CSg~Gt~rr~Pd~ 328 (445)
-||=.|+-|.
T Consensus 124 ---FGTk~~~aDm 133 (185)
T KOG3420 124 ---FGTKKKGADM 133 (185)
T ss_pred ---CCCCCCCCCH
T ss_conf ---8764344338
No 153
>KOG2361 consensus
Probab=95.86 E-value=0.0081 Score=40.64 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=80.5
Q ss_pred HCHHHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECC----CCCCHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 585011001013463212322235632133100355644700001025----6841000105967987765443204887
Q gi|254780666|r 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 (445)
Q Consensus 214 ~~~~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~----~~~~i~A~D~~~~Rl~~l~~~~~R~g~~ 289 (445)
...-|++-.|..|+...-++..- .+.++||.+.||.|.-+.-|++ ++-.|+|+|-|++.++.++++-...- .
T Consensus 47 ~~rFfkdR~wL~~Efpel~~~~~---~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~ 122 (264)
T KOG2361 47 ENRFFKDRNWLLREFPELLPVDE---KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-S 122 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC---CCHHHHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCH-H
T ss_conf 45453116778775677507555---5734511222477751224442489987389974898689999873633264-5
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 417720774457743447668961674211001101103332886677889999999999999860898289997
Q gi|254780666|r 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 290 ~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
.+...+.|..... +..+||+|+=-+-- ....++. + -.+-+..-+.+..+++||||.|+.-
T Consensus 123 ~~~afv~Dlt~~~--------~~~~~~~~svD~it---~IFvLSA--i--~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361 123 RVEAFVWDLTSPS--------LKEPPEEGSVDIIT---LIFVLSA--I--HPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred HHCCCCEECCCHH--------CCCCCCCCCCCEEE---EEEEEEC--C--CHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5012000165601--------03788867633478---9998751--4--8477899999999974888679984
No 154
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=95.83 E-value=0.024 Score=37.07 Aligned_cols=139 Identities=19% Similarity=0.281 Sum_probs=102.7
Q ss_pred CCC-CCEECCCCCCCCCEEEEC--CC--CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCC---CCCEE
Q ss_conf 213-310035564470000102--56--8410001059679877654432048874-177207744577434---47668
Q gi|254780666|r 240 LNN-LSVLDLCAAPGGKTAQLI--VS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKK---LFDAV 310 (445)
Q Consensus 240 ~~g-~~VLD~CAAPGGKT~~l~--~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~---~fD~i 310 (445)
.+- ..++|+|.|.|.-++.++ .. ...+.++|++...+...++|+++.++.. +.....+........ ++|.+
T Consensus 124 ~~~p~~~~d~~~g~g~~~~~~~~~~~pc~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 203 (311)
T TIGR00536 124 PPLPLHILDLGTGSGCIALALAYEFPPCNAEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGLGGPKLDLL 203 (311)
T ss_pred CCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCEEEE
T ss_conf 77650111014563156665543046666226641122367888887677643201200101124443320366522366
Q ss_pred EECCCCCCCCHHHCC-CHHHHCCCHHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHH
Q ss_conf 961674211001101-103332886677----88999999999999986089828999774788343999899
Q gi|254780666|r 311 LVDAPCSSTGTIRRH-PDVLWTRDTDDI----VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~-Pd~~w~~~~~~l----~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~ 378 (445)
+-.+|--..--.... |.....-....+ ..-...-+.++..+...+.++|.+++..-.....+-.+...
T Consensus 204 ~~~ppy~~~~~~~~~~~~~~~~~p~~~l~~~g~~g~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 276 (311)
T TIGR00536 204 VSNPPYIDEEDLADLSPGVVLFEPLLALVGFGDDGLKILKRILELAPDYLKPGGFLLLEIGNWQLGLLKELLR 276 (311)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 4588654413455531123432003454304740078999998754543056755899616223567787664
No 155
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=95.80 E-value=0.02 Score=37.74 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=85.6
Q ss_pred CCCCEECCCCCCCCCE--EE-ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC---CCCCCCCCEEEECC
Q ss_conf 1331003556447000--01-025684100010596798776544320488741772077445---77434476689616
Q gi|254780666|r 241 NNLSVLDLCAAPGGKT--AQ-LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDA 314 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT--~~-l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~---~~~~~~fD~iLlDa 314 (445)
++.+++|..+|||==. +. |...+-+++=+|.+.+|+.=|++-.+++|+.|+.+++..+.+ .....+||.|..
T Consensus 49 ~~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~~~L~L~N~~i~~~R~E~~g~~~~~~~~D~~~~-- 126 (197)
T TIGR00138 49 TGKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVKKELGLNNVEILNGRVEDLGSKQHEEQFDVITS-- 126 (197)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCCCCCCCEEEE--
T ss_conf 331267734789714565342205764289842774068999999998389982420011255055453335787898--
Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHH
Q ss_conf 74211001101103332886677889999999999999860898289997747883439998
Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 (445)
Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~v 376 (445)
+.-..+ ..+++-+..++++||.++--==.-..+|=+..
T Consensus 127 -----------------RAl~~l-------~~~~e~~~~L~~~~G~~~~~KG~~~~~E~~~~ 164 (197)
T TIGR00138 127 -----------------RALVSL-------NELLELTLPLLKVGGYFLAYKGKYLEDEIEEK 164 (197)
T ss_pred -----------------CCCHHH-------HHHHHHHHHCCCCCCEEEEECCCCHHHHHHCC
T ss_conf -----------------031024-------68888663037889789997086658887605
No 156
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=95.65 E-value=0.088 Score=32.94 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=84.6
Q ss_pred CCCEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCC--CC--CEEEEECCCCCCCC--CCCCCEEEEC
Q ss_conf 3310035564470000102568--410001059679877654432048--87--41772077445774--3447668961
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLH--LY--AEDIIEMDAFDYCP--KKLFDAVLVD 313 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g--~~--~~~~~~~D~~~~~~--~~~fD~iLlD 313 (445)
.++||=+..|-||=.-+++... .+|+.+|+++.=++..++.+..+. +. .++++..|++.+-. .++||.|++|
T Consensus 76 pk~VLIiGGGDG~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvII~D 155 (240)
T pfam01564 76 PKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVIIVD 155 (240)
T ss_pred CCEEEEECCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEE
T ss_conf 55367645865799999856799538999757889999999987985243479855999816899998572544589995
Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 6742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
.| +|.. +. ..-.-.+-.+.+.+.|+|||.+|-=.-|.. .+...+....+.
T Consensus 156 ~~---------DP~~-----~~----~~Lfs~eFy~~~~~~L~~~Gi~v~Q~~sp~--~~~~~~~~i~~~ 205 (240)
T pfam01564 156 ST---------DPVG-----PA----ENLFSKEFYDLLKRALKEDGVFVTQAESPW--LHLELIINILKN 205 (240)
T ss_pred CC---------CCCC-----HH----HHHHHHHHHHHHHHHCCCCCEEEEECCCHH--HCHHHHHHHHHH
T ss_conf 89---------9765-----33----444229999999986599978999248834--379999999999
No 157
>KOG4300 consensus
Probab=95.62 E-value=0.056 Score=34.42 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=76.6
Q ss_pred CCCCCCCCEECCCCCCCCCEEE-ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEE-EEECCCCCCC--CCCCCCEEEE
Q ss_conf 5632133100355644700001-0256841000105967987765443204887417-7207744577--4344766896
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDYC--PKKLFDAVLV 312 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~-l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~-~~~~D~~~~~--~~~~fD~iLl 312 (445)
+.+.-...||.+-+|+|----- =+...-.|+++|.+++=-+.+.+.+....-.++. .+++|+.++. .+.++|.|+.
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300 72 LGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred HCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCEEEEEE
T ss_conf 34357513699614688885355578885689867848799999988864257205777850521074213677115777
Q ss_pred C-CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 1-6742110011011033328866778899999999999998608982899977
Q gi|254780666|r 313 D-APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 313 D-aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
- +=||- +-+.+.|.+..++|+|||+++..-
T Consensus 152 TlvLCSv-----------------------e~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300 152 TLVLCSV-----------------------EDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEECC-----------------------CCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 8887205-----------------------779999999887508895899972
No 158
>PRK10742 putative methyltransferase; Provisional
Probab=95.61 E-value=0.0042 Score=42.73 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCCCC--CEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC---------CCEEEEECCC
Q ss_conf 12322235632133--100355644700001025684100010596798776544320488---------7417720774
Q gi|254780666|r 230 ASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL---------YAEDIIEMDA 298 (445)
Q Consensus 230 Sql~~~~l~~~~g~--~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~---------~~~~~~~~D~ 298 (445)
.|.++.+.+.+.+. +|||+.||=|.-++.|+..+.+|+.+|.|+-=...++.-++|.-. ....++.+|+
T Consensus 75 gq~lakAvG~k~~~~P~VlDATAGLGrDAfvLAslGc~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds 154 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred CCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCH
T ss_conf 62667875667899981898788746889999817986999978899999999999998738155899996167865868
Q ss_pred CCCCC--CCCCCEEEECCC
Q ss_conf 45774--344766896167
Q gi|254780666|r 299 FDYCP--KKLFDAVLVDAP 315 (445)
Q Consensus 299 ~~~~~--~~~fD~iLlDaP 315 (445)
.++.. ...+|.|.+|+=
T Consensus 155 ~~~L~~~~~~~DVIYLDPM 173 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPM 173 (250)
T ss_pred HHHHHHCCCCCCEEEECCC
T ss_conf 9999735889888997366
No 159
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=95.60 E-value=0.0089 Score=40.32 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=103.7
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------C
Q ss_conf 2235632133100355644700001025---68410001059679877654432048874177207744577-------4
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------P 303 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-------~ 303 (445)
++-|.++|+..-||.-.|-||=|-+|++ -.|+++++|.++.-+...++.++-..-.-+.++......+. .
T Consensus 20 v~~L~ik~~G~YiD~T~G~GGHS~~iL~ql~~~g~L~~iD~D~~ai~~A~~~l~~~~~~~~~~~~~~F~~~~~~~~~~~~ 99 (323)
T TIGR00006 20 VEGLNIKPDGIYIDCTLGRGGHSKAILEQLSEKGRLIGIDRDKQAIAFAKELLKDFEGRRVVLIHDNFANFFEYLKELDL 99 (323)
T ss_pred HHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCC
T ss_conf 72765488873654025851789999852399950788747989999999985321067578850760342003211588
Q ss_pred CCCCCEEEECCCCCCC--------------CHH--HCCCH-HH-------HCCCHHHHHH--------------------
Q ss_conf 3447668961674211--------------001--10110-33-------3288667788--------------------
Q gi|254780666|r 304 KKLFDAVLVDAPCSST--------------GTI--RRHPD-VL-------WTRDTDDIVK-------------------- 339 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~--------------Gt~--rr~Pd-~~-------w~~~~~~l~~-------------------- 339 (445)
-.+||.||+|==-|+- |.+ |=++. .. =+.+.+||..
T Consensus 100 ~~k~dGIL~DLGVSS~QLD~~~RGFSF~~d~PLDMRMD~s~~~~sA~e~~~~~~~~dL~~il~~yGEe~~~KrIA~~I~e 179 (323)
T TIGR00006 100 VTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSSQKLSAAEVLNTYSEEDLERILKKYGEEKFSKRIARAIVE 179 (323)
T ss_pred EEEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 15774588615776031187888826467879665456555657789998400089999999872520243067899999
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf -----------------------------------------------999999999999986089828999774788343
Q gi|254780666|r 340 -----------------------------------------------SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 (445)
Q Consensus 340 -----------------------------------------------l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE 372 (445)
|..| .+.|..|..+|++||+| +.=|+|--|
T Consensus 180 ~~~~~p~~tT~~Lae~i~~a~p~f~K~k~~hPAtrvFQAiRI~vNdEL~~L-e~~L~~~~~~L~~~Grl--~vIsFHSLE 256 (323)
T TIGR00006 180 ARKKKPIQTTKELAELISKAVPGFSKHKSIHPATRVFQAIRIYVNDELEEL-EEALQQAPNLLKPGGRL--SVISFHSLE 256 (323)
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEE--EEEEHHHHH
T ss_conf 984278875778999999744761004788851255535677888789999-99999999841789718--987400056
Q ss_pred CHHHHHHHHHHCCCCEE
Q ss_conf 99989999996887417
Q gi|254780666|r 373 SEEVVQKVLRSSPIPVE 389 (445)
Q Consensus 373 ne~vV~~fL~~~~~~~~ 389 (445)
+..|+.|+++......
T Consensus 257 -DriVK~~f~~~s~~~~ 272 (323)
T TIGR00006 257 -DRIVKNFFKELSKFPQ 272 (323)
T ss_pred -HHHHHHHHHHHCCCCC
T ss_conf -7999999986147667
No 160
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=95.56 E-value=0.081 Score=33.20 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=81.3
Q ss_pred CCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC-CCCCCEEEECCCCCCCCHH
Q ss_conf 35564470000102568--410001059679877654432048874-1772077445774-3447668961674211001
Q gi|254780666|r 247 DLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTI 322 (445)
Q Consensus 247 D~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~Gt~ 322 (445)
|.++==|==...|..++ .+++|+|+++.=++..++|+.+.|+.+ +++..+|++..-. .+..|.|.+ .|.|-
T Consensus 3 DIGtDHayLpi~L~~~g~~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~~l~~~e~vd~ivI----AGMGG- 77 (204)
T pfam04816 3 DIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAVIEELDLIDVIVI----AGMGG- 77 (204)
T ss_pred EECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCCEEEE----ECCCH-
T ss_conf 1054508999999977998779996166749999999999759975389997784220586776577999----48689-
Q ss_pred HCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE
Q ss_conf 10110333288667788999999999999986089828999774788343999899999968874178
Q gi|254780666|r 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 (445)
Q Consensus 323 rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~ 390 (445)
.+-.+||++....++...+|| +.|.-+...++++|.+|...+..
T Consensus 78 -------------------~lI~~IL~~~~~~~~~~~~lI-----LQP~~~~~~lR~~L~~~g~~I~~ 121 (204)
T pfam04816 78 -------------------TLIADILEQGKNKLAGVKRLI-----LQPNINEEELREWLSQNSWQIKA 121 (204)
T ss_pred -------------------HHHHHHHHHCHHHHCCCCEEE-----EECCCCHHHHHHHHHHCCCEEEE
T ss_conf -------------------999999981845535757799-----95797859999999988997888
No 161
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=95.43 E-value=0.0057 Score=41.75 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=90.3
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 21331003556447000010256841000105967987765443204887417720774457743447668961674211
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445)
-...++||+.||-|--|+-|..+|..|.|+|.++.-+.-+.+-.+|=.+.|+.+...|.-.....+.||-|+-=+
T Consensus 72 v~PcKtLDLGCGqGrNsLyLsl~GYDV~awD~n~~siA~v~~~k~~EnL~nl~t~~yDiNaa~~~e~YDFI~sTV----- 146 (239)
T TIGR00477 72 VKPCKTLDLGCGQGRNSLYLSLAGYDVDAWDHNEASIASVEEIKEKENLDNLRTDVYDINAAALDEDYDFILSTV----- 146 (239)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEH-----
T ss_conf 379865326888853789997616841012168668875998887626711004655433554012787421020-----
Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEE---E----C----CCCHHHCHHH
Q ss_conf 00110110333288667788999999999999986089828-9997---7----4----7883439998
Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-VVFS---N----C----SLDKQDSEEV 376 (445)
Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~-lvYs---T----C----Si~~eEne~v 376 (445)
+..-+..+.+. +|+.+--..-+|||+ ||=| | | |+.=.|||--
T Consensus 147 --------Vf~FL~a~rvP-------~iIanMq~hT~pGGYNLIVaAMdTaDyPC~~pFsFtFkE~ELr 200 (239)
T TIGR00477 147 --------VFMFLEAERVP-------EIIANMQEHTKPGGYNLIVAAMDTADYPCTLPFSFTFKEDELR 200 (239)
T ss_pred --------HHHHHCCCCCH-------HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH
T ss_conf --------12210588772-------6788658746798732223321578888885387344106788
No 162
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=95.43 E-value=0.021 Score=37.54 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=49.0
Q ss_pred CCCCEECCCCCCCCCEEEECC-----CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEE-EC
Q ss_conf 133100355644700001025-----684100010596798776544320488741772077445774-34476689-61
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIV-----SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL-VD 313 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~-----~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iL-lD 313 (445)
...+|||+.||-|-=+.+|++ ++..++.+|+|+.-++..-+ .. .++...++|...+.. +..+|.|| |.
T Consensus 85 ~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak----~~-~~~~~~Va~~~~lP~~d~s~D~vl~vF 159 (272)
T PRK11088 85 KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAK----RY-PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHC----CC-CCCEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf 7864888158777899999997411578737998117999999962----68-885499961001888766540899984
Q ss_pred CC
Q ss_conf 67
Q gi|254780666|r 314 AP 315 (445)
Q Consensus 314 aP 315 (445)
+|
T Consensus 160 sP 161 (272)
T PRK11088 160 AP 161 (272)
T ss_pred CC
T ss_conf 37
No 163
>PRK06202 hypothetical protein; Provisional
Probab=95.23 E-value=0.026 Score=36.86 Aligned_cols=70 Identities=27% Similarity=0.248 Sum_probs=54.0
Q ss_pred CCCCCEECCCCCCCCCEEEECC---C---CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEE
Q ss_conf 2133100355644700001025---6---8410001059679877654432048874177207744577434476689
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIV---S---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL 311 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~---~---~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iL 311 (445)
...-+|||+.||.|.=+..|+. . ..+|+++|+++.-++..+++.+..|+. +.....|.... ..+.||.|+
T Consensus 60 ~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~-~~~~~~d~l~~-~~~~~DvV~ 135 (233)
T PRK06202 60 DRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVT-FRFAVSDELVA-EGERFDVVY 135 (233)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCC-EEEEEHHHHCC-CCCCCCEEE
T ss_conf 88728998347875799999999975599638999779889999998734036983-69973432024-578875760
No 164
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.15 E-value=0.012 Score=39.50 Aligned_cols=146 Identities=16% Similarity=0.243 Sum_probs=81.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCC---CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------CC
Q ss_conf 22356321331003556447000010256---8410001059679877654432048874177207744577------43
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PK 304 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~---~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------~~ 304 (445)
+..|.+.|+...+|..-|.||-|-.+++. .|+++++|.++.-+...++.+...+ ..+.+++....++. ..
T Consensus 16 i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i 94 (314)
T COG0275 16 VELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGI 94 (314)
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHCCC
T ss_conf 985264899479982377747689999858988708997689899999999853037-8489995768789988876388
Q ss_pred CCCCEEEECCCCCCCCH----------------HHCCCHHH-------HCCCHHHHH-----------------------
Q ss_conf 44766896167421100----------------11011033-------328866778-----------------------
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGT----------------IRRHPDVL-------WTRDTDDIV----------------------- 338 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt----------------~rr~Pd~~-------w~~~~~~l~----------------------- 338 (445)
.++|.||+|-=-|+.-- +|=+|+.. =+.++++|.
T Consensus 95 ~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr~arrIA~aIv~~R 174 (314)
T COG0275 95 GKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAKRIARAIVERR 174 (314)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 72227999536783202887678602788986567488889789999855999999999998451766899999999986
Q ss_pred --------------------------------------------HHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCHHHC
Q ss_conf --------------------------------------------899999999999998608982899977-47883439
Q gi|254780666|r 339 --------------------------------------------KSACFQRKLLLQGISFVKPGGIVVFSN-CSLDKQDS 373 (445)
Q Consensus 339 --------------------------------------------~l~~~Q~~iL~~a~~~lk~gG~lvYsT-CSi~~eEn 373 (445)
+|..+ .+.|.+|..+|+|||+|+-.| ||+.
T Consensus 175 ~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L-~~~L~~a~~~L~~~GRl~VIsFHSLE---- 249 (314)
T COG0275 175 KKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEEL-EEALEAALDLLKPGGRLAVISFHSLE---- 249 (314)
T ss_pred CCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHEEEEHHHHHHH-HHHHHHHHHHHCCCCEEEEEEECCHH----
T ss_conf 2698766999999999867701113678950665634100005679999-99999999961889679999953428----
Q ss_pred HHHHHHHHHHCC
Q ss_conf 998999999688
Q gi|254780666|r 374 EEVVQKVLRSSP 385 (445)
Q Consensus 374 e~vV~~fL~~~~ 385 (445)
...|++|.+++.
T Consensus 250 DRiVK~ff~~~s 261 (314)
T COG0275 250 DRIVKNFFKELS 261 (314)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999840
No 165
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.11 E-value=0.013 Score=39.09 Aligned_cols=77 Identities=26% Similarity=0.303 Sum_probs=58.0
Q ss_pred CCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---CCCCCEEEECCCCCC
Q ss_conf 31003556447000010256841-00010596798776544320488741772077445774---344766896167421
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---~~~fD~iLlDaPCSg 318 (445)
.+|+|++||.||=+.-+.+.+.+ +.|+|+++...+..+.|..- .+.+.|.+++.. ...+|.|+--+||.+
T Consensus 1 l~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~------~~~~~Di~~~~~~~~~~~vDll~ggpPCQ~ 74 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred CCEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCCHHHCCCCCCCCCCCEEEECCCCCC
T ss_conf 95999767807899999986998999996899999999988799------952588644653213788788986899987
Q ss_pred CCHHHCC
Q ss_conf 1001101
Q gi|254780666|r 319 TGTIRRH 325 (445)
Q Consensus 319 ~Gt~rr~ 325 (445)
-=..+++
T Consensus 75 fS~ag~~ 81 (275)
T cd00315 75 FSIAGKR 81 (275)
T ss_pred CCCCCCC
T ss_conf 3547863
No 166
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=95.08 E-value=0.017 Score=38.17 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=38.9
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCEE
Q ss_conf 235632133100355644700001025684100010596798776544320488-7417720774457743447668
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDAV 310 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~~~~fD~i 310 (445)
...+..+++.||....|+|.=|-+|++...+|+|+|++..=+..+++++.-.+. .+++++++|+.+... ..||.|
T Consensus 32 ~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d~-~~~~~v 107 (296)
T PTZ00338 32 EKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTEF-PYFDVC 107 (296)
T ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCCC-CCCCEE
T ss_conf 9607898995799668542999999835891799994889999999998514456673577050531856-411446
No 167
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=95.06 E-value=0.011 Score=39.54 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=48.1
Q ss_pred CCCCCCEECCCCCCCCCEEEECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC---CCCCCCCCCEEEE
Q ss_conf 32133100355644700001025-68410001059679877654432048874177207744---5774344766896
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---DYCPKKLFDAVLV 312 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~---~~~~~~~fD~iLl 312 (445)
..||++|||+.||.|.=..+|.+ .+..++.+|+++..+....++ | +.+++.|.. ...+++.||.|++
T Consensus 11 I~~~srVLDlGCG~G~ll~~L~~~k~v~~~GvEid~~~v~~a~~k----g---~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 11 IPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAK----G---LSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHC----C---CCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 589698998368898999999876698769833899999999864----7---9545077445974577678037869
No 168
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=94.96 E-value=0.0075 Score=40.90 Aligned_cols=102 Identities=19% Similarity=0.324 Sum_probs=80.6
Q ss_pred CCCCCEECCCCCCCCCEEEEC-------CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--C-CCCCE
Q ss_conf 213310035564470000102-------5684100010596798776544320488741772077445774--3-44766
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--K-KLFDA 309 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~-------~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~-~~fD~ 309 (445)
.+-...||+-||=||=.+|=+ ...-.+|.+||++.-+-..+.-++.+|++++....-|+..+.. . ...|.
T Consensus 236 ~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~~PeL 315 (386)
T TIGR02085 236 LPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAESVPEL 315 (386)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 57110320104654127899898764158970443134377899999999987353321045445799998623688965
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 8961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
|||.+|==|.|- + |..-.+.+.|. +++||-|-
T Consensus 316 VlVNPPRRGiG~-----------------e--------L~~~L~~~aP~-fILYSSCN 347 (386)
T TIGR02085 316 VLVNPPRRGIGK-----------------E--------LCDYLSQLAPK-FILYSSCN 347 (386)
T ss_pred EEECCCCCCCCH-----------------H--------HHHHHHHCCCC-EEEECCCC
T ss_conf 776788888760-----------------6--------89999750886-26621677
No 169
>KOG4589 consensus
Probab=94.93 E-value=0.29 Score=29.16 Aligned_cols=120 Identities=28% Similarity=0.340 Sum_probs=78.0
Q ss_pred CCCCCEECCCCCCCCCE---EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCC---------CCCC
Q ss_conf 21331003556447000---0102568410001059679877654432048874177207-744577---------4344
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DAFDYC---------PKKL 306 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT---~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D~~~~~---------~~~~ 306 (445)
.|+.+|||+.||||.=| -|..++.|.|..+|+-. + .-.+.+.++.. |.+++. +.-+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEE---------C--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 8887799816788718999988628874288874331---------1--4888764014324688889999998679983
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 766896167421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
.|.||-|--=-.||+=-| |-..+.+|=.+.|.-|..++.|+|..| |-+-.-+-+.-.++-|.++
T Consensus 137 VdvVlSDMapnaTGvr~~-----------Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589 137 VDVVLSDMAPNATGVRIR-----------DHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEALLQRRLQAV 200 (232)
T ss_pred CCEEEECCCCCCCCCCHH-----------HHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEECCCCHHHHHHHHHHH
T ss_conf 218871357787675124-----------378999999999988632147785799---9970497328999999998
No 170
>PRK01581 speE spermidine synthase; Validated
Probab=94.88 E-value=0.088 Score=32.97 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=77.7
Q ss_pred CCCEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHH--HHCCC---CCC--EEEEECCCCCCCC--CCCCCEE
Q ss_conf 3310035564470000102568--4100010596798776544--32048---874--1772077445774--3447668
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCN--LDRLH---LYA--EDIIEMDAFDYCP--KKLFDAV 310 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~--~~R~g---~~~--~~~~~~D~~~~~~--~~~fD~i 310 (445)
..+||=+..|-|.-.-+++.-. -.|+-+|+++.=++..+.+ +.+++ +.+ +.+++.||..|-. ...||.|
T Consensus 140 ~~rVLILGGGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FDvI 219 (363)
T PRK01581 140 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYDVI 219 (363)
T ss_pred CCEEEEEECCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEE
T ss_conf 77389980764399999871798562789956999999875197998751200149804999210899986167544289
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEECCCCHHHCHHHHHHHHHHC
Q ss_conf 9616742110011011033328866778899999999999998608982899-9774788343999899999968
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-YsTCSi~~eEne~vV~~fL~~~ 384 (445)
++|-| +|+ ..++.+|-. .+.-......|+++|.+| =||--.+.-.-=.-|.+-++..
T Consensus 220 IVDlP---------DP~------n~~L~KLYS--~eFY~Ll~~~La~dG~~vVQSTSPyfApkaFWsI~~Tl~aA 277 (363)
T PRK01581 220 IIDFP---------DPA------TELLSTLYT--SELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHA 277 (363)
T ss_pred EEECC---------CCC------CHHHHHHHH--HHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHHHHC
T ss_conf 99589---------998------624666735--99999999861988539996079765762336777779873
No 171
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.87 E-value=0.027 Score=36.75 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=82.9
Q ss_pred CCCEECCCCCCCCCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-CCEEEECCCCCC
Q ss_conf 3310035564470000--1025684100010596798776544320488741772077445774344-766896167421
Q gi|254780666|r 242 NLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSS 318 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~-fD~iLlDaPCSg 318 (445)
+.+|+|..+|+|==.. .|+..+..++-+|...+|+.=+++-.+.+|+.|+.+++..+.++..... ||.|..=|=+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCCEEEEEEEC--
T ss_conf 887998579999731768885668818997167507999999999859997498631276601446657589854202--
Q ss_pred CCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 10011011033328866778899999999999998608982899977478834399989999
Q gi|254780666|r 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 319 ~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445)
.+. .+.+=+.+++|+||.++-..=+-..+|=++.-...
T Consensus 146 -----------------~L~-------~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~ 183 (215)
T COG0357 146 -----------------SLN-------VLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAI 183 (215)
T ss_pred -----------------CHH-------HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -----------------568-------89999998434688320265876555689999998
No 172
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.012 Score=39.34 Aligned_cols=73 Identities=26% Similarity=0.315 Sum_probs=36.5
Q ss_pred CCCEECCCCCCCCCEEEECC-CCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEECC
Q ss_conf 33100355644700001025-684-100010596798776544320488741772077445774--34476689616
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV-SGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDA 314 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~-~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlDa 314 (445)
..+|+|+-+|-|--..-.+. ... +++++|+|+.-.+.+++|+++....+..+++.|+-.+-. ...||.|=+|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCEEECCC
T ss_conf 73886435553366754534257617997158989999999999834766632553428999872588763781389
No 173
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=94.66 E-value=0.34 Score=28.63 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=61.1
Q ss_pred HHCCCCCCEEEEECCCCCCCC-----CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 320488741772077445774-----344766896167421100110110333288667788999999999999986089
Q gi|254780666|r 283 LDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 (445)
Q Consensus 283 ~~R~g~~~~~~~~~D~~~~~~-----~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~ 357 (445)
+++.|+. .+...|++++.. ..+||+|+--=|++|-|. +.....+....+|=...+.+|..++++
T Consensus 49 L~~~g~~--V~~gVDAt~l~~~~~~~~~~fD~IiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~sa~~~l~~ 117 (166)
T pfam10354 49 LEELGVT--VLHGVDATKLKKHFSLKKNRFDRIIFNFPHAGGKI---------KDSDRNIRLNRELLRGFFKNASELLKP 117 (166)
T ss_pred HHHCCCE--EEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9858995--99857445366684434783578998799888877---------412555899999999999999998279
Q ss_pred CCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 828999774788343999899999968
Q gi|254780666|r 358 GGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 358 gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
+|.+.-+-|.-.|- |..+|+..-++.
T Consensus 118 ~G~i~vTl~~g~py-~~W~i~~lA~~~ 143 (166)
T pfam10354 118 GGEIHVTLKDGEPY-NSWNIEALAAEA 143 (166)
T ss_pred CCEEEEEECCCCCC-CEECHHHHHHHC
T ss_conf 98999995389998-730388999747
No 174
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.63 E-value=0.14 Score=31.36 Aligned_cols=126 Identities=19% Similarity=0.182 Sum_probs=85.6
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCC--C--CCEEEEECCCCC
Q ss_conf 632123222356321331003556447000010256--8410001059679877654432048--8--741772077445
Q gi|254780666|r 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH--L--YAEDIIEMDAFD 300 (445)
Q Consensus 227 D~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g--~--~~~~~~~~D~~~ 300 (445)
.+--..++.+..|.| .+||=..-|.||=+=.++.- --+++.+|+++.=++..++.+.-.. . +-++++..|+.+
T Consensus 63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~ 141 (282)
T COG0421 63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE 141 (282)
T ss_pred HHHHHHCHHHHCCCC-CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHH
T ss_conf 999870306437997-7699988976699999983688433799970889999999866675433579736899610799
Q ss_pred CCC--CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 774--34476689616742110011011033328866778899999999999998608982899977478834
Q gi|254780666|r 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445)
Q Consensus 301 ~~~--~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445)
+-. .++||.|++|.- +|+. -. +. -.+.+-.+.+.+.|+++|.+|.=+=|.+-.
T Consensus 142 ~v~~~~~~fDvIi~D~t---------dp~g---p~-~~-----Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 142 FLRDCEEKFDVIIVDST---------DPVG---PA-EA-----LFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred HHHHCCCCCCEEEECCC---------CCCC---CC-CC-----CCCHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 98748876778998588---------9988---43-02-----377999999998628896899944784324
No 175
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=94.60 E-value=0.022 Score=37.45 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=39.8
Q ss_pred CEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CCCCEEEECCCCCCCC
Q ss_conf 1003556447000010256841-000105967987765443204887417720774457743--4476689616742110
Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTG 320 (445)
Q Consensus 244 ~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--~~fD~iLlDaPCSg~G 320 (445)
+|+|++||.||=|+-+-..+.+ +.|+|+++..++..+.|-... ...|.++.... ..+|.|.--+||-|-=
T Consensus 2 ~vidlF~G~GG~s~G~~~aG~~~~~a~e~d~~a~~ty~~N~~~~-------~~~Di~~~~~~~~~~~Dvl~ggpPCQ~fS 74 (319)
T pfam00145 2 KFIDLFAGIGGFRLGLEQAGFECVAANEIDKSAAKTYEANFPKV-------PIGDITLIDIKDIPDIDILTGGFPCQDFS 74 (319)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCC-------CCCCCCCCCHHHCCCCCEEEECCCCCCCC
T ss_conf 58997807078999999879929999838999999999877999-------61775408874788868898689998724
Q ss_pred HHHC
Q ss_conf 0110
Q gi|254780666|r 321 TIRR 324 (445)
Q Consensus 321 t~rr 324 (445)
+.++
T Consensus 75 ~ag~ 78 (319)
T pfam00145 75 IAGK 78 (319)
T ss_pred CCCC
T ss_conf 0155
No 176
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=94.56 E-value=0.13 Score=31.67 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=68.1
Q ss_pred CCCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCC--CCEEEEECCC-----CCCCCCCCCCEE
Q ss_conf 213310035564470000102--5684100010596798776544320488--7417720774-----457743447668
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDA-----FDYCPKKLFDAV 310 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~--~~~~~~~~D~-----~~~~~~~~fD~i 310 (445)
..|.+||++-||.|-=++.++ .....|+..|. +.=+..++.|++..+. .++.+...|= ......++||.|
T Consensus 43 ~~~k~VLELGaG~GL~Gi~~a~~~~~~~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~I 121 (171)
T pfam10294 43 LSGKNVLELGSGCGLVGIAVALLLPGASVTITDL-EEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDLI 121 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEE
T ss_conf 0687678705665758999998579858996383-789999999999705789966999811089884333146776789
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 9616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
|. -|+-| .+ .....++.....+++|+|.++++. ..-. +.. +.|++.
T Consensus 122 l~-------------sD~iY--~~-------~~~~~L~~ti~~ll~~~g~~lla~-~~R~---~~~-~~F~~~ 167 (171)
T pfam10294 122 LA-------------ADCVY--NE-------DAFPLLVKTLKDLLGKETVILVAY-KKRR---EAE-KRFFKL 167 (171)
T ss_pred EE-------------ECEEE--CH-------HHHHHHHHHHHHHHCCCCEEEEEE-CCCC---HHH-HHHHHH
T ss_conf 97-------------12133--57-------779999999999958998999997-8206---779-999999
No 177
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.48 E-value=0.042 Score=35.33 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=55.2
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECC
Q ss_conf 2133100355644700001025684100010596798776544320488741772077445774-34476689616
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDa 314 (445)
.||+.-.|+.|+|||=|.||.+.+-.|+|+|--. |..++--.|. |.-...|+..+.| ....|-..+|-
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-----ma~sL~dtg~--v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-----MAQSLMDTGQ--VTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred CCCCEEEECCCCCCCCCHHHHHCCEEEEEECCCH-----HHHHHHCCCC--EEEEECCCCCCCCCCCCCCEEEEEH
T ss_conf 6786564226689862254231560899943622-----2265632665--2444134730366788775687520
No 178
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=94.38 E-value=0.17 Score=30.75 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=76.2
Q ss_pred CCCCCEECCCCCCCCCEEE------ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-------CC
Q ss_conf 2133100355644700001------0256841000105967987765443204887417720774457743-------44
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQ------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-------KL 306 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~------l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-------~~ 306 (445)
.+.+.|+....|-||=++- ++...++|+++|+.-+...+-. ..-+.+..+++|..+...- ..
T Consensus 31 ~kPd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~~~-----i~~~~I~lieg~s~d~~~~~~v~~~~~~ 105 (202)
T pfam04989 31 LKPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNRPA-----IEAPRITFIQGSSTDPEIIEQVRSLAEP 105 (202)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-----HCCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 59998999616766289999999997389987999957644335435-----3168769997685678899889998537
Q ss_pred CC--EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCC-CHHH----------
Q ss_conf 76--6896167421100110110333288667788999999999999986089828999-77478-8343----------
Q gi|254780666|r 307 FD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF-SNCSL-DKQD---------- 372 (445)
Q Consensus 307 fD--~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY-sTCSi-~~eE---------- 372 (445)
.+ .|++|+.+|-..|+ +.|+.-+++|++|.++|= =|+-= +|+.
T Consensus 106 ~~~vlVilDs~Ht~~hVl-----------------------~eL~~y~~lv~~GsY~IVeDTii~~~p~~~~~~r~w~~g 162 (202)
T pfam04989 106 PHPVLVILDSDHTHEHVL-----------------------AELRAYAPLVSEGSYLVVEDTIIEDLPESPFPDRPWGKG 162 (202)
T ss_pred CCCEEEEECCCCCHHHHH-----------------------HHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCCC
T ss_conf 985899964886568899-----------------------999987521576889999576243175566788868789
Q ss_pred -C-HHHHHHHHHHCCCCEEE
Q ss_conf -9-99899999968874178
Q gi|254780666|r 373 -S-EEVVQKVLRSSPIPVEL 390 (445)
Q Consensus 373 -n-e~vV~~fL~~~~~~~~~ 390 (445)
| -.-|+.||++|++ |+.
T Consensus 163 nnP~~Av~eFL~~~~~-F~i 181 (202)
T pfam04989 163 NNPKTAVTEFLAEHPE-FEI 181 (202)
T ss_pred CCHHHHHHHHHHHCCC-CEE
T ss_conf 8979999999987899-386
No 179
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=94.03 E-value=0.022 Score=37.43 Aligned_cols=82 Identities=24% Similarity=0.203 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----CCC
Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207744577434----476
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFD 308 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~----~fD 308 (445)
++..++..+++.||....|+|.=|-.|++....++|+|+++.=++.+++. .++.+++.|++++.... ..-
T Consensus 31 Iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~------~~~~ii~~D~L~~~~~~~~~~~~~ 104 (267)
T PRK00274 31 IVRAADLQPGDRVLEIGPGLGALTEPLLERAAKVTAIEIDRDLAPILRET------DNLTIIEGDALKVDLEELAEGQPL 104 (267)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHC------CCEEEEECHHHHCCHHHHCCCCCE
T ss_conf 99960899999079963888889999996268058863688999998504------786999650664786774567872
Q ss_pred EEEECCCCCCCC
Q ss_conf 689616742110
Q gi|254780666|r 309 AVLVDAPCSSTG 320 (445)
Q Consensus 309 ~iLlDaPCSg~G 320 (445)
.|+=--|-.=|.
T Consensus 105 ~vvgNLPY~Iss 116 (267)
T PRK00274 105 KVVANLPYNIST 116 (267)
T ss_pred EEEECCCCHHHH
T ss_conf 799558830312
No 180
>KOG2899 consensus
Probab=93.97 E-value=0.063 Score=34.03 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=83.3
Q ss_pred CCCCEECCCCCCCCCEEEECCCCC--CHHHHHCCHHHHHHHHHHHHCCCCCC----------------------------
Q ss_conf 133100355644700001025684--10001059679877654432048874----------------------------
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYA---------------------------- 290 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~~--~i~A~D~~~~Rl~~l~~~~~R~g~~~---------------------------- 290 (445)
.+..+||..|-.|-=|.+|++.-| .|+.+||++..+++.+++++-.--..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76205750677546589999860643346761568999999973566010103345787543354445410124466510
Q ss_pred --------------EEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHC-CCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf --------------17720774457743447668961674211001101103332-886677889999999999999860
Q gi|254780666|r 291 --------------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFV 355 (445)
Q Consensus 291 --------------~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~-~~~~~l~~l~~~Q~~iL~~a~~~l 355 (445)
......|.. .....+||.||+ =+. .+|- ++-.| +==+.++.+.++++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlc----LSi--------TkWIHLNwgD-----~GL~~ff~kis~ll 199 (288)
T KOG2899 138 TTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILC----LSI--------TKWIHLNWGD-----DGLRRFFRKISSLL 199 (288)
T ss_pred CCCCCCCHHCCCCCEEEECCHHH-HHCCCCCCEEEE----EEE--------EEEEECCCCC-----HHHHHHHHHHHHHH
T ss_conf 03677201013233798600455-505654227999----773--------3467645645-----78999999999860
Q ss_pred CCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 8982899977478834399989999996887417813763233
Q gi|254780666|r 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 (445)
Q Consensus 356 k~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~~~ 398 (445)
.|||+||---=-.---++-.-.-.-+..+.....+.|.....+
T Consensus 200 ~pgGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~ 242 (288)
T KOG2899 200 HPGGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDW 242 (288)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCHHHHHHH
T ss_conf 8685799758861779999999998605840103288898765
No 181
>KOG1541 consensus
Probab=93.79 E-value=0.41 Score=27.98 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=85.8
Q ss_pred CCEECCCCCCCCCCCCCCCC--CCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECC-C
Q ss_conf 10134632123222356321--33100355644700001025684100010596798776544320488741772077-4
Q gi|254780666|r 222 VWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-A 298 (445)
Q Consensus 222 ~~~VQD~aSql~~~~l~~~~--g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D-~ 298 (445)
...||-+=+.-+.++|+... +.-|||..||-|--+..|-+.+-..+.+|||+.=|+...+ ..+- -.++..| +
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~DMG 103 (270)
T KOG1541 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE--RELE---GDLILCDMG 103 (270)
T ss_pred EEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHEECCCCCEEEEECCCHHHHHHHHH--HHHH---CCEEEEECC
T ss_conf 43221778887898760899887179983457774320021689558862289899999997--6640---476631247
Q ss_pred CCC-CCCCCCCEEEE-CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHH---HHHHHHCCCCCEEEEEECCCCHHHC
Q ss_conf 457-74344766896-167421100110110333288667788999999999---9999860898289997747883439
Q gi|254780666|r 299 FDY-CPKKLFDAVLV-DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL---LQGISFVKPGGIVVFSNCSLDKQDS 373 (445)
Q Consensus 299 ~~~-~~~~~fD~iLl-DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL---~~a~~~lk~gG~lvYsTCSi~~eEn 373 (445)
.-+ ...+.||.++- -| +-|-.+.. ..+..-++.|+ ..-...+++|++-|.- +..||
T Consensus 104 ~GlpfrpGtFDg~ISISA-------------vQWLcnA~--~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q----fYpen 164 (270)
T KOG1541 104 EGLPFRPGTFDGVISISA-------------VQWLCNAD--KSLHVPKKRLLRFFGTLYSCLKRGARAVLQ----FYPEN 164 (270)
T ss_pred CCCCCCCCCCCEEEEEEE-------------EEEECCCC--CCCCCHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCC
T ss_conf 887889974124788620-------------32101468--444673899999866453210368615888----52454
Q ss_pred HHHHHHHHHH
Q ss_conf 9989999996
Q gi|254780666|r 374 EEVVQKVLRS 383 (445)
Q Consensus 374 e~vV~~fL~~ 383 (445)
++|++.++..
T Consensus 165 ~~q~d~i~~~ 174 (270)
T KOG1541 165 EAQIDMIMQQ 174 (270)
T ss_pred HHHHHHHHHH
T ss_conf 6799999999
No 182
>KOG1975 consensus
Probab=93.75 E-value=0.057 Score=34.36 Aligned_cols=129 Identities=21% Similarity=0.266 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCEEEE-CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 123222356321331003556447000010-2568410001059679877654432048874177207744577434476
Q gi|254780666|r 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308 (445)
Q Consensus 230 Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l-~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD 308 (445)
|||+-.. .+++..++|+.||-||--+-. .+.=+..+++||.+--++..+++-+-+.-. ..+..|-
T Consensus 108 s~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r------------~~~~~f~ 173 (389)
T KOG1975 108 SVLINLY--TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR------------FKKFIFT 173 (389)
T ss_pred HHHHHHH--HCCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHH------------HHCCCCE
T ss_conf 9999998--6122300000567762076765514563576534340099999999999866------------6413651
Q ss_pred EEEECCCCCCCCHHHCC--CHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHH
Q ss_conf 68961674211001101--103-----------33288667788999999999999986089828999774788343999
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRH--PDV-----------LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~--Pd~-----------~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~ 375 (445)
.+++-+-||+.-..-+- +|- -+....+ +--+-+|.+++.+|+|||..+=.+ -|-+
T Consensus 174 a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFete------e~ar~~l~Nva~~LkpGG~FIgTi------Pdsd 241 (389)
T KOG1975 174 AVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETE------ESARIALRNVAKCLKPGGVFIGTI------PDSD 241 (389)
T ss_pred EEEEEECCCHHHHHHHCCCCCCCCCEEEEEEEEEEEECCH------HHHHHHHHHHHHHCCCCCEEEEEC------CCHH
T ss_conf 6999714416689874257898855565545675431338------889999998996358885799846------9689
Q ss_pred HHHHHHHHC
Q ss_conf 899999968
Q gi|254780666|r 376 VVQKVLRSS 384 (445)
Q Consensus 376 vV~~fL~~~ 384 (445)
+|-+=|...
T Consensus 242 ~Ii~rlr~~ 250 (389)
T KOG1975 242 VIIKRLRAG 250 (389)
T ss_pred HHHHHHHHC
T ss_conf 999999851
No 183
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.61 E-value=0.063 Score=34.00 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCCCCCCC----------HHHCCCH---
Q ss_conf 41000105967987765443204887417720774457743---4476689616742110----------0110110---
Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTG----------TIRRHPD--- 327 (445)
Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaPCSg~G----------t~rr~Pd--- 327 (445)
-+|.-+||+++=++-..+-++.+|+.|++++..|.+++.++ .+||..+-|+|-+=-| |+..---
T Consensus 176 k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGy 255 (354)
T COG1568 176 KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGY 255 (354)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCE
T ss_conf 33799831589999999999984833155403051045839888507764359633579999998511887358874536
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 33328866778899999999999
Q gi|254780666|r 328 VLWTRDTDDIVKSACFQRKLLLQ 350 (445)
Q Consensus 328 ~~w~~~~~~l~~l~~~Q~~iL~~ 350 (445)
.-..+.+..+.+.-++|+-+++.
T Consensus 256 fgiT~ressidkW~eiQr~lIn~ 278 (354)
T COG1568 256 FGITRRESSIDKWREIQRILINE 278 (354)
T ss_pred EEEEECCCCHHHHHHHHHHHHHH
T ss_conf 86641426288999999999874
No 184
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=93.27 E-value=0.17 Score=30.92 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHH------------HCCCCCCEEEEECCCCCCCCC
Q ss_conf 56321331003556447000010256841000105967987765443------------204887417720774457743
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL------------DRLHLYAEDIIEMDAFDYCPK 304 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~------------~R~g~~~~~~~~~D~~~~~~~ 304 (445)
|...++.+||=--||.|---..|++.+-.|+++|+|+.-++.+.+.. .+....++.+.++|..++.+.
T Consensus 18 l~~~~~~rvlVPlCGks~D~~wLa~~G~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~l~~~ 97 (203)
T pfam05724 18 LNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFTLPRE 97 (203)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHCCCHH
T ss_conf 38999988999689985999999838984899956799999999973788751013662132058648997732137843
Q ss_pred --CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf --44766896167421100110110333288667788999999999999986089828999774788343
Q gi|254780666|r 305 --KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 (445)
Q Consensus 305 --~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE 372 (445)
++||.|.==+---+. +|+.| .+-..+..++|+|||+++-.|--..+.+
T Consensus 98 ~~g~fD~IyDraal~AL-----pp~~R---------------~~Ya~~l~~lL~pgg~~lLitl~y~~~~ 147 (203)
T pfam05724 98 ELGKFDLIYDRAALCAL-----PPEMR---------------PRYAKQMYELLPPGGEGLLITLDYPQTD 147 (203)
T ss_pred HCCCCCEEEEECCEEEC-----CHHHH---------------HHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 46873489970323538-----98999---------------9999999997189966999999738655
No 185
>KOG1661 consensus
Probab=93.12 E-value=0.22 Score=29.93 Aligned_cols=99 Identities=24% Similarity=0.240 Sum_probs=68.9
Q ss_pred CCCCCCEECCCCCCCCCEEE----ECCCCCCHHHHHCCHHHHHHHHHHHHCC----------CCCCEEEEECCCCCCCC-
Q ss_conf 32133100355644700001----0256841000105967987765443204----------88741772077445774-
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCNLDRL----------HLYAEDIIEMDAFDYCP- 303 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~----l~~~~~~i~A~D~~~~Rl~~l~~~~~R~----------g~~~~~~~~~D~~~~~~- 303 (445)
.+||...||..+|-|==|+- +..+++..+.+|..+.=++..++|+..- ......++++|.+....
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred HCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 23473101337874089999999945777665144415999999998777650473045564148647996776234775
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
..+||+|-|-|--|. +..+-.+.|++||+|+--.
T Consensus 160 ~a~YDaIhvGAaa~~----------------------------~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661 160 QAPYDAIHVGAAASE----------------------------LPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCCCCEEEECCCCCC----------------------------CHHHHHHHHCCCCEEEEEE
T ss_conf 687665787667622----------------------------4799998634387289861
No 186
>KOG2078 consensus
Probab=93.01 E-value=0.061 Score=34.13 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=84.6
Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCCCCCC--CCCEE----
Q ss_conf 32133100355644700001025684100010596798776544320488--74177207744577434--47668----
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK--LFDAV---- 310 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~--~~~~~~~~D~~~~~~~~--~fD~i---- 310 (445)
-+||+.|-|+|||-|-=.+-.+..+.+|+|+|.++.-++-|+.|++--.+ .++++.+.||..+...+ .+-+-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~e~~~~~~~I~~~ 326 (495)
T KOG2078 247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQEPLPYKRLIADE 326 (495)
T ss_pred CCCCCHHHHHHCCCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHHHCCCCHHHHHHHHH
T ss_conf 58741334440476743350222585899347997899999975653665613636644618887412874256677787
Q ss_pred EEC--CCCCCC-CH-HHCCCHHH---HCCCHHHHHHHHHHHHHHHHHHHHHCCC-----CCE----EEEEECCCCH--HH
Q ss_conf 961--674211-00-11011033---3288667788999999999999986089-----828----9997747883--43
Q gi|254780666|r 311 LVD--APCSST-GT-IRRHPDVL---WTRDTDDIVKSACFQRKLLLQGISFVKP-----GGI----VVFSNCSLDK--QD 372 (445)
Q Consensus 311 LlD--aPCSg~-Gt-~rr~Pd~~---w~~~~~~l~~l~~~Q~~iL~~a~~~lk~-----gG~----lvYsTCSi~~--eE 372 (445)
.+| -|=+|| ++ +.+-|.-. |..--.-+..|...-.+-|.+-.-.+.. .+. .+|+=|++++ +-
T Consensus 327 v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d~~~lplvhcy~F~k~~~~~~s 406 (495)
T KOG2078 327 VLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPIDKTPLPLVHCYCFSKLFCDVSS 406 (495)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCC
T ss_conf 76543201023223345678741221044443321573999988987678874357445654305888987612567771
Q ss_pred CHH-HHHHHHHHCC
Q ss_conf 999-8999999688
Q gi|254780666|r 373 SEE-VVQKVLRSSP 385 (445)
Q Consensus 373 ne~-vV~~fL~~~~ 385 (445)
+|+ |+++....-+
T Consensus 407 ~e~~V~ar~~~~~k 420 (495)
T KOG2078 407 TEDLVTARIVAALK 420 (495)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 58899998876046
No 187
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=92.88 E-value=0.056 Score=34.41 Aligned_cols=124 Identities=16% Similarity=0.284 Sum_probs=93.5
Q ss_pred CCCEECCCCCCCCCEEEECCC--CCCHHHHHC--------CHHHHHHHHHHHHCCCCC--CEEEEECCCCCCCC----CC
Q ss_conf 331003556447000010256--841000105--------967987765443204887--41772077445774----34
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVS--GAKVTALDV--------SKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCP----KK 305 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~--------~~~Rl~~l~~~~~R~g~~--~~~~~~~D~~~~~~----~~ 305 (445)
.-.+||..+|-|+=-..+|.. .-..+.+|+ +..=+-..-..++++|+. |+.+.+.||..+.. ..
T Consensus 20 ~p~~~EIGcG~G~fl~~~A~~nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~~~~~~~ 99 (216)
T TIGR00091 20 KPLVLEIGCGKGRFLIKMAKQNPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLEKFFPDG 99 (216)
T ss_pred CCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 54489841687602689977279972777899988741022728998875576617844213522136023204540078
Q ss_pred --CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH-
Q ss_conf --47668961674211001101103332886677889999999999999860898289997747883439998999999-
Q gi|254780666|r 306 --LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR- 382 (445)
Q Consensus 306 --~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~- 382 (445)
.-.+|.+-=| | .|.+....-.+ -+|-..|..++..|++||.+--.| -|+..-+.-|+
T Consensus 100 PP~l~k~f~~FP-----------D-PW~KkRH~KRR--~~~~~Fl~~~~~~L~~~G~i~~~T------D~~~lfE~mL~~ 159 (216)
T TIGR00091 100 PPSLSKVFLNFP-----------D-PWPKKRHNKRR--ITQPHFLKEVANVLKKGGVIELKT------DNEPLFEDMLKV 159 (216)
T ss_pred CCCEEEEEEECC-----------C-CCHHHHHCCCC--CCCHHHHHHHHHHCCCCCEEEEEC------CCHHHHHHHHHH
T ss_conf 980456888778-----------8-95102102234--256789999999704596899970------784678999999
Q ss_pred --HCC
Q ss_conf --688
Q gi|254780666|r 383 --SSP 385 (445)
Q Consensus 383 --~~~ 385 (445)
+++
T Consensus 160 l~~~~ 164 (216)
T TIGR00091 160 LSEND 164 (216)
T ss_pred HHHCC
T ss_conf 96536
No 188
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=92.30 E-value=0.76 Score=26.01 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=73.6
Q ss_pred CCEECCCCCCCCCEEEE-CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECCCCCCCC
Q ss_conf 31003556447000010-256841000105967987765443204887417720774457743-4476689616742110
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTG 320 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l-~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-~~fD~iLlDaPCSg~G 320 (445)
...||+-||=|-=|-++ +.--.+|..+|..++=++.+++++..-+-...++.+.-..++.|. ++||.|.
T Consensus 57 ~~alDcGAGIGRVTk~lL~~~f~~VDlVEpv~~Fl~~ak~~l~~~~~~~~~~~~~gLQdf~P~~~~YD~IW--------- 127 (217)
T pfam05891 57 LVALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEEKKKVGNFFCVGLQDFTPEEGRYDLIW--------- 127 (217)
T ss_pred CEEEECCCCCCEECHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEE---------
T ss_conf 26654267636112667887548135754449999999998740379765389736101689998176998---------
Q ss_pred HHHCCCHHHH---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0110110333---288667788999999999999986089828999
Q gi|254780666|r 321 TIRRHPDVLW---TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 (445)
Q Consensus 321 t~rr~Pd~~w---~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY 363 (445)
+-| .++-+|+- +-|.++...|+|+|.+|-
T Consensus 128 -------~QW~~ghLtD~dlv-------~Fl~RCk~~L~~~G~Ivv 159 (217)
T pfam05891 128 -------IQWCIGHLTDEDLV-------AFLKRCKSGLKPNGIIVI 159 (217)
T ss_pred -------EHHHHCCCCHHHHH-------HHHHHHHHHCCCCCEEEE
T ss_conf -------05845218889999-------999999984789864998
No 189
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.19 E-value=0.078 Score=33.33 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=56.0
Q ss_pred CCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----CCCEEEECCCCC
Q ss_conf 3100355644700001025684-10001059679877654432048874177207744577434----476689616742
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAPCS 317 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~----~fD~iLlDaPCS 317 (445)
.+++|+|||-||=++-+...+- .+.|+|+++..++..+.|..- ..++..|......+. .+|.|+==+||-
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC-----CCCHHHHHHHHCHHHCCCCCCCEEEECCCCC
T ss_conf 54998658756588999864984899874698899999985888-----7420303766052223556763798589972
Q ss_pred CCCHHHCC
Q ss_conf 11001101
Q gi|254780666|r 318 STGTIRRH 325 (445)
Q Consensus 318 g~Gt~rr~ 325 (445)
+.=+.+++
T Consensus 79 ~FS~aG~r 86 (328)
T COG0270 79 DFSIAGKR 86 (328)
T ss_pred CHHHHCCC
T ss_conf 13340776
No 190
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=91.87 E-value=0.44 Score=27.76 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=39.4
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
.++||.|++|+| -++++=+.+.+.+ +-.++|+||.|+-+| -+|+++.+.+.|.-
T Consensus 83 ~~~fD~vi~DPP---------------FLseec~~K~a~t-------~~~L~k~~~kli~~T----g~~~~~~~~kll~~ 136 (161)
T pfam10237 83 KGKFDRVIADPP---------------FLSEECLTKTAIT-------IKLLLKPDSKLLLCT----GERMEDLAAKLLGL 136 (161)
T ss_pred HCCCCEEEECCC---------------CCCHHHHHHHHHH-------HHHHHCCCCEEEEEC----HHHHHHHHHHHCCC
T ss_conf 086788998999---------------9899999999999-------999808998799934----89999999997298
Q ss_pred C
Q ss_conf 8
Q gi|254780666|r 384 S 384 (445)
Q Consensus 384 ~ 384 (445)
+
T Consensus 137 ~ 137 (161)
T pfam10237 137 K 137 (161)
T ss_pred E
T ss_conf 2
No 191
>KOG3115 consensus
Probab=91.44 E-value=1.2 Score=24.45 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=92.6
Q ss_pred CCCEECCCCCCCCCEEEECC---------CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCC
Q ss_conf 33100355644700001025---------6841000105967987765443204887417720774457743----4476
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV---------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----KLFD 308 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~---------~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----~~fD 308 (445)
.-...|..||=||=...|.. -.-++--+|--..|++.++.+-.--.+.|+.+....+..+.+. +.-+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred CCEEEEECCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHCCCC
T ss_conf 64278604676501012054686301220012688889999999997526543345653034212022051034312334
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCE
Q ss_conf 68961674211001101103332886677889999999999999860898289997747883439998999999688741
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~ 388 (445)
....=-| +|- .|+ ...+-.-++..++...+-+|++||.+.++|=- +|--+-.-.-|++||-+-
T Consensus 141 kmff~fp---------dpH-fk~----~khk~rii~~~l~~eyay~l~~gg~~ytitDv---~elh~wm~~~~e~hplfe 203 (249)
T KOG3115 141 KMFFLFP---------DPH-FKA----RKHKWRIITSTLLSEYAYVLREGGILYTITDV---KELHEWMVKHLEEHPLFE 203 (249)
T ss_pred CCEEECC---------CHH-HHH----HHCCCEEECHHHHHHHHHHHHCCCEEEEEEEH---HHHHHHHHHHHHHCCHHH
T ss_conf 4403258---------805-766----52121012034798777422138448997008---888999999887274765
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 781376323355664345586880898876323557778886314667654127889
Q gi|254780666|r 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~~~~~ 445 (445)
.+........+....-.....+|-- . .+.| -.=|+|.++|+..|.
T Consensus 204 ~lt~ee~~~d~~v~~~~~~teeg~k-v----------~r~~-g~~f~a~f~r~~~~~ 248 (249)
T KOG3115 204 RLTEEEEENDPCVELLSNATEEGKK-V----------ARNG-GKKFVAVFRRIPNPA 248 (249)
T ss_pred HCCHHHHCCCCCHHHHHHHHHHCCC-C----------CCCC-CCEEEEEEEECCCCC
T ss_conf 2134552378302233333554013-3----------3567-762100245246787
No 192
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=90.88 E-value=0.53 Score=27.18 Aligned_cols=108 Identities=23% Similarity=0.263 Sum_probs=77.7
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCC---CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------CCC
Q ss_conf 2356321331003556447000010256---8410001059679877654432048874177207744577------434
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKK 305 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~---~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------~~~ 305 (445)
...+|..|..||.+..|-|-=|-.|++. ...++|+|.+..=...|.+.- ..+.++++|+..+. ...
T Consensus 42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred HCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHC-----CCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 4348445976477769866768999965799543689982779999999758-----87513054056578778652797
Q ss_pred CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 47668961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 306 ~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
.||.|+.-.|--.. | . +.-.+||+.+...+..||-+|--|-+
T Consensus 117 ~~D~viS~lPll~~------P-------~-------~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 117 FFDSVISGLPLLNF------P-------M-------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EEEEEEECCCCCCC------C-------H-------HHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 40168865600248------6-------7-------78999999999856899727999846
No 193
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=90.62 E-value=0.66 Score=26.46 Aligned_cols=44 Identities=34% Similarity=0.385 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCCEEEEEEC---C----------CCHHHCHHHHHHHHHHCCCCEE
Q ss_conf 9999999986089828999774---7----------8834399989999996887417
Q gi|254780666|r 345 RKLLLQGISFVKPGGIVVFSNC---S----------LDKQDSEEVVQKVLRSSPIPVE 389 (445)
Q Consensus 345 ~~iL~~a~~~lk~gG~lvYsTC---S----------i~~eEne~vV~~fL~~~~~~~~ 389 (445)
+.-+.+.+++|||||.||++-. | -+ -=||+.|++.|++....++
T Consensus 179 ~~av~ni~~LLkpGG~Lil~gvl~~t~Y~vG~~~F~~l-~l~ee~v~~Al~~aG~~i~ 235 (261)
T pfam01234 179 CRALRNLASLLKPGGHLVLGGVLEESWYMFGEKKFSCL-YLSKEVVEDALVDAGLDVE 235 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCEEEECCEECCEE-ECCHHHHHHHHHHCCCEEE
T ss_conf 99999998647888469999861773488789860225-2289999999997797789
No 194
>KOG0820 consensus
Probab=90.36 E-value=0.25 Score=29.56 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=87.9
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf 563213310035564470000102568410001059679877654432048874-1772077445774344766896167
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAP 315 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445)
.+.+|++.||.+.-|+|.=|--|++.+.+|+|+|++++=+..+.++.+-.-..+ -+++..|..+.. ...||.++-.-|
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~P~fd~cVsNlP 132 (315)
T KOG0820 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-LPRFDGCVSNLP 132 (315)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCC-CCCCCEEECCCC
T ss_conf 4789987799957987789999997208489994080789999998669986560468850312578-851031122698
Q ss_pred C--CCCCHHHCCCHHHHCCCHHHHHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 4--2110011011033328866778899--999999999998608982899977478834
Q gi|254780666|r 316 C--SSTGTIRRHPDVLWTRDTDDIVKSA--CFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445)
Q Consensus 316 C--Sg~Gt~rr~Pd~~w~~~~~~l~~l~--~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445)
- |+-+++- .+....+-+++ -+|++ -|.+++..-|-..|+--|+.-+
T Consensus 133 yqISSp~vfK-------LL~~~~~fr~AvlmfQ~E---fa~RLva~pgd~~Ycrlsin~q 182 (315)
T KOG0820 133 YQISSPLVFK-------LLLHRPVFRCAVLMFQRE---FALRLVARPGDSLYCRLSINVQ 182 (315)
T ss_pred CCCCCHHHHH-------HCCCCCCCCEEEEEHHHH---HHHHHCCCCCCCHHCEEEHHHH
T ss_conf 5336788998-------627887760234402566---6555135889841100111137
No 195
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=90.36 E-value=0.67 Score=26.42 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred CEECCCCCCCCCE------EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCEEEECCCC
Q ss_conf 1003556447000------01025684100010596798776544320488-7417720774457743447668961674
Q gi|254780666|r 244 SVLDLCAAPGGKT------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445)
Q Consensus 244 ~VLD~CAAPGGKT------~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445)
.|+=+.||.|.=- +..+...-+|+|+|+++..+-.|+.++++-+= ..|.++..|-|.+....++|.++=-
T Consensus 189 vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~p~k~Di~VSE--- 265 (447)
T pfam05185 189 VILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKGPEKADILVSE--- 265 (447)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCEEEEE---
T ss_conf 99998589648999999999981996699999568779999999850543178069990800057998773589752---
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2110011011033328866778899999999999998608982899
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
=+|.++-| .++|+ -|+.+-+++||+|+-|
T Consensus 266 -LLGSFGDN-----ELSPE-----------CLdg~q~~lk~~gIsI 294 (447)
T pfam05185 266 -LLGSFGDN-----ELSPE-----------CLDGAQRFLKPDGISI 294 (447)
T ss_pred -CCCCCCCC-----CCCHH-----------HHHHHHHHCCCCCEEE
T ss_conf -11666665-----57977-----------8778997468984682
No 196
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.20 E-value=0.28 Score=29.24 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=61.4
Q ss_pred CCCCCCCCEECCCCCCCCCEE-EECC-CC-CCHHHHHCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCC-CCCCCCEEE
Q ss_conf 563213310035564470000-1025-68-4100010596798776544320488741-77207744577-434476689
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTA-QLIV-SG-AKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYC-PKKLFDAVL 311 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~-~l~~-~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~-~~~~~D~~~~~-~~~~fD~iL 311 (445)
.+..+|++|+=.-+||.|=.+ +++. .+ .+|+++|++++|++.. +++|...+ .....|...+. ....||.|+
T Consensus 165 ~~~~~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a----~~~Ga~~~i~~~~~~~~~~~~~~g~~Dvvi 240 (343)
T PRK09880 165 AGDLQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLA----RQMGADVLVNPQNDDMDHWKAEKGYFDVSF 240 (343)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH----HHCCCCEEECCCCCCHHHHHHHCCCCCEEE
T ss_conf 4775698899984776799999999986998799997978999999----972997998798743999996369977899
Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 61674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
| |+|.. ..++.|..++++||+++..-..
T Consensus 241 -e--~~G~~-------------------------~~~~~al~~~r~gG~iv~vG~~ 268 (343)
T PRK09880 241 -E--VSGHP-------------------------SSVNTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred -E--ECCCH-------------------------HHHHHHHHHCCCCEEEEEEECC
T ss_conf -9--21999-------------------------9999999737798399999727
No 197
>KOG1227 consensus
Probab=89.88 E-value=0.17 Score=30.76 Aligned_cols=77 Identities=26% Similarity=0.195 Sum_probs=61.5
Q ss_pred CCCCEECCCCCCCCCEE-EECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 13310035564470000-102568-410001059679877654432048874-177207744577434476689616742
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTA-QLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCS 317 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~-~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaPCS 317 (445)
.|+.|.|+-||=|==|+ -+...+ ..|+|+|.+++-++.|+.+++-.++.. -.++.+|-+...+....|+|-|--==|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlPS 273 (351)
T KOG1227 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLPS 273 (351)
T ss_pred CCCHHHHHHCCCCEEEEEHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHEEECCCCC
T ss_conf 65301223426544874023005745799994587999999987774115788786651023667553202036434565
No 198
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=89.77 E-value=0.4 Score=28.06 Aligned_cols=135 Identities=12% Similarity=0.113 Sum_probs=96.1
Q ss_pred CCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCCCCCEEEECC
Q ss_conf 2133100355644700001025--6841000105967987765443204887417720774457---7434476689616
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY---CPKKLFDAVLVDA 314 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~---~~~~~fD~iLlDa 314 (445)
.+.+.+|...=|-|--..+++. ..--.+.+|+...-+..+-..++..++.|+.+...|++.+ .+...+|+|.+==
T Consensus 343 ~k~kv~LEIGFG~Ge~L~~~A~~nP~~~fIG~Evy~nGva~ll~~i~~~~l~Niri~~~D~~~ll~~lp~~sld~i~ilf 422 (503)
T PRK01544 343 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 422 (503)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 56708999536987999999996898888999406566999999999869975998733599999856620404167878
Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECC
Q ss_conf 742110011011033328866778899999999999998608982899977478834399989999996887417813
Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 (445)
Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~ 392 (445)
| | .|-+...--.+ -+|.+.|..-.+.||+||.+..+|=.-.-. +++-..+.+|+ .|+...
T Consensus 423 P-----------D-PWpKkRH~KRR--li~~efl~~l~~~Lk~~G~l~~aTD~~~Y~---~~~le~~~~~~-~f~~~~ 482 (503)
T PRK01544 423 P-----------D-PWIKNKQKKKR--IFNKERLKILQDKLKDNGNLVFASDIENYF---YEAIELIQQNG-NFEIIN 482 (503)
T ss_pred C-----------C-CCCCCCHHHHC--CCCHHHHHHHHHHHCCCCEEEEECCCHHHH---HHHHHHHHHCC-CCEEEC
T ss_conf 9-----------9-99755322001--779999999999714698899976788999---99999998679-965662
No 199
>KOG1499 consensus
Probab=89.77 E-value=0.53 Score=27.17 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCC-CCCCCCEEEECCCC
Q ss_conf 213310035564470000102568-410001059679877654432048874-177207744577-43447668961674
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC-PKKLFDAVLVDAPC 316 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~-~~~~fD~iLlDaPC 316 (445)
..+..|||+-||-|-=|+--+..+ .+|+|+|-|.-- +...+...-.|+.+ ++++.+...+.. |.++.|.|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIv----- 132 (346)
T KOG1499 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIV----- 132 (346)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEE-----
T ss_conf 0797899757881288999887375339999626899-9999999856866059995030578764755402996-----
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHH----HHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 2110011011033328866778899999----999999998608982899977478834
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQ----RKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q----~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445)
.-|- -+.-+- -.+|..-=+.|+|||.+.=++|++.-.
T Consensus 133 -----------SEWM-------Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~ 173 (346)
T KOG1499 133 -----------SEWM-------GYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLA 173 (346)
T ss_pred -----------EHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEE
T ss_conf -----------3012-------4787776566645533330047795576661137898
No 200
>KOG1709 consensus
Probab=89.73 E-value=1.1 Score=24.92 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC---CCCCCCCCCCCCEEEECCC
Q ss_conf 21331003556447000010256-8410001059679877654432048874177207---7445774344766896167
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM---DAFDYCPKKLFDAVLVDAP 315 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~---D~~~~~~~~~fD~iLlDaP 315 (445)
.+|.+||.+.=|=|--.+-+.+. -.+-+-+|.++.=+++|+++.=|-. +||.+..+ |...--+++.||.|+-|.=
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred HCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCC-CCEEEEECCHHHHHCCCCCCCCCEEEEECH
T ss_conf 1796489842316778888863598631787359789999986366544-546887134676440144567562675130
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHC
Q ss_conf 4211001101103332886677889999999999999860898289997747883439
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEn 373 (445)
.-.-+|+-.+. +++..+|||+|.+-| |-.+-.-|
T Consensus 179 ---------------~e~yEdl~~~h-------qh~~rLLkP~gv~Sy--fNg~~~~~ 212 (271)
T KOG1709 179 ---------------SELYEDLRHFH-------QHVVRLLKPEGVFSY--FNGLGADN 212 (271)
T ss_pred ---------------HHHHHHHHHHH-------HHHHHHCCCCCEEEE--ECCCCCCH
T ss_conf ---------------16789999999-------877640087744888--43766412
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=89.72 E-value=0.86 Score=25.59 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=71.4
Q ss_pred CCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCC--CCCCEEEEECCCCCC--CCCCCCCEEEECCCC
Q ss_conf 1331003556447000010256841000105967987765443204--887417720774457--743447668961674
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL--HLYAEDIIEMDAFDY--CPKKLFDAVLVDAPC 316 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~--g~~~~~~~~~D~~~~--~~~~~fD~iLlDaPC 316 (445)
..++||=...|=||=.-+++....+|+.+|+++.=++..++-+--. +..+..+. ++..+ ...++||.|++|.
T Consensus 72 ~Pk~VLIIGGGDGG~~REvlKH~~~v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~--~~~~~~~~~~~~fDvIIvDs-- 147 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFT--HAKQLLDLDIKKYDLIICLQ-- 147 (262)
T ss_pred CCCEEEEECCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCHHHHHHHCCCCEE--HHHHHHHHCCCCCCEEEECC--
T ss_conf 97879998687559999987289766999967899999999785656541399611--39998761547668899889--
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 211001101103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
+.+....+. | .+.|++||.+|.-+=|.+-+ .+.+...++.-.
T Consensus 148 ---------------l~~~~~~~~-------l---~~~L~~~Gi~v~Q~esp~~~--~~~~~~~~~~~~ 189 (262)
T PRK00536 148 ---------------EPDIHKIDG-------L---KRMLKEDGVFISVAKHPLLE--HVSMQNALKNMG 189 (262)
T ss_pred ---------------CCCCCHHHH-------H---HHHHCCCCEEEECCCCHHHC--HHHHHHHHHHHH
T ss_conf ---------------998054999-------9---99858998999838971207--999999999988
No 202
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=89.59 E-value=0.092 Score=32.82 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=61.4
Q ss_pred CCCCCCEECCCCCCCCCEEE---ECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------CCCCC
Q ss_conf 32133100355644700001---025--68410001059679877654432048874177207744577------43447
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQ---LIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLF 307 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~---l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------~~~~f 307 (445)
..|--.|+|+=||-|--.+= =+. .--+++++|++++-.+.+++|++--+++|+++.+.|+-.+- ....|
T Consensus 92 nePyi~~~dALSasGiRaiRya~E~~fngv~~v~~ND~~P~Ave~I~~N~~~N~v~N~~v~n~Da~~~L~~~nkat~~~F 171 (462)
T TIGR00308 92 NEPYIEIADALSASGIRAIRYALEVEFNGVKKVFANDINPKAVESIKNNVKLNSVENIEVINEDAAAVLRKRNKATFRKF 171 (462)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHCCCC
T ss_conf 54378999875104088999987446576106775347737889988412324422765455037999875121123676
Q ss_pred CEEEECCC
Q ss_conf 66896167
Q gi|254780666|r 308 DAVLVDAP 315 (445)
Q Consensus 308 D~iLlDaP 315 (445)
|.|=+||=
T Consensus 172 ~viDiDPF 179 (462)
T TIGR00308 172 EVIDIDPF 179 (462)
T ss_pred CEEEECCC
T ss_conf 43764787
No 203
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=89.46 E-value=1.8 Score=23.26 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=72.6
Q ss_pred CCEECCCCCCCCCEEEEC-CCC---CCHHHHHCCHHHHHHHHHHHHCCCC-CC-EEEEECCCCCCCCC-CCCCEEEECCC
Q ss_conf 310035564470000102-568---4100010596798776544320488-74-17720774457743-44766896167
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLI-VSG---AKVTALDVSKRRLEKLRCNLDRLHL-YA-EDIIEMDAFDYCPK-KLFDAVLVDAP 315 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~-~~~---~~i~A~D~~~~Rl~~l~~~~~R~g~-~~-~~~~~~D~~~~~~~-~~fD~iLlDaP 315 (445)
.+|.=..+||=-=|+.++ ... ..++.+|+++.+....++-++++|. .. ..+...|+.+...+ ..||.|++-|=
T Consensus 123 ~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~lAAL 202 (277)
T pfam03059 123 SRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVFLAAL 202 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEEEHHH
T ss_conf 44899637886138999988508873143312788999999999986553004728995264444444454768987211
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 421100110110333288667788999999999999986089828999774788343999899999
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445)
--+ +. +--.+|+++-.+..+||+.|+|=. ..=.+.||
T Consensus 203 VGm--------------~~-------e~K~~I~~hL~k~m~~Ga~l~~Rs--------a~GlR~~L 239 (277)
T pfam03059 203 VGM--------------DK-------EEKAKVIDHLGKHMAPGALLVLRS--------AHGARAFL 239 (277)
T ss_pred CCC--------------CH-------HHHHHHHHHHHHHCCCCCEEEEEC--------CHHHHHHC
T ss_conf 354--------------33-------359999999997458996799961--------12178762
No 204
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=89.34 E-value=1.2 Score=24.42 Aligned_cols=127 Identities=22% Similarity=0.256 Sum_probs=76.8
Q ss_pred CCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHH--HHCCC---CCC--EEEEECCCCCCCC--CCCCCEE
Q ss_conf 33100355644700001025--684100010596798776544--32048---874--1772077445774--3447668
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCN--LDRLH---LYA--EDIIEMDAFDYCP--KKLFDAV 310 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~--~~R~g---~~~--~~~~~~D~~~~~~--~~~fD~i 310 (445)
-++||=+.-|-|--.-+|.. .-++|+-+|.+++-++..+.+ +...+ +.+ +.+++.|+.+|-. .+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCEE
T ss_conf 42699972875187999971888552789743889998730026766603677668756999654788997413455579
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 9616742110011011033328866778899999999999998608982899-97747883439998999999688
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-YsTCSi~~eEne~vV~~fL~~~~ 385 (445)
+||-|=-.+-++.| -.+ .+--.-+.+.|+++|++| -++-..+.-|-=.-|.+-+++..
T Consensus 370 IVDl~DP~tps~~r------lYS-----------~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG 428 (508)
T COG4262 370 IVDLPDPSTPSIGR------LYS-----------VEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAG 428 (508)
T ss_pred EEECCCCCCCCHHH------HHH-----------HHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEHHHHHHCC
T ss_conf 99689989951343------210-----------899999997337575499954887657730112054787376
No 205
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=88.63 E-value=0.26 Score=29.50 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=45.7
Q ss_pred CCCCCCEECCCCCCCCCEEEECCC---CC------CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCCCCC
Q ss_conf 321331003556447000010256---84------1000105967987765443204887417720774---45774344
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVS---GA------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---FDYCPKKL 306 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~---~~------~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~---~~~~~~~~ 306 (445)
..||++|||+-||-|-=-..|.+. .| ++..+|++..-+-. -++| | +.+++.|. +....++.
T Consensus 11 Ip~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~A---c~~R-G---v~VIq~Dld~GL~~F~D~~ 83 (205)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLA---CVAR-G---VSVIQGDLDEGLEAFPDKS 83 (205)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHH---HHHC-C---CCEECCCCCCCCCCCCCCC
T ss_conf 6888736410168878999999743789888712000102345445999---9862-5---2013006003401167887
Q ss_pred CCEEEECC
Q ss_conf 76689616
Q gi|254780666|r 307 FDAVLVDA 314 (445)
Q Consensus 307 fD~iLlDa 314 (445)
||.|+|-.
T Consensus 84 FD~ViLsQ 91 (205)
T TIGR02081 84 FDYVILSQ 91 (205)
T ss_pred CCEEEECH
T ss_conf 66254213
No 206
>PRK11524 putative methyltransferase; Provisional
Probab=88.47 E-value=1.3 Score=24.17 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCC------CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 632123222356------321331003556447000010256841000105967987765443204
Q gi|254780666|r 227 DASASIPVQLFG------TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 (445)
Q Consensus 227 D~aSql~~~~l~------~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~ 286 (445)
+-.+|.|..++. -.+|+.|||-+||-|.=...-...+-+-+.+|+++.=++..++++++.
T Consensus 188 ~HPt~kP~~L~e~lI~~~S~egDlVLDPF~GSGTT~~aA~~lgR~~IGiEi~~eY~~iA~~Ri~~~ 253 (284)
T PRK11524 188 NHPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINEEYIKMGLRRLDVA 253 (284)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf 889879299999999974889998995798886899999982995899968999999999998735
No 207
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=88.34 E-value=0.26 Score=29.47 Aligned_cols=125 Identities=22% Similarity=0.194 Sum_probs=86.5
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--C
Q ss_conf 2123222356321331003556447000010256841-000105967987765443204887417720774457743--4
Q gi|254780666|r 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--K 305 (445)
Q Consensus 229 aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--~ 305 (445)
--+-++..+++.+++.||-...|=|.=|..|+++..+ |+|+|++..=++.|++...--.-.+..|+..|+...... .
T Consensus 17 ~~~~Iv~~~~~~~~~~vlEIGPG~G~LT~~Ll~~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~~~~i~~Dalk~~~~~~~ 96 (277)
T TIGR00755 17 VIQKIVEAANVLENDVVLEIGPGLGALTEPLLKRAKKLVTAIEIDPRLAEILRKLLSEKLYENLEVIEGDALKVDLNSLE 96 (277)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCEEEECCCHHH
T ss_conf 99999997437899779997388207899999825984899972678999987521543324257871444541232043
Q ss_pred CCC-----EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHH----H---------HHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 476-----689616742110011011033328866778899----9---------9999999999860898289997747
Q gi|254780666|r 306 LFD-----AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA----C---------FQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 306 ~fD-----~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~----~---------~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
.|+ .|+=- +.|..+..-+.+|. . +|+|+- -++++.-|.=-||-=|
T Consensus 97 ~~~~~~~~~vv~N--------------LPY~Issp~~~~Ll~~~~~~~~~~~vlM~QkEvA---~Rl~A~p~sk~Yg~LS 159 (277)
T TIGR00755 97 DFPKEDKLKVVSN--------------LPYNISSPLIFKLLKEEEKPKFRLAVLMVQKEVA---ERLTAKPGSKDYGRLS 159 (277)
T ss_pred HCCCCCCCEEEEE--------------CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHHH---HHHCCCCCCCCCHHHH
T ss_conf 3167898579850--------------7743248999999986136444777887426777---7651899984100698
Q ss_pred CCH
Q ss_conf 883
Q gi|254780666|r 368 LDK 370 (445)
Q Consensus 368 i~~ 370 (445)
+.-
T Consensus 160 V~~ 162 (277)
T TIGR00755 160 VLV 162 (277)
T ss_pred HHH
T ss_conf 887
No 208
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.08 E-value=0.28 Score=29.28 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=56.1
Q ss_pred CCCCCCCCEECCCCCCCCCE-EEECCC-CC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC---CCC---CCCCCCCC
Q ss_conf 56321331003556447000-010256-84-10001059679877654432048874177207---744---57743447
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKT-AQLIVS-GA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM---DAF---DYCPKKLF 307 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT-~~l~~~-~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~---D~~---~~~~~~~f 307 (445)
....+|++||=+-|||=|-. .+++.. ++ .|+++|.++.|++.++ ++|... +++. +.. .......|
T Consensus 156 ~~~~~g~~vlV~GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~----~lGAd~--~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK----SLGAMQ--TFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCCE--EECCCCCCHHHHHHHHCCCCC
T ss_conf 05888986999899838999999999859976999928999999999----729989--986887799999998629988
Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 668961674211001101103332886677889999999999999860898289997
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
|.|++|+- |.. +.++.+..+++++|+++-.
T Consensus 230 d~vvid~~--G~~-------------------------~~~~~a~~~~~~~G~iv~~ 259 (347)
T PRK10309 230 DQLILETA--GVP-------------------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CEEEEECC--CCH-------------------------HHHHHHHHHHCCCEEEEEE
T ss_conf 86999799--998-------------------------9999999961897499998
No 209
>KOG2782 consensus
Probab=88.06 E-value=0.14 Score=31.41 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 8999999999999986089828999774788343999899999968
Q gi|254780666|r 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 339 ~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
++..+|-.+ .-+...+.|||+|+ |-|++.-|.--|-+.|+.-.
T Consensus 243 el~~~~~~~-~l~~~vl~~~grl~--~isfhSLed~vvkr~~~~i~ 285 (303)
T KOG2782 243 ELKTLQNSL-YLSFDVLAPGGRLA--VISFHSLEDRVVKRTFLDIL 285 (303)
T ss_pred HHHHCCCCE-ECCCCCCCCCCCEE--EEEHHHHHHHHHHHHHHHHH
T ss_conf 465434745-33432467776079--98715678999999875331
No 210
>PRK10083 putative dehydrogenase; Provisional
Probab=87.95 E-value=0.4 Score=28.04 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=58.3
Q ss_pred CCCCCCCCCEECCCCCCCCCE-EEECCC--C-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---CCCCCC
Q ss_conf 356321331003556447000-010256--8-410001059679877654432048874177207744577---434476
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKT-AQLIVS--G-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFD 308 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT-~~l~~~--~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~---~~~~fD 308 (445)
...+.+|++|+=.-|||-|=. +|+++. + ..|++.|.++.|++.. +++|.+. +++.+..... .....|
T Consensus 155 ~~~~~~g~~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A----~~~GAd~--vi~~~~~~~~~~~~~~G~~ 228 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALA----KESGADW--VINNAQESLAEALAEKGVK 228 (339)
T ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH----HHCCCCE--EECCCCCCHHHHHHHCCCC
T ss_conf 618999988999587659999999999856997899937989999999----9719989--9848876699999853999
Q ss_pred E-EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 6-896167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 309 A-VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 309 ~-iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
. +.+|+- |. ...++.|.+++++||+++..-.
T Consensus 229 ~dvvid~~--g~-------------------------~~~~~~a~~~~~~gG~iv~~G~ 260 (339)
T PRK10083 229 PTLIFDAA--CH-------------------------PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CCEEEECC--CC-------------------------HHHHHHHHHHHHCCEEEEEEEC
T ss_conf 61999666--68-------------------------8999999998518809999925
No 211
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.87 E-value=0.86 Score=25.61 Aligned_cols=95 Identities=25% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCCCCCCEECCCCCCCCCEE-EECC-CC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECC-C----CCCCCCCCCC
Q ss_conf 563213310035564470000-1025-68-4100010596798776544320488741772077-4----4577434476
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTA-QLIV-SG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-A----FDYCPKKLFD 308 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~-~l~~-~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D-~----~~~~~~~~fD 308 (445)
..+.+|++|+=+-|||.|=.+ +++. .+ .+|+++|.++.|++.. +++|... +++.+ . ........||
T Consensus 116 ~~~~~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a----~~~Ga~~--~i~~~~~~~~~~~~~~g~g~D 189 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA----LSFGATA--LAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH----HHCCCCE--EECCCCHHHHHHHHHCCCCCC
T ss_conf 1789999899990786899999999984998799991998999999----9739989--837757799999972788870
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 689616742110011011033328866778899999999999998608982899977
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
.|+ | |+|. .+.++.|.+++++||+++..-
T Consensus 190 ~vi-e--~~G~-------------------------~~~~~~a~~~l~~gG~iv~vG 218 (280)
T TIGR03366 190 VAL-E--FSGA-------------------------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEE-E--CCCC-------------------------HHHHHHHHHHHHCCCEEEEEC
T ss_conf 999-8--7898-------------------------899999999860498999980
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=87.65 E-value=0.84 Score=25.69 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=41.7
Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCC-C--CCCEEEECCCC
Q ss_conf 410001059679877654432048874-17720774457743-4--47668961674
Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPK-K--LFDAVLVDAPC 316 (445)
Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~-~--~fD~iLlDaPC 316 (445)
..|++.|++++-++..+.|++|+|+.+ |.+.+.|+.++.+. . ..-.|++.+|-
T Consensus 261 ~~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPY 317 (716)
T PRK11783 261 PKFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPY 317 (716)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCH
T ss_conf 718999599899999999999819988629995678985798777898289967852
No 213
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.64 E-value=0.66 Score=26.47 Aligned_cols=98 Identities=24% Similarity=0.253 Sum_probs=61.4
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCC
Q ss_conf 2133100355644700001025684-1000105967987765443204887417720774457743---44766896167
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAP 315 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaP 315 (445)
.+|..+||..|--||=|--++++++ .|+|+|+....+.---++ .-..+..-..+++.+.++ +..|.+.+|+.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS 153 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPEDFTEKPDLIVIDVS 153 (245)
T ss_pred CCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHC----CCCEEEEECCCHHHCCHHHCCCCCCEEEEEEE
T ss_conf 89978998267876299999875874799997037743786735----98479985278311898781767784799642
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 421100110110333288667788999999999999986089828999774
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
--++ ..||.....++++||.++--.=
T Consensus 154 FISL-------------------------~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 154 FISL-------------------------KLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred HHHH-------------------------HHHHHHHHHHCCCCCEEEEEEC
T ss_conf 3319-------------------------9888999974278863899736
No 214
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=87.33 E-value=1.7 Score=23.49 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=74.0
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC--CCCCCEE
Q ss_conf 2356321331003556447000010256841-0001059679877654432048874-1772077445774--3447668
Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP--KKLFDAV 310 (445)
Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~--~~~fD~i 310 (445)
.-+.|..|..|+|+.|+.|=--..+...+++ ++.+|...==+...+.-.+=++-.- +...---..++.. .+.||.|
T Consensus 115 ~~~~pL~~~~i~DVGC~~GY~~~~M~~~Gak~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~~~pnAFD~v 194 (316)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHLWRMLGEGAKLLVGIDPTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQELKPNAFDTV 194 (316)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEE
T ss_conf 24665457778983368706889776207827874365789999999999872423557540367022232076412031
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 9616742110011011033328866778899999999999998608982899977478834399989
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
. ++|++-+ |++| |+.|..|. .-|+.+|.||--|-=|--.+|.-.|
T Consensus 195 F------s~GVLYH------RkSP--Le~L~~L~--------~~L~~~GELVL~TLviD~d~~~~Lv 239 (316)
T TIGR00452 195 F------SLGVLYH------RKSP--LEHLKQLK--------DQLVKKGELVLETLVIDGDLNTVLV 239 (316)
T ss_pred E------ECCHHHC------CCCC--HHHHHHHH--------HHHHHCCCEEEEEEEECCCCCEEEC
T ss_conf 2------2020211------5570--89999999--------9987579358653466077675864
No 215
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.19 E-value=0.83 Score=25.72 Aligned_cols=96 Identities=22% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCCCCCCEECCCCCCCCCEE-EECC-CC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC-------CCCCCC
Q ss_conf 563213310035564470000-1025-68-4100010596798776544320488741772077445-------774344
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTA-QLIV-SG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD-------YCPKKL 306 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~-~l~~-~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~-------~~~~~~ 306 (445)
...++|++||=.-|||.|=.+ +++. .+ .+|++.|.++.|++..+ ++|.. .+++....+ +.....
T Consensus 172 ~~~~~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~----~lGa~--~~i~~~~~~~~~~v~~~t~g~G 245 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGAT--HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCE--EEECCCCCCHHHHHHHHHCCCC
T ss_conf 07999988999673769999999999839918999919889999999----65990--9973998788999999858988
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 766896167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
+|.|+ | |+|. .+.++.+...+++||+++..-+
T Consensus 246 ~Dvvi-e--~~G~-------------------------~~~~~~al~~~~~gG~iv~~G~ 277 (358)
T TIGR03451 246 ADVVI-D--AVGR-------------------------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEE-E--CCCC-------------------------HHHHHHHHHHHCCCCEEEEEEC
T ss_conf 74999-9--9999-------------------------8999999997627969999922
No 216
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.03 E-value=0.89 Score=25.51 Aligned_cols=132 Identities=18% Similarity=0.096 Sum_probs=67.9
Q ss_pred CCCCCCCEECCCCCCCCCE--EEECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEEC
Q ss_conf 6321331003556447000--01025-684100010596798776544320488741772077445774-3447668961
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKT--AQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVD 313 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT--~~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlD 313 (445)
+..||+.|+=.-+| |-=. .|++. -+.+|+|+|+++.+++.. +++|...+.... |.-.... .+.||.|+.=
T Consensus 163 ~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a----~~lGAd~~i~~~-~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 163 NVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELA----KKLGADHVINSS-DSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHHCCCEEEECC-CCHHHHHHHHHCCEEEEC
T ss_conf 89999899998774-899999999998699699995787799999----984882899767-811667767347399998
Q ss_pred CCCCCC-----CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 674211-----001101103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 314 APCSST-----GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 314 aPCSg~-----Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
+| .-+ ..+|+.=.+-.-- +... ..++.--...+--+++-|+...+-...|.++..+ |.++|+
T Consensus 237 v~-~~~~~~~l~~l~~~G~~v~vG-------~~~~-~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~-f~~~g~ 303 (339)
T COG1064 237 VG-PATLEPSLKALRRGGTLVLVG-------LPGG-GPIPLLPAFLLILKEISIVGSLVGTRADLEEALD-FAAEGK 303 (339)
T ss_pred CC-HHHHHHHHHHHHCCCEEEEEC-------CCCC-CCCCCCCHHHHHHCCCEEEEEECCCHHHHHHHHH-HHHHCC
T ss_conf 77-455999999864297899978-------8887-6666678778632670899972489999999999-998189
No 217
>KOG3010 consensus
Probab=86.75 E-value=0.33 Score=28.67 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=62.6
Q ss_pred CCCC-CEECCCCCCCCCEEEECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCC-CCCCCCCEEEECCC
Q ss_conf 2133-100355644700001025-68410001059679877654432048874-17720774457-74344766896167
Q gi|254780666|r 240 LNNL-SVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDY-CPKKLFDAVLVDAP 315 (445)
Q Consensus 240 ~~g~-~VLD~CAAPGGKT~~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~-~~~~~fD~iLlDaP 315 (445)
.++. .++|+.||+| +|+...+ .--+|+|.|+|+.-|+.+++.-.-.-.+. ......+.-.+ ..++..|.|.+- -
T Consensus 31 ~~~h~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A-q 108 (261)
T KOG3010 31 TEGHRLAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA-Q 108 (261)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHH-H
T ss_conf 888645888456887-11478887543431306879999986118986204578534566565323787641211054-5
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEE---EEECCCCHHHCHHHHHHH
Q ss_conf 42110011011033328866778899999999999998608982-899---977478834399989999
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG-IVV---FSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG-~lv---YsTCSi~~eEne~vV~~f 380 (445)
| +-|- |+++ ....+.+.|++.| .+. |.+=++-.-|=..|..++
T Consensus 109 a-----------~HWF----dle~-------fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~ 155 (261)
T KOG3010 109 A-----------VHWF----DLER-------FYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRL 155 (261)
T ss_pred H-----------HHHH----CHHH-------HHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 6-----------7763----4299-------99999998077897799997247776778888999997
No 218
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.56 E-value=0.7 Score=26.26 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCCCEECCCCCCC-CCE--EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-----------CCC
Q ss_conf 1331003556447-000--01025684100010596798776544320488741772077445774-----------344
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKL 306 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT--~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-----------~~~ 306 (445)
.|+++|=.-|+.| |+. ..|++.+++|+.++.++.+++.+.+.+...| ++..+..|..+... ...
T Consensus 4 ~gK~~lVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 81 (238)
T PRK05786 4 KGKNVLIVGVSPGLGYAVAYFALREGASVYAFARSEEKLKEIKKTLAKYG--NVIYVVGDVSKLEGAREAAEKAAKVFGA 81 (238)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99889992898789999999999879999999698899999999874359--7799975789999999999999998399
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 766896167421100110110333288667788999999999999986089828999774
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
.|.++.- -|.+...|...+.--.+-+.-...-..-+...+.+.+++||.+|..+-
T Consensus 82 iD~lv~n-----aG~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~g~~ii~iss 136 (238)
T PRK05786 82 LHGLVVT-----AGGYIEDTVEELAGLEDMLNNHLKAPLYAVNASLPLLREGSSIVLVSS 136 (238)
T ss_pred CCEEEEE-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 8879980-----575678852318999999999858999999999997421677999964
No 219
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=86.43 E-value=1.7 Score=23.45 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=65.4
Q ss_pred CCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 21331003556447000010256--8410001059679877654432048874177207744577434476689616742
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCS 317 (445)
....+|+|++.|.|.=+.++++. +-+.+..|.- .-+. ++... ..++.+.+|..+..| ..|.+++
T Consensus 100 ~~~~~vvDvGGG~G~~~~~i~~~~P~l~~~v~Dlp-~v~~----~a~~~--~rv~~~~gdff~~~P--~aD~y~l----- 165 (239)
T pfam00891 100 SGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLP-HVIA----DAPSA--DRVEFVGGDFFESVP--EADAILL----- 165 (239)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECH-HHHH----HCCCC--CCEEEECCCCCCCCC--CCCEEEE-----
T ss_conf 67876899679818999999998899838986468-7786----27646--854884487777888--8517764-----
Q ss_pred CCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 110011011033328866778899999999999998608982899977478834399989
Q gi|254780666|r 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 318 g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
++ +.+..+.++ -.+||.++.+.++|||+|+=. =.+.++++..-.
T Consensus 166 -----~~---vLH~w~d~~-------~~~iL~~~~~al~~~grllI~-e~v~~~~~~~~~ 209 (239)
T pfam00891 166 -----KW---VLHDWSDED-------CVKILKRCYEALPPGGKVIVV-EMVLPEDPDDDL 209 (239)
T ss_pred -----EH---HHCCCCHHH-------HHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCCH
T ss_conf -----01---431599999-------999999999977999889999-744579998726
No 220
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=86.15 E-value=0.66 Score=26.48 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=91.1
Q ss_pred HCHHHHHCCCEECCCCCCCCCCCCC------CCCCCCEECCCCCCCCCEEEE----CCCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf 5850110010134632123222356------321331003556447000010----256841000105967987765443
Q gi|254780666|r 214 SLPGFAEGVWWVQDASASIPVQLFG------TLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEKLRCNL 283 (445)
Q Consensus 214 ~~~~f~eG~~~VQD~aSql~~~~l~------~~~g~~VLD~CAAPGGKT~~l----~~~~~~i~A~D~~~~Rl~~l~~~~ 283 (445)
..|+|.+ +-..++..++.-|. ..|+..|-|+.|.-|.-|+.+ .+..-+|+++|-|..=+++.++.+
T Consensus 32 SvP~Y~~----~~~~GayfI~~nL~E~~~~kslp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS~pM~~~~~~~~ 107 (247)
T TIGR00740 32 SVPGYSN----IINLGAYFIGMNLAERFVPKSLPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNSMPMLERCREHI 107 (247)
T ss_pred CCCHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 6832789----999889999877776543311688741223343235776653046878537988418888999999999
Q ss_pred HCCCCC-CEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 204887-4177207744577434476689616742110011011033328866778899999999999998608982899
Q gi|254780666|r 284 DRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 284 ~R~g~~-~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
+-..-. .+++.+.|.++...++.=-.+|. = +.--..|.+ -..||.+--.-|.|||.||
T Consensus 108 ~~y~~~~Pv~~~~~D~~~v~~~~AS~~~L~-F-------------~LQFl~P~~-------R~~LL~KIY~~L~~nGvL~ 166 (247)
T TIGR00740 108 KAYKNAIPVEVLCMDIREVEIKNASMVVLN-F-------------TLQFLRPEE-------REALLKKIYNGLNPNGVLV 166 (247)
T ss_pred HHHCCCCCEEEEHHHHHHHHHHHHHHHHHH-H-------------HHHCCCCHH-------HHHHHHHHHHHCCCCCEEE
T ss_conf 874247882320102456666554688788-7-------------760478234-------7999999874107786688
Q ss_pred EEECCCCHHHCHHHHHHHHH
Q ss_conf 97747883439998999999
Q gi|254780666|r 363 FSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 363 YsTCSi~~eEne~vV~~fL~ 382 (445)
-|-= +..|...+=+...+
T Consensus 167 lsEK--~~~ED~~~~~~li~ 184 (247)
T TIGR00740 167 LSEK--FMFEDRKLDKLLIE 184 (247)
T ss_pred EECC--HHHHHHHHHHHHHH
T ss_conf 6320--13667899999999
No 221
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=85.84 E-value=2.8 Score=21.76 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=76.5
Q ss_pred CCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCC--EEEEECCCCC---CCCC-CCCCEEE
Q ss_conf 133100355644700001025---68410001059679877654432048874--1772077445---7743-4476689
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFD---YCPK-KLFDAVL 311 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~--~~~~~~D~~~---~~~~-~~fD~iL 311 (445)
++..++++.||-+-||-.|+. ....-+++|||..-|+...+++.+- .+. +.-+++|..+ +.+. ....+++
T Consensus 63 ~~~~lIElGsG~~~Kt~~LL~al~~~~~Y~plDIS~~~L~~s~~~l~~~-~p~l~v~~v~~dy~~~l~~~~~~~~~~rl~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-CCCCEEEEEEECHHCHHHCCCCCCCCCCEE
T ss_conf 6764773178862378999998621563887756899999999999977-899768999633315744566557887589
Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 6167421100110110333288667788999999999999986089828999774788343999899999
Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445)
Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445)
+ =|=|..|-+.+ .+ -.++|.+..+.+.|||.|+-.+ --.-+.+++...-
T Consensus 142 ~-flGSsIGNf~~----------~e-------a~~fL~~~~~~l~~~d~lLiG~---Dl~Kd~~~l~~AY 190 (301)
T TIGR03438 142 F-FPGSTIGNFTP----------EE-------AVAFLRRIRQLLGPGGGLLIGV---DLVKDPAVLEAAY 190 (301)
T ss_pred E-ECCCCCCCCCH----------HH-------HHHHHHHHHHHHCCCCEEEEEE---CCCCCHHHHHHHH
T ss_conf 9-70754478998----------99-------9999999999719998489940---4456989999873
No 222
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=85.84 E-value=2.8 Score=21.76 Aligned_cols=106 Identities=27% Similarity=0.250 Sum_probs=64.0
Q ss_pred EECCCCCCCCCE--EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCC--CCCCEEEECCCCCC
Q ss_conf 003556447000--01025684100010596798776544320488741772077445--7743--44766896167421
Q gi|254780666|r 245 VLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPK--KLFDAVLVDAPCSS 318 (445)
Q Consensus 245 VLD~CAAPGGKT--~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~--~~~~--~~fD~iLlDaPCSg 318 (445)
++|.++|.|.-+ ..+......++++|++...+........+.+...+.....|... .... ..||.+.....+..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 131 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL 131 (257)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCHHHH
T ss_conf 58860385468999997357857999368889999999863004566357676042135567566665778986123443
Q ss_pred CCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHC
Q ss_conf 1001101103332886677889999999999999860898289997747883439
Q gi|254780666|r 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 (445)
Q Consensus 319 ~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEn 373 (445)
. . ....+......++++|.++.++........
T Consensus 132 ~-------------~----------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (257)
T COG0500 132 L-------------P----------PAKALRELLRVLKPGGRLVLSDLLRDGLLE 163 (257)
T ss_pred H-------------H----------HHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 0-------------2----------899999999870788689999624444321
No 223
>KOG3191 consensus
Probab=85.83 E-value=0.6 Score=26.75 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCCEECCCCCCCCCEEEECCC---CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCC-
Q ss_conf 331003556447000010256---8410001059679877654432048874177207744577434476689616742-
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS- 317 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~---~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCS- 317 (445)
.+.+++..||.|-=|+.|++. +....|.|++++.++...+.++..+.+ +++++.|...--..++.|.++..+|--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CCEEEHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 605899348846599999974177716999549989998879999855775-2056525776633277308997899676
Q ss_pred ----CCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf ----11001101103332886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 318 ----STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 318 ----g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
-.| -++-+..|---...- ..--++|...-.+|.|-|..--.+|.=+.- ++++ ++|++..
T Consensus 123 t~~~~i~--~~~i~~a~aGG~~Gr----~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~-k~l~~~g 185 (209)
T KOG3191 123 TSDEEIG--DEGIASAWAGGKDGR----EVTDRLLPQVPDILSPRGVFYLVALRANKP--KEIL-KILEKKG 185 (209)
T ss_pred CCCCCCH--HHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCCCCEEEEEEHHHCCH--HHHH-HHHHHCC
T ss_conf 9854420--677888874575417----899988764044428674377630130597--9999-9874336
No 224
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=84.36 E-value=1.8 Score=23.18 Aligned_cols=99 Identities=25% Similarity=0.268 Sum_probs=57.6
Q ss_pred CCCCCEECCCCCCCCCE-EEECCC-CC-CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCC----CCCCCCCCCEEE
Q ss_conf 21331003556447000-010256-84-10001059679877654432048874-177207744----577434476689
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKT-AQLIVS-GA-KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAF----DYCPKKLFDAVL 311 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT-~~l~~~-~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~----~~~~~~~fD~iL 311 (445)
..|++||=.-|||-|=. ++++.. ++ .|+++|.++.|++.++ ++|... +.....|.. ++.....||.|+
T Consensus 162 ~~g~~VlV~GaG~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~----~lGa~~~i~~~~~~~~~~~~~~t~~~G~Dvvi 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR----KMGATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHH----HCCCCEEEECCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 78886999899754329999999849928999948999999898----64994999688506899999974899976999
Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 6167421100110110333288667788999999999999986089828999774788343
Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 (445)
Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE 372 (445)
| |+|++.. ++.+.+++++||+++.. .+...+
T Consensus 238 -d--~~G~~~~-------------------------~~~~~~~l~~gG~vv~~--G~~~~~ 268 (341)
T PRK05396 238 -E--MSGAPSA-------------------------FRQMLDAMNHGGRIAML--GIPPGD 268 (341)
T ss_pred -E--CCCCHHH-------------------------HHHHHHHHHCCCEEEEE--ECCCCC
T ss_conf -8--7898999-------------------------99999986359899999--557998
No 225
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=84.09 E-value=3.4 Score=21.21 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=83.0
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC-----CCCCCCCCEEEECCCCCCCCHHHCCCHHHHCC
Q ss_conf 1025684100010596798776544320488741772077445-----77434476689616742110011011033328
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~-----~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~ 332 (445)
++.-.+-++.++|.++.-...++.|+. +-.++.+...|+.. +.++++=-.||+|+| --
T Consensus 105 ~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP---------------fE 167 (279)
T COG2961 105 QLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP---------------FE 167 (279)
T ss_pred HHCCHHCEEEEEECCCCHHHHHHHHHC--CCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCC---------------CC
T ss_conf 871401003320048457999997627--7841478834718888621899776258995898---------------66
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC-E-EECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8667788999999999999986089828999774788343999899999968874-1-7813763233556643455868
Q gi|254780666|r 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-V-ELVPLNSAYWKSIDMAMALSPE 410 (445)
Q Consensus 333 ~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 410 (445)
.+.|..++++.=. .+.+....|-+. =..|.-.-.++++|++.-... + ...- -.....+.....+.+..
T Consensus 168 ~~~eY~rvv~~l~----~~~kRf~~g~ya-----iWYPik~r~~~~~f~~~L~~~~i~kiL~-iEL~VrP~~d~~gm~gS 237 (279)
T COG2961 168 LKDEYQRVVEALA----EAYKRFATGTYA-----IWYPIKDRRQIRRFLRALEALGIRKILQ-IELAVRPDSDPRGMNGS 237 (279)
T ss_pred CCCHHHHHHHHHH----HHHHHHCCCEEE-----EEEEECCHHHHHHHHHHHHHCCCCCEEE-EEEEECCCCCCCCCCCE
T ss_conf 6217999999999----999862486599-----9976003489999999976348512104-67786279887786633
Q ss_pred CEEEECCC
Q ss_conf 80898876
Q gi|254780666|r 411 GWIRITPD 418 (445)
Q Consensus 411 g~~r~~P~ 418 (445)
|++=+.|-
T Consensus 238 GMivINPP 245 (279)
T COG2961 238 GMIVINPP 245 (279)
T ss_pred EEEEECCC
T ss_conf 58997799
No 226
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=84.01 E-value=2.8 Score=21.85 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=63.6
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCE
Q ss_conf 1331003556447-0000--10256841000105967987765443204887417720774457743--------44766
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDA 309 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~ 309 (445)
.|+.+|=--|+.| |+.+ .|++.++.|+.+|.+..+++.+.+.++..|.+. ..+..|.++...- ++|..
T Consensus 10 ~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~-~~~~~Dv~~~~~~~~~v~~~~~~~G~ 88 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQA-FACRCDITSEQELSALADFAVSKLGK 88 (255)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEE-EEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99989995887789999999999879999999698899999999999659908-99983689999999999999998199
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH----HHHHHHHHHHHCCC--CCEEEEEE
Q ss_conf 8961674211001101103332886677889999----99999999986089--82899977
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF----QRKLLLQGISFVKP--GGIVVFSN 365 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~----Q~~iL~~a~~~lk~--gG~lvYsT 365 (445)
+|.=+.+.|.-...| +..+.++..+.-.+ -..+...+.+.++. ||.+|..+
T Consensus 89 --iDilVnNAG~~~~~~---~d~~~~~~~~~~~~Nl~~~~~~~~~~~p~m~~~~~G~IInis 145 (255)
T PRK06113 89 --VDILVNNAGGGGPKP---FDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTIT 145 (255)
T ss_pred --CCEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf --889998788789987---759999999999996499999999999988871896799984
No 227
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=83.96 E-value=0.8 Score=25.83 Aligned_cols=121 Identities=23% Similarity=0.308 Sum_probs=78.0
Q ss_pred CCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCCCCCEEEECC
Q ss_conf 6321331003556447000010256841000105967987765443204887417720774457---7434476689616
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY---CPKKLFDAVLVDA 314 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~---~~~~~fD~iLlDa 314 (445)
+..+-.++||+.||-|----.|-..-.+++.+|+|++=+++..+. |+.+ ...++|+..+ ...++||.|.
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~~~~er~DLi~--- 193 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLEDLTQERFDLIV--- 193 (287)
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHC----CCHH-HHHHHHHHHHHHHCCCCCCCCHH---
T ss_conf 577620234426676766276788886512776269999998862----4157-88898999875522677643012---
Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------------CHHHHHHHHH
Q ss_conf 7421100110110333288667788999999999999986089828999774788343------------9998999999
Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD------------SEEVVQKVLR 382 (445)
Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE------------ne~vV~~fL~ 382 (445)
..|+--+..-=..++--++.+|+|||.+.+|.=++-.+- .|.-|...|+
T Consensus 194 -------------------AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~ 254 (287)
T COG4976 194 -------------------AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLA 254 (287)
T ss_pred -------------------HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCHHHHHCCCHHHHHHHHH
T ss_conf -------------------4567886400346899999855898648987231677787321646532252289999997
Q ss_pred HCC
Q ss_conf 688
Q gi|254780666|r 383 SSP 385 (445)
Q Consensus 383 ~~~ 385 (445)
.+.
T Consensus 255 ~~G 257 (287)
T COG4976 255 ASG 257 (287)
T ss_pred HCC
T ss_conf 459
No 228
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.79 E-value=1 Score=25.11 Aligned_cols=99 Identities=22% Similarity=0.162 Sum_probs=62.1
Q ss_pred CCCCCCCEECCCCCCCCCE-EEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-CC----CCCCCCCCCCE
Q ss_conf 6321331003556447000-010256--8410001059679877654432048874177207-74----45774344766
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKT-AQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DA----FDYCPKKLFDA 309 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT-~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D~----~~~~~~~~fD~ 309 (445)
...++.+|+=++|||=|=- .+++.. -.+|+++|+++.|++..++.. |...+..... |. ........||.
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC---CCCEEECCCCHHHHHHHHHHCCCCCCCE
T ss_conf 5788998999888899999999998769827999799989999999877---9718724630147889998608987999
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 8961674211001101103332886677889999999999999860898289997747
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
|+ =|||+.. .+..+..++++||.+++.-=+
T Consensus 242 vi---e~~G~~~-------------------------~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 242 VI---EAVGSPP-------------------------ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EE---ECCCCHH-------------------------HHHHHHHHCCCCCEEEEEECC
T ss_conf 99---9989979-------------------------999999960259899999515
No 229
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=82.24 E-value=1.6 Score=23.57 Aligned_cols=92 Identities=26% Similarity=0.267 Sum_probs=52.9
Q ss_pred CCCCCCCEECC-CCCCCCC-EEEECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC-------CCCCCCC
Q ss_conf 63213310035-5644700-001025-684100010596798776544320488741772077445-------7743447
Q gi|254780666|r 238 GTLNNLSVLDL-CAAPGGK-TAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD-------YCPKKLF 307 (445)
Q Consensus 238 ~~~~g~~VLD~-CAAPGGK-T~~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~-------~~~~~~f 307 (445)
..++|++||=. .+|+=|- ..|++. .+.+|++...++.+.+.+ +.+|+....++.....+ ......|
T Consensus 101 ~i~~g~~VlI~gg~G~vG~~aiqlak~~Ga~Vi~t~~s~~k~~~~----~~lG~~~~~v~~~~~~~~~~~v~~~t~g~gv 176 (288)
T smart00829 101 RLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFL----RELGIPDDHIFSSRDLSFADEILRATGGRGV 176 (288)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH----HHCCCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 889999999978986777999999997398300340888999999----9769996076217995099999987089882
Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 6689616742110011011033328866778899999999999998608982899
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
|.|+ |. .| | +.+..+.++|+++|++|
T Consensus 177 Dvv~-d~--vg-g-------------------------~~~~~~~~~l~~~G~~v 202 (288)
T smart00829 177 DVVL-NS--LA-G-------------------------EFLDASLRCLAPGGRFV 202 (288)
T ss_pred EEEE-EC--CC-H-------------------------HHHHHHHHHHCCCCEEE
T ss_conf 7999-89--86-8-------------------------99999999753698899
No 230
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=81.74 E-value=3.5 Score=21.05 Aligned_cols=111 Identities=20% Similarity=0.154 Sum_probs=65.3
Q ss_pred CCEECCCCCCCCCEEE--ECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCC-----------------------------
Q ss_conf 3100355644700001--02568--41000105967987765443204887-----------------------------
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQ--LIVSG--AKVTALDVSKRRLEKLRCNLDRLHLY----------------------------- 289 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~--l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~----------------------------- 289 (445)
-+++|-|||.|.=-+- |+..+ ..++|.|+++.-++...+|+.=+...
T Consensus 53 ~tlwDpCCG~gYlLTvlgLLhr~~i~~v~aSDVd~~al~LA~~NL~LLt~~GL~~R~~eL~e~~~~f~k~s~~~aa~aA~ 132 (249)
T pfam11599 53 ISLWDCCCGGAYLLSILGLLHRNSIANLIASDIDPAPIELAADNLALLSKAGINAREDELKALSERFGKASHIDAAHAAD 132 (249)
T ss_pred CCEEECCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 30330577711899999985315787777425887899999864544032016778999999999848825788998889
Q ss_pred -------------CEEEEECCCCCCCCC------CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf -------------417720774457743------4476689616742110011011033328866778899999999999
Q gi|254780666|r 290 -------------AEDIIEMDAFDYCPK------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 (445)
Q Consensus 290 -------------~~~~~~~D~~~~~~~------~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~ 350 (445)
...+..+|.++.... ...|.|+-|.|---.-.|.-. ....-+ .++|+.
T Consensus 133 Rl~~~l~a~gg~~p~~~~~ADvfdp~~l~~~~~g~~pDiVvTDlPYGe~t~Weg~------~~~~~v-------~g~l~~ 199 (249)
T pfam11599 133 RIEELLTAEGGALPCAIKTADLFDGNALEACDAGFAPDIIITDLPYGEMTEWEEQ------VGAGGI-------AGLLNA 199 (249)
T ss_pred HHHHHHHCCCCCCCCHHHEECCCCCCHHHHHHCCCCCCEEEECCCCCCEEEECCC------CCCCCH-------HHHHHH
T ss_conf 9999986038998612100023586036777437888868843787740022377------899767-------899999
Q ss_pred HHHHCCCCCEEEEEEC
Q ss_conf 9986089828999774
Q gi|254780666|r 351 GISFVKPGGIVVFSNC 366 (445)
Q Consensus 351 a~~~lk~gG~lvYsTC 366 (445)
-...+.+++.++-+|=
T Consensus 200 l~~vlp~~aVv~V~~~ 215 (249)
T pfam11599 200 LAAACGADAIIAVCMD 215 (249)
T ss_pred HHHHCCCCEEEEEEEC
T ss_conf 9865799808999816
No 231
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=81.51 E-value=2.3 Score=22.42 Aligned_cols=107 Identities=18% Similarity=0.288 Sum_probs=63.7
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCC---CCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHH
Q ss_conf 10001059679877654432048874-17720774457---743447668961674211001101103332886677889
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~---~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l 340 (445)
+|+|.||-+..+...+++++..|+.+ +.++..+-..+ -+...+|.++ =++|=+-.- | +.+--.
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~-----FNLGYLPgg-D-------k~i~T~ 67 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAI-----FNLGYLPGG-D-------KSITTK 67 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEE-----EECCCCCCC-C-------CCCEEC
T ss_conf 957996099999999999996598756899977988898637646766899-----966768899-9-------875877
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECC---CCHHHCHHHHHHHHHHCC
Q ss_conf 999999999999860898289997747---883439998999999688
Q gi|254780666|r 341 ACFQRKLLLQGISFVKPGGIVVFSNCS---LDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 341 ~~~Q~~iL~~a~~~lk~gG~lvYsTCS---i~~eEne~vV~~fL~~~~ 385 (445)
...-.+-|+++..+|+|||+|+-..-+ ==.+|.+.|. .|++.=|
T Consensus 68 ~~tTi~Al~~al~lL~~gG~i~i~~Y~GH~gG~eE~~aV~-~~~~~L~ 114 (140)
T pfam06962 68 PDTTLEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDAVL-DFVSNLD 114 (140)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHH-HHHHHCC
T ss_conf 7209999999999636698999999799998799999999-9998489
No 232
>KOG1500 consensus
Probab=81.01 E-value=3.5 Score=21.06 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=34.0
Q ss_pred CCCCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHH---HHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 3213310035564470000102568-41000105967---98776544320488-7417720774457743447668961
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKR---RLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDAVLVD 313 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~---Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~~~~fD~iLlD 313 (445)
...+..|||+.||.|--|.--+..+ .+|+|+|-|+- .-+.+..| .+ +-|.++.+...+....++.|.|+-.
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N----~~~~rItVI~GKiEdieLPEk~DviISE 250 (517)
T KOG1500 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASN----NLADRITVIPGKIEDIELPEKVDVIISE 250 (517)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCC----CCCCEEEECCCCCCEECCCCCCCEEEEC
T ss_conf 457748998158824899999873865389874567999999987436----6320378705632010375103478725
No 233
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.70 E-value=4.4 Score=20.32 Aligned_cols=37 Identities=19% Similarity=0.435 Sum_probs=16.5
Q ss_pred CCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCC
Q ss_conf 61110456785558501100101346321232223563
Q gi|254780666|r 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 (445)
Q Consensus 202 ~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~ 239 (445)
++++....-...+||.|..+.-+ .+...+-+..+.+|
T Consensus 178 gI~Vt~V~Pg~v~TP~~~~~~~~-~~~~~~~~~p~~~p 214 (324)
T PRK06139 178 DIHVCDVYPAFVDTPGFRHGANY-TGRRLTPPPPMYDP 214 (324)
T ss_pred CCEEEEEECCCCCCCCCHHHHHC-CCCCCCCCCCCCCH
T ss_conf 91899985799588520143533-78788999998799
No 234
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=80.42 E-value=3.4 Score=21.14 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=75.4
Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCC--CHHHHHCCHHHHHHHHHHHHCCCCCCEE-EEECCCCCCC------CCCCCCE
Q ss_conf 32133100355644700001025684--1000105967987765443204887417-7207744577------4344766
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDYC------PKKLFDA 309 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~--~i~A~D~~~~Rl~~l~~~~~R~g~~~~~-~~~~D~~~~~------~~~~fD~ 309 (445)
|..|.+||...+|-|--..+++..-. .=...|+++.++..+...++..|+.|+. .+.-|+.... ....||.
T Consensus 23 ~~~~~~VLEIaSGTGQHav~fA~~lP~l~WqPSD~~~~~~~sI~aw~~~~~l~Nl~~P~~LDv~~~~w~~~~~~~~~~da 102 (201)
T pfam06080 23 AKTTERVLEIASGTGQHAVFFAPLLPNLTWQPSDPDPNLRGSIAAWADQQGLRNLRPPLHLDVTRPPWPVEAPAPASYDA 102 (201)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCH
T ss_conf 74788579976872699999998789988515888877899999998743777668873763278998755566766002
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEECC----CCHHHCHHHHHHHHHH
Q ss_conf 89616742110011011033328866778899999999999998608982899-97747----8834399989999996
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCS----LDKQDSEEVVQKVLRS 383 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-YsTCS----i~~eEne~vV~~fL~~ 383 (445)
|+. ..+= ...+- ..=..+...|.+.|++||.|+ |---. ++.+-|++- +.-|+.
T Consensus 103 i~~----iN~l----------HI~pw------~~~~~lf~ga~~~L~~gG~l~lYGPF~~~G~~ts~SN~~F-D~~Lr~ 160 (201)
T pfam06080 103 IFS----INMI----------HISPW------SCVEGLFRGAGRLLPPGGVLYIYGPYNQDGELTSDSNRDF-DRSLRQ 160 (201)
T ss_pred HHH----HHHH----------HHCCH------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHH-HHHHHH
T ss_conf 330----0257----------73789------9999999999998515882687465025997688258999-999985
No 235
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.89 E-value=4.7 Score=20.14 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=57.7
Q ss_pred CCCEECCCCCCC-CCE--EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----------CCCCC
Q ss_conf 331003556447-000--01025684100010596798776544320488741772077445774----------34476
Q gi|254780666|r 242 NLSVLDLCAAPG-GKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----------KKLFD 308 (445)
Q Consensus 242 g~~VLD~CAAPG-GKT--~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----------~~~fD 308 (445)
|+.+|=--|+.| |+. .+|++.++.|+.+|.++.+++...+.+...+-..+..+..|..+... ....|
T Consensus 8 gK~alITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~~d 87 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVIILSRNEENLKRAKEKIKSESDVEVHYIVADLTKREDLERTVKELKNIGDPD 87 (263)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99899916260999999999998699999997988999999999985049857999848999999999999999569998
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHH----HHHHHHHHHHHHCCC--CCEEEEEE
Q ss_conf 6896167421100110110333288667788999----999999999986089--82899977
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC----FQRKLLLQGISFVKP--GGIVVFSN 365 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~----~Q~~iL~~a~~~lk~--gG~lvYsT 365 (445)
.++.-|-....|. .+..++++..+... --.-+.+.+.+.++. +|++|..+
T Consensus 88 ilv~nag~~~~~~-------~~~~~~e~w~~~~~vnl~~~~~~~~~~~p~m~~~~~G~II~is 143 (263)
T PRK08339 88 IFFFSTGGPKPGY-------FMEMSMEDWEEAVKLLLYPAVYLTRALVPGMERKGFGRIIYST 143 (263)
T ss_pred EEEECCCCCCCCC-------HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9998999999989-------1559999999999998699999999998765243896399955
No 236
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=79.64 E-value=1.1 Score=24.69 Aligned_cols=29 Identities=34% Similarity=0.660 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 999999998608982899977478834399989999
Q gi|254780666|r 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 345 ~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445)
..||-..=+.|.|||.+|-- ++.+++.++
T Consensus 447 ~dillEMDRILRP~G~vIiR-------D~~~vl~~v 475 (506)
T pfam03141 447 EDILLEMDRILRPGGAVIIR-------DDVDVLDKV 475 (506)
T ss_pred HHHHHHHHHHCCCCCEEEEE-------CCHHHHHHH
T ss_conf 99998887600688149994-------679999999
No 237
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.09 E-value=2.7 Score=21.91 Aligned_cols=130 Identities=17% Similarity=0.091 Sum_probs=67.7
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCE
Q ss_conf 1331003556447-0000--10256841000105967987765443204887417720774457743--------44766
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDA 309 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~ 309 (445)
.|+.+|=.-|+.| |+.+ .+++.+++|+.+|.+..+++.+.+.++..|.. ...+..|..+...- +.|.+
T Consensus 8 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~-~~~~~~Dv~~~~~v~~~v~~~~~~~G~ 86 (258)
T PRK06949 8 EGKVALVTGASSGLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAEGGA-AHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9998999585779999999999987999999969889999999999965992-899982689999999999999998499
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHH----HHHHHHHHH----------CCCCCEEEEE--ECCCCHHHC
Q ss_conf 896167421100110110333288667788999999----999999986----------0898289997--747883439
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR----KLLLQGISF----------VKPGGIVVFS--NCSLDKQDS 373 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~----~iL~~a~~~----------lk~gG~lvYs--TCSi~~eEn 373 (445)
|=+=+-|.| +....| ....++++.++...+-. -+-..+.+. -+++|++|.. .+++.+..+
T Consensus 87 iDiLVnnAG--~~~~~~--~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~mi~~~~~~~~~~~~G~IVni~S~~~~~~~~~ 162 (258)
T PRK06949 87 IDILVNNSG--VSTTQK--LVDVTPADFEFVFDTNTRGAFFVAQEVAKRMIARAKGAGNAKPQCRIINIASVAGLRVLPQ 162 (258)
T ss_pred CCEEEECCC--CCCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHCCCCCC
T ss_conf 989998998--899989--2659999999999987099999999999999984579988889839999835554768998
Q ss_pred HH
Q ss_conf 99
Q gi|254780666|r 374 EE 375 (445)
Q Consensus 374 e~ 375 (445)
..
T Consensus 163 ~~ 164 (258)
T PRK06949 163 IG 164 (258)
T ss_pred CH
T ss_conf 38
No 238
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.89 E-value=1.4 Score=23.98 Aligned_cols=127 Identities=21% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCEE
Q ss_conf 331003556447-0000--10256841000105967987765443204887417720774457743--------447668
Q gi|254780666|r 242 NLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDAV 310 (445)
Q Consensus 242 g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~i 310 (445)
|+.++=--||-| |+.+ ++++.+.+|+..|++..+++...+.+...|.. +..+..|.++...- ..|..
T Consensus 6 gKvavITGaasGIG~a~A~~la~~Ga~Vvi~d~~~~~l~~~~~~l~~~g~~-~~~~~~Dvt~~~~v~~l~~~~~~~~G~- 83 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFD-VHGVMCDVRHREEVTHLADEAFRLLGH- 83 (275)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHHHCC-
T ss_conf 987999282669999999999987998999979889999999999826984-799978889999999999999998489-
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHH----HHHHHHHHH-HCC--CCCEEEE--EECCCCHHHC
Q ss_conf 9616742110011011033328866778899999----999999998-608--9828999--7747883439
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ----RKLLLQGIS-FVK--PGGIVVF--SNCSLDKQDS 373 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q----~~iL~~a~~-~lk--~gG~lvY--sTCSi~~eEn 373 (445)
+|.=|+.-|+....| .|..+.++......+- .-+...+.+ +++ .||.+|. |+.++.+.-+
T Consensus 84 -iDilvnNAGi~~~~~--~~~~~~~~w~~~~~vNl~g~~~~~~~~lP~m~~~g~~G~IvntsS~agl~~~~~ 152 (275)
T PRK05876 84 -VDVVFSNAGIVVGGP--IVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAG 152 (275)
T ss_pred -CCEEECCCCCCCCCC--CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC
T ss_conf -885121574468987--232999999998764138999999999999998199949999686775389999
No 239
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=78.53 E-value=5.1 Score=19.85 Aligned_cols=108 Identities=22% Similarity=0.231 Sum_probs=61.4
Q ss_pred CCCEEEEC-------CCC--CCHHHHHC-CHHHHHHHHHHHHCCCCCCEEEEECCCCCC----------CCCCCCCEEEE
Q ss_conf 70000102-------568--41000105-967987765443204887417720774457----------74344766896
Q gi|254780666|r 253 GGKTAQLI-------VSG--AKVTALDV-SKRRLEKLRCNLDRLHLYAEDIIEMDAFDY----------CPKKLFDAVLV 312 (445)
Q Consensus 253 GGKT~~l~-------~~~--~~i~A~D~-~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~----------~~~~~fD~iLl 312 (445)
-|||+-++ ..+ --+++.|- ...-.+.|+...+++|+.-... .+..++ .....+|.||+
T Consensus 11 vGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~IlI 88 (173)
T cd03115 11 VGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEE--GEGKDPVSIAKRAIEHAREENFDVVIV 88 (173)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 988999999999999769928999748875779999999999749859922--775587999999999987568998999
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 16742110011011033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
|-| .|+ ..++..+.++.++... .+|. ..+..-.+...+|-.+++..|-+.
T Consensus 89 DTa-------Gr~-----~~d~~~~~el~~l~~~--------~~p~-~~~LVl~a~~~~~~~~~~~~f~~~ 138 (173)
T cd03115 89 DTA-------GRL-----QIDENLMEELKKIKRV--------VKPD-EVLLVVDAMTGQDAVNQAKAFNEA 138 (173)
T ss_pred ECC-------CCC-----CCCHHHHHHHHHHHHH--------HCCC-CCEEECCCCCHHHHHHHHHHHHHC
T ss_conf 788-------878-----7999999999999864--------4897-215742465506589999998742
No 240
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=78.13 E-value=2.3 Score=22.46 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=46.7
Q ss_pred EEECCCCC--CHHHHHCCHHHHHHHHHHHHCCCCCCE-EEEECCCC----CCCCCCCCCEEEECCCCCCCCHHHCCCHHH
Q ss_conf 01025684--100010596798776544320488741-77207744----577434476689616742110011011033
Q gi|254780666|r 257 AQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAF----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 (445)
Q Consensus 257 ~~l~~~~~--~i~A~D~~~~Rl~~l~~~~~R~g~~~~-~~~~~D~~----~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~ 329 (445)
.+++...| +|++.|.++.|++.++ ++|.+.+ .....|.. .......||.|+ -|+|.+
T Consensus 7 iq~ak~~Ga~~Vi~~~~~~~r~~~a~----~lGa~~~i~~~~~~~~~~i~~~~~~~g~d~vi---d~~g~~--------- 70 (131)
T pfam00107 7 VQLAKALGAARVIAVDRSEEKLELAK----ELGADHVINYRDEDFVERVRELTGGRGVDVVI---DCVGAP--------- 70 (131)
T ss_pred HHHHHHCCCCEEEEEECCHHHHHHHH----HCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEE---ECCCCH---------
T ss_conf 99999849987999969889999999----75997323533221245565404997764988---668866---------
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCC
Q ss_conf 3288667788999999999999986089828999-77478
Q gi|254780666|r 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF-SNCSL 368 (445)
Q Consensus 330 w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY-sTCSi 368 (445)
..++.+.+++++||+++. ..++-
T Consensus 71 ----------------~~~~~~~~~~~~~G~iv~~G~~~~ 94 (131)
T pfam00107 71 ----------------ATLEQALELLRPGGRVVVVGLPGG 94 (131)
T ss_pred ----------------HHHHHHHHHHCCCCEEEEEECCCC
T ss_conf ----------------679999875359978999946789
No 241
>PRK09422 alcohol dehydrogenase; Provisional
Probab=78.07 E-value=1.6 Score=23.56 Aligned_cols=94 Identities=21% Similarity=0.131 Sum_probs=56.6
Q ss_pred CCCCCCCCEECCCCCCCCCE-EEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC---C-CCCC--CCCCCC
Q ss_conf 56321331003556447000-01025--68410001059679877654432048874177207---7-4457--743447
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKT-AQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM---D-AFDY--CPKKLF 307 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT-~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~---D-~~~~--~~~~~f 307 (445)
...++|++||=.-||+.|-. .+++. .+.+|++.|.++.|++.+ +++|.+. +++. | .... ...+.+
T Consensus 158 ~~~~~G~~VlV~GaGgvG~~aiq~ak~~~g~~Vi~~~~~~~k~~~a----~~lGad~--vi~~~~~~~~~~~~~~~~gg~ 231 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALA----KEVGADL--TINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHCCCCE--EECCCCCCCHHHHHHHHCCCC
T ss_conf 4899998899968868999999999980898699998999999999----9729989--981887434999999950997
Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 668961674211001101103332886677889999999999999860898289997
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
|.+++|+. . . .-+..+.++|++||+++..
T Consensus 232 ~~~v~~~~---~--------------~-----------~~~~~~~~~l~~gG~~v~v 260 (338)
T PRK09422 232 HAAVVTAV---A--------------K-----------AAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred CEEEEECC---C--------------H-----------HHHHHHHHHHHCCCEEEEE
T ss_conf 76999678---7--------------8-----------9999999981169999998
No 242
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=77.77 E-value=5.4 Score=19.70 Aligned_cols=122 Identities=19% Similarity=0.211 Sum_probs=65.0
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCE
Q ss_conf 1331003556447-0000--10256841000105967987765443204887417720774457743--------44766
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDA 309 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~ 309 (445)
.|+.+|=.-|+.| |+.+ +|++.+..|+.+|.++.+++.+.+.++..|. ++..+..|..+...- +.|..
T Consensus 5 ~gK~alITGgs~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (253)
T PRK12826 5 MGRVALVTGAARGIGRAIAVRFAADGADVIVVDICGQAAAATAELVAAAGG-KARAYQVDVRDRAALKALVAAGVERFGR 83 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC-CEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 998899948977899999999998799899998988999999999985099-5899995179999999999999998399
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH----HHHHHHHHHHHCC--CCCEEEEEECCC
Q ss_conf 8961674211001101103332886677889999----9999999998608--982899977478
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF----QRKLLLQGISFVK--PGGIVVFSNCSL 368 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~----Q~~iL~~a~~~lk--~gG~lvYsTCSi 368 (445)
+|.=+..-|.....| .+..+.++..+...+ -.-+...+++.++ .+|.+|..+ |+
T Consensus 84 --iD~lvnnAg~~~~~~--~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is-S~ 143 (253)
T PRK12826 84 --LDILVANAGIFPLTP--FAELDDEDWDRVIDVNLTGTFLLTQAALPALKRAGGGRIVLTS-SV 143 (253)
T ss_pred --CCEEEECCCCCCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-CH
T ss_conf --878998998899998--1559999999999987566643378746999976997699995-25
No 243
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=77.61 E-value=3.5 Score=21.11 Aligned_cols=141 Identities=15% Similarity=0.212 Sum_probs=87.5
Q ss_pred CCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCC-CCCC-EEEEE-CCCCC-----CCCCCCCCEE
Q ss_conf 1331003556447000010--256841000105967987765443204-8874-17720-77445-----7743447668
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL-HLYA-EDIIE-MDAFD-----YCPKKLFDAV 310 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~-g~~~-~~~~~-~D~~~-----~~~~~~fD~i 310 (445)
.+-++||.+.|.-.==-.| ...+.+.+|.|+++.-++-.++|+++. ++.. |++.. .+... ..+.+.||..
T Consensus 65 ~~v~gLDIGtGAscIYPLLg~~~y~W~fvgtDId~~sl~~A~~nv~~N~~L~~~I~l~~q~~~~~if~gii~~~e~fdft 144 (254)
T pfam05971 65 TLRRALDIGTGANCIYPLLGVTEYGWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQPQSTLIFNGLIGENERYDFT 144 (254)
T ss_pred CCCEEEEECCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 77467773366415777540400486379762798999999999985833231169996378110223446876606663
Q ss_pred EECCCCCCC------CHHHC----CCHHHHCCCHHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHH
Q ss_conf 961674211------00110----1103332886677----889999999999999860898289997747883439998
Q gi|254780666|r 311 LVDAPCSST------GTIRR----HPDVLWTRDTDDI----VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 (445)
Q Consensus 311 LlDaPCSg~------Gt~rr----~Pd~~w~~~~~~l----~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~v 376 (445)
++-+|==.+ |+-|+ +|..-..-....+ -+. ..=..|++.+..+-+ ++..=||=+-+.+|-.-
T Consensus 145 mCNPPF~~S~~ea~~~~~rk~~~~~p~~~f~G~~~El~~~GGE~-~Fi~rMI~ES~~~~~---~v~WfTsmvgKks~l~~ 220 (254)
T pfam05971 145 LCNPPFHASLAEAKGGSSRKPGRPPPSLNFGGQIAELWCEGGEA-AFIKKMIEESLQFAK---QVRWFTTLVSKGCNLPP 220 (254)
T ss_pred ECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHH-HHHHHHHHHHHHHCC---CCEEECCCCCCCCCHHH
T ss_conf 03798667888887776446678997303567530667468459-999999999998644---75798313666214999
Q ss_pred HHHHHHHCC
Q ss_conf 999999688
Q gi|254780666|r 377 VQKVLRSSP 385 (445)
Q Consensus 377 V~~fL~~~~ 385 (445)
+.+.|++..
T Consensus 221 l~~~L~~~~ 229 (254)
T pfam05971 221 LKEELRILG 229 (254)
T ss_pred HHHHHHHCC
T ss_conf 999999769
No 244
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=77.53 E-value=1.3 Score=24.31 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=43.3
Q ss_pred CEECCCCCCCCCEEEECC---C-CCCHHHHHCCHHHHHHHHHHHHCCCCCC--EEEEE
Q ss_conf 100355644700001025---6-8410001059679877654432048874--17720
Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIV---S-GAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295 (445)
Q Consensus 244 ~VLD~CAAPGGKT~~l~~---~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~--~~~~~ 295 (445)
.|+|++|.=|.-|..++. . .++|+|.|..+.-.+.+++|++-.++.+ +.+.+
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~~~~v~afEP~p~~~~~l~~n~~~n~~~~~~~~~~~ 58 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEGGGRVIAFEPLPDAYEILEENVKLNGLPNKEVKLLN 58 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 9787017704799999974178873189986895799999986203787873289973
No 245
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=76.75 E-value=1.7 Score=23.32 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=65.7
Q ss_pred CCCCCCCCEECCCCCCCCCEEE---ECCCCCCHHHHHCCHHHHHHHHHHH------------HCCCCCCEEEEECCCCCC
Q ss_conf 5632133100355644700001---0256841000105967987765443------------204887417720774457
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL------------DRLHLYAEDIIEMDAFDY 301 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~---l~~~~~~i~A~D~~~~Rl~~l~~~~------------~R~g~~~~~~~~~D~~~~ 301 (445)
|+..++.+|+=--| |||.- |++.+-.|+++|+|+..++.+-+.. .+....++.+.++|..++
T Consensus 33 L~~~~~~rVlVPlC---GKs~Dm~wLa~~G~~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i~i~~gDfF~L 109 (218)
T PRK13255 33 LALPAGSRVLVPLC---GKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEISLYCGDFFAL 109 (218)
T ss_pred CCCCCCCEEEEECC---CCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCCC
T ss_conf 08788986999489---867769999848972699835299999999973898630136760377538827996642027
Q ss_pred CCC--CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 743--44766896167421100110110333288667788999999999999986089828999774788343
Q gi|254780666|r 302 CPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 (445)
Q Consensus 302 ~~~--~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE 372 (445)
.+. +.||.|.==|---++ +|+.| .+=..+...+++|||+.+-.|-...+++
T Consensus 110 ~~~~~g~~DaIyDRaal~AL-----pp~~R---------------~~Y~~~l~~ll~~g~~~LLitl~Y~q~~ 162 (218)
T PRK13255 110 TAADLADVDAVYDRAALIAL-----PEEMR---------------ERYVQQLAALLPAGCRGLLVTLDYPQEE 162 (218)
T ss_pred CHHHCCCCCEEEECCCEECC-----CHHHH---------------HHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 86354774889975380128-----98999---------------9999999986499874899998627655
No 246
>PRK08643 acetoin reductase; Validated
Probab=76.16 E-value=5.2 Score=19.82 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=13.0
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 25684100010596798776544320488
Q gi|254780666|r 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 (445)
Q Consensus 260 ~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~ 288 (445)
++.+..|+-+|++..+++.+.+.++..|.
T Consensus 23 a~~Ga~V~i~d~~~~~~~~~~~~~~~~~~ 51 (256)
T PRK08643 23 VEDGFKVAIVDYNEETAKAAADKLSSDGG 51 (256)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 98799999996988999999999985399
No 247
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.06 E-value=2.7 Score=21.97 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCCCCEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCC-CCCCCCCEEEECCC
Q ss_conf 213310035564470000102568--410001059679877654432048874-17720774457-74344766896167
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDY-CPKKLFDAVLVDAP 315 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~-~~~~~fD~iLlDaP 315 (445)
..+.++.|.|+--+==...|+.++ ..++|.|+++.-++...+|+.+.++.. +.+..+|+... .....+|.|.+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI--- 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI--- 91 (226)
T ss_pred HCCCCEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEE---
T ss_conf 75994553267625768999965983268983106678999999887458852077752687312576677687999---
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEE
Q ss_conf 42110011011033328866778899999999999998608982899977478834399989999996887417
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~ 389 (445)
.|.|- .+=.+||+.....++.--++| +-|.-|+..++.+|..|.....
T Consensus 92 -AGMGG--------------------~lI~~ILee~~~~l~~~~rlI-----LQPn~~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 92 -AGMGG--------------------TLIREILEEGKEKLKGVERLI-----LQPNIHTYELREWLSANSYEIK 139 (226)
T ss_pred -ECCCH--------------------HHHHHHHHHHHHHHCCCCEEE-----ECCCCCHHHHHHHHHHCCCEEE
T ss_conf -57867--------------------899999998665505741078-----7888788999999996795144
No 248
>PRK10867 signal recognition particle protein; Provisional
Probab=75.93 E-value=4.4 Score=20.31 Aligned_cols=13 Identities=8% Similarity=0.335 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780666|r 82 LQQLLRVSVAQIL 94 (445)
Q Consensus 82 ~~~iLr~a~~ell 94 (445)
+..++.=.+.+++
T Consensus 74 i~kiv~~eL~~lL 86 (453)
T PRK10867 74 FVKIVRNELVAAM 86 (453)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999985
No 249
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.63 E-value=4.4 Score=20.37 Aligned_cols=129 Identities=16% Similarity=0.036 Sum_probs=72.4
Q ss_pred CCCCEECCCCCCC-CCE--EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCE
Q ss_conf 1331003556447-000--010256841000105967987765443204887417720774457743--------44766
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDA 309 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT--~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~ 309 (445)
.|+.+|=.-++.| |+. -++++.++.|+.+|.+..+++.+.+.++..|.. +..+..|..+...- +.|.+
T Consensus 13 ~gK~alITGgs~GIG~~ia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 91 (259)
T PRK06124 13 AGQVALVTGSARGLGLEIARALAEAGAHVLVNGRNAARVEAAVAALRAAGGA-AEALVFDISDEEAVAAAFARIDAEHGR 91 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9998999286748999999999987999999969889999999999965995-899995179999999999999997599
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHH----HHHHHHHHHHCCC--CCEEEEEE--CCCCHHHCH
Q ss_conf 89616742110011011033328866778899999----9999999986089--82899977--478834399
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ----RKLLLQGISFVKP--GGIVVFSN--CSLDKQDSE 374 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q----~~iL~~a~~~lk~--gG~lvYsT--CSi~~eEne 374 (445)
|=+=+.|.| .-.+.| ....++++..+.-++. ..+...+++.+++ +|++|..+ .+..+..+.
T Consensus 92 iDiLVnnAG--~~~~~~--~~~~~~e~~~~~~~~Nl~g~~~~~q~~~~~M~~~~~G~IInisS~~~~~~~~~~ 160 (259)
T PRK06124 92 LDILVNNVG--ARNRRP--LAELDDAEIRALLETDLVAPILLSRLAAQRMVRQGYGRIIAITSIAGEVARAGD 160 (259)
T ss_pred CCEEEECCC--CCCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 979998988--899999--066999999999999849999999999999877699369997233004679983
No 250
>PRK08324 short chain dehydrogenase; Validated
Probab=75.13 E-value=6.3 Score=19.20 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=83.7
Q ss_pred CHHHCHHHHHCCCEECCCC-CCCCCCCCCCCCCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 8555850110010134632-123222356321331003556447-0000--10256841000105967987765443204
Q gi|254780666|r 211 SIVSLPGFAEGVWWVQDAS-ASIPVQLFGTLNNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 (445)
Q Consensus 211 ~i~~~~~f~eG~~~VQD~a-Sql~~~~l~~~~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~ 286 (445)
++.+-+.|.=-+|...-.= ...+. -.+..|..+|=.-+|.| |+.+ .+++.++.|+..|++..+++...+.+...
T Consensus 391 ~l~e~e~F~~EYW~LEqaKL~~~~~--~~~L~GKVALVTGga~GIG~A~A~~fa~eGA~Vvl~D~~~~~l~~~a~el~~~ 468 (676)
T PRK08324 391 PLSEQEAFDIEYWSLEQAKLQKMPK--PKPLAGKVALVTGAAGGIGLATAKRLAAEGACVVLADIDEEAAEAAAAELGGR 468 (676)
T ss_pred CCCHHHHHCCCCCHHHHHHHHCCCC--CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC
T ss_conf 1688885365655177888626899--98889987999479881629999999987998999958889999999997079
Q ss_pred CCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 887417720774457743-----------447668961674211001101103332886677889999999999999860
Q gi|254780666|r 287 HLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 (445)
Q Consensus 287 g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~l 355 (445)
+ .+..+..|.++...- +..|.++--|-.+..|.+---++--|+.. +.-...=..-+...+.+.+
T Consensus 469 ~--~~~~~~~DVtd~~~v~~~v~~~~~~fGgIDiLVnNAGi~~~~~~~e~s~e~w~~~---~~vNl~g~f~~~r~a~p~M 543 (676)
T PRK08324 469 D--RALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIALSGPIGETSDELWRRS---FEVNFTGHFLVAREAVRIM 543 (676)
T ss_pred C--CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 9--4799980689999999999999998599888997677789988265999999999---9886099999999999999
Q ss_pred CC---CCEEEEEE
Q ss_conf 89---82899977
Q gi|254780666|r 356 KP---GGIVVFSN 365 (445)
Q Consensus 356 k~---gG~lvYsT 365 (445)
+. ||.+|+.+
T Consensus 544 ~~qg~GG~IV~is 556 (676)
T PRK08324 544 KAQGTGGNLVFIA 556 (676)
T ss_pred HHCCCCCEEEEEE
T ss_conf 9769991999982
No 251
>PRK11630 hypothetical protein; Provisional
Probab=74.83 E-value=4.3 Score=20.43 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=9.0
Q ss_pred CCCCCCCCCCHHHHHH
Q ss_conf 8997332562258775
Q gi|254780666|r 97 DVADYAVVDLAVEQAK 112 (445)
Q Consensus 97 ~~p~~a~vneaVelak 112 (445)
+.|...+|+++|+.-+
T Consensus 10 ~~p~~~~I~~A~~~L~ 25 (206)
T PRK11630 10 DNPQQRLINQAVDIVR 25 (206)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9989899999999997
No 252
>PRK07102 short chain dehydrogenase; Provisional
Probab=73.68 E-value=6.8 Score=18.95 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=30.6
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--------CCCCCEEEECC
Q ss_conf 025684100010596798776544320488741772077445774--------34476689616
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------KKLFDAVLVDA 314 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--------~~~fD~iLlDa 314 (445)
+++.+.+|+.++.+..+++.+.+.+...+-..+.+...|..+... ...+|.+++-|
T Consensus 21 la~~G~~v~l~~R~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~v~~a 84 (243)
T PRK07102 21 YAAAGARLYLAARDTERLERIAADLEARGAVAVATHELDILDTARHAAFLDNLPALPDTVLIAV 84 (243)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 9987998999989889999999999853586289984340369999999999875379799973
No 253
>PRK07890 short chain dehydrogenase; Provisional
Probab=73.67 E-value=6.8 Score=18.95 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=13.5
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 025684100010596798776544320488
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~ 288 (445)
+++.+++|+.+|.+..+++...+.+...|.
T Consensus 25 la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~ 54 (258)
T PRK07890 25 AAREGADVVLAARTAERLDEVAKQIDDLGR 54 (258)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 998799899997989999999999996499
No 254
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=73.46 E-value=3.7 Score=20.88 Aligned_cols=70 Identities=23% Similarity=0.225 Sum_probs=50.5
Q ss_pred CCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEE
Q ss_conf 13310035564470000102--568410001059679877654432048874177207744577434476689
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL 311 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iL 311 (445)
+..+|+|+.||=-==++-.| ..+...+|+||+..=++-+..-+.++|+. .++...|...-.+....|..|
T Consensus 102 ~p~sVlDlaCGlNPLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~-~~~~~~Dl~~~~p~~~~DvaL 173 (248)
T pfam07091 102 PPRSVLDLACGLNPLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVP-GEVRVRDLLTDPPAEPADVAL 173 (248)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCCHH
T ss_conf 986442000268830142336899867999707778999999999862987-637987610479988734004
No 255
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=73.43 E-value=3.3 Score=21.29 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=61.8
Q ss_pred CCCCCCCCEECCCCCCCCCEE-EEC-CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-C--CCCC-------CCC
Q ss_conf 563213310035564470000-102-568410001059679877654432048874177207-7--4457-------743
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTA-QLI-VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-D--AFDY-------CPK 304 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~-~l~-~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D--~~~~-------~~~ 304 (445)
...++|++|+=+-|||=|=.+ +++ ..+.+|+++|.++.|++.+ +++|.. .+++. | ..+. ...
T Consensus 162 ~~v~~g~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~~rle~a----~~~Ga~--~~i~~~~~~~~~~~~~~~~~~~~ 235 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM----KGFGAD--LTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHCCCC--EEECCCCCCHHHHHHHHHHHCCC
T ss_conf 178999889998974899999999998599799994999999999----964998--99878767789999999754145
Q ss_pred CCCCE---EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 44766---896167421100110110333288667788999999999999986089828999774788343999899999
Q gi|254780666|r 305 KLFDA---VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445)
Q Consensus 305 ~~fD~---iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445)
...|. +++| |+|+. ..++.+.+++++||+++..- +...+.+-.+..++
T Consensus 236 ~G~~~~~~~v~e--~~G~~-------------------------~~~~~a~~~~~~gG~iv~vG--~~~~~~~~~~~~l~ 286 (349)
T TIGR03201 236 RGLRSTGWKIFE--CSGSK-------------------------PGQESALSLLSHGGTLVVVG--YTMAKTEYRLSNLM 286 (349)
T ss_pred CCCCCCCCEEEE--ECCCH-------------------------HHHHHHHHHCCCCCEEEEEC--CCCCCCCCCHHHHH
T ss_conf 675655636998--24888-------------------------99999999735897999975--05998755489987
Q ss_pred HH
Q ss_conf 96
Q gi|254780666|r 382 RS 383 (445)
Q Consensus 382 ~~ 383 (445)
.+
T Consensus 287 ~~ 288 (349)
T TIGR03201 287 AF 288 (349)
T ss_pred HC
T ss_conf 36
No 256
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.31 E-value=6.9 Score=18.89 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=62.8
Q ss_pred CCCCEECCCCCCC-CCE--EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CC---
Q ss_conf 1331003556447-000--010256841000105967987765443204887417720774457743--------44---
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KL--- 306 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT--~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~--- 306 (445)
.|+.+|=--++-| ||. ..|++.+++|+.+|+++.+++...+.++..|-+ +..+..|.++...- ++
T Consensus 6 ~gKvalVTGgs~GIG~a~A~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~-~~~~~~Dvt~~~~v~~~v~~~~~~~G~ 84 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGK-AIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9998999585778999999999987999999979889999999999962993-999981589999999999999998199
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---CCCCEEEEE--ECCCCHHHC
Q ss_conf 7668961674211001101103332886677889999999999999860---898289997--747883439
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV---KPGGIVVFS--NCSLDKQDS 373 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~l---k~gG~lvYs--TCSi~~eEn 373 (445)
.|.++--|--+..|.+-..++-.|. +-+.-...-...+.+++.+.+ +.||++|.. +....+.-+
T Consensus 85 iDiLVnnAG~~~~~~~~~~~~e~w~---~~~~vNl~g~~~~~~~~~p~M~k~~~~G~IVnisS~~~~~~~~~ 153 (262)
T PRK13394 85 VDILVSNAGIQIVNPIENYSFADWK---KMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPL 153 (262)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC
T ss_conf 9999989988999991659999999---99999758999999999999998379968999745776767999
No 257
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=73.13 E-value=7 Score=18.86 Aligned_cols=128 Identities=17% Similarity=0.114 Sum_probs=65.2
Q ss_pred CCCCEECCCCCCC-CCE--EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCE
Q ss_conf 1331003556447-000--010256841000105967987765443204887417720774457743--------44766
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDA 309 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT--~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~ 309 (445)
.|+.+|=--++.| |+. ..+++.++.|+.+|.++.+++...+.++..|.. +..+..|.++...- ..|..
T Consensus 9 ~gK~alVTG~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~~~~~~~~~~~g~~-~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAEAGATIVFNDIKQELVDKGLAAYRELGIE-AHGYVCDVTDEDGIQAMVAQIEKEVGV 87 (265)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9998999585768999999999986999999959989999999999954991-799993289999999999999998299
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH----HHHHHHHHHHHC--CCCCEEEEE--ECCCCHHHC
Q ss_conf 8961674211001101103332886677889999----999999999860--898289997--747883439
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF----QRKLLLQGISFV--KPGGIVVFS--NCSLDKQDS 373 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~----Q~~iL~~a~~~l--k~gG~lvYs--TCSi~~eEn 373 (445)
+|.=+..-|+..+.| .+..++++.++...+ -.-+..++.+.+ +.+|++|-. +++..+..+
T Consensus 88 --iDiLVnNAG~~~~~~--~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~ 155 (265)
T PRK07097 88 --IDILVNNAGIIRRIP--MLEMSAEDFRQVIDIDLNAPFIVSKAVLPSMIKKGHGKIINICSMMSELGRET 155 (265)
T ss_pred --CCEEEECCCCCCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCC
T ss_conf --989998998999988--26599999999999860728999999999899808975999905211567888
No 258
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=72.92 E-value=7.1 Score=18.83 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHH
Q ss_conf 3213310035564470000102568410001059679877654
Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRC 281 (445)
Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~ 281 (445)
-.+|+.|||.+||-|.=...-...+-+-+.+|+++.-++.+++
T Consensus 179 s~~gd~VlDpF~GSGTT~~Aa~~l~R~~iG~E~~~~y~~~a~~ 221 (221)
T pfam01555 179 TNPGDIVLDPFAGSGTTGAAAKELGRNFIGIEIEEEYVEIAKE 221 (221)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHC
T ss_conf 9997999989998279999999829959999589999999619
No 259
>PRK11519 tyrosine kinase; Provisional
Probab=72.88 E-value=3.8 Score=20.80 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=20.9
Q ss_pred CCCCCEECCCCCCC-CCEEE---E---C-CCCCCHH--HHHCCHHHHHHH
Q ss_conf 21331003556447-00001---0---2-5684100--010596798776
Q gi|254780666|r 240 LNNLSVLDLCAAPG-GKTAQ---L---I-VSGAKVT--ALDVSKRRLEKL 279 (445)
Q Consensus 240 ~~g~~VLD~CAAPG-GKT~~---l---~-~~~~~i~--A~D~~~~Rl~~l 279 (445)
.++..|+=--+.|| |||+. | + ..+-++. =.|+...+++..
T Consensus 524 ~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~ 573 (720)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHEL 573 (720)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 88767999708999978999999999998379919999387777016775
No 260
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=71.95 E-value=2.9 Score=21.69 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=82.0
Q ss_pred HCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE------CCCCCC---HHHHH-CCHHHHHHHHHHHHCCCCC
Q ss_conf 0010134632123222356321331003556447000010------256841---00010-5967987765443204887
Q gi|254780666|r 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAK---VTALD-VSKRRLEKLRCNLDRLHLY 289 (445)
Q Consensus 220 eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l------~~~~~~---i~A~D-~~~~Rl~~l~~~~~R~g~~ 289 (445)
+|.-|==..+++.|+...+.+ --|||+-. .+++|. ++|-| -..-..+.|+.|+.|++++
T Consensus 110 nGkk~~p~Kgk~~ViMfVGLQ-----------GaGKTTtctKLA~YYk~rGfK~~lvCADTFRAGAFdQLkqNA~kA~iP 178 (453)
T TIGR01425 110 NGKKFTPKKGKSSVIMFVGLQ-----------GAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAKIP 178 (453)
T ss_pred CCCEEECCCCCCEEEEEEECC-----------CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 350341156882158886214-----------887156687877776326643256517754232489998747644897
Q ss_pred CE-EEEECCCCCCC-------CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 41-77207744577-------43447668961674211001101103332886677889999999999999860898289
Q gi|254780666|r 290 AE-DIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 (445)
Q Consensus 290 ~~-~~~~~D~~~~~-------~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~l 361 (445)
=. .-.+.|+-... ..++||.||||-. -|.+-..+-.+|.. .....++|.-++
T Consensus 179 FYGsy~E~DPVkiA~EGv~~Fk~E~~diIivDTS------------GRHkQe~~LF~Em~--------qv~~Ai~Pd~ii 238 (453)
T TIGR01425 179 FYGSYLESDPVKIASEGVEKFKKEKFDIIIVDTS------------GRHKQEEELFEEMV--------QVAEAIKPDSII 238 (453)
T ss_pred CCCCCCCCCCEEEECCCHHHHHCCCCCEEEEECC------------CCCHHHHHHHHHHH--------HHHHCCCCCCEE
T ss_conf 1201048987078002011322127847998379------------87322588889987--------686334998369
Q ss_pred EEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 99774788343999899999968
Q gi|254780666|r 362 VFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 362 vYsTCSi~~eEne~vV~~fL~~~ 384 (445)
-=.=-||= +=-|.|-++|=++.
T Consensus 239 fVMDGsIG-QAA~~QAkAFK~~~ 260 (453)
T TIGR01425 239 FVMDGSIG-QAAFSQAKAFKDSV 260 (453)
T ss_pred EEECCCHH-HHHHHHHHHHHHCC
T ss_conf 98066166-78899999863003
No 261
>PRK13699 putative methylase; Provisional
Probab=71.82 E-value=1.7 Score=23.45 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=33.5
Q ss_pred CCCCCCCCCC------CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 2123222356------3213310035564470000102568410001059679877654432
Q gi|254780666|r 229 SASIPVQLFG------TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLD 284 (445)
Q Consensus 229 aSql~~~~l~------~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~ 284 (445)
-+|.|+.++. -.+|+.|||-|+|-|.=...-...+-+-+.+|+++.=.+..+++++
T Consensus 145 PtqKPv~L~e~lI~~~S~~gdlVLDPF~GSGTT~vAA~~lgR~fIGiEi~~~Y~~ia~~Rl~ 206 (227)
T PRK13699 145 PTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 98692999999999559999999977998758999999819948999689999999999999
No 262
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=71.26 E-value=7.7 Score=18.57 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=88.1
Q ss_pred CCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCC-CCCC-EEEE-ECCCCC-----CCCCCCCCEE
Q ss_conf 1331003556447000010--256841000105967987765443204-8874-1772-077445-----7743447668
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL-HLYA-EDII-EMDAFD-----YCPKKLFDAV 310 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~-g~~~-~~~~-~~D~~~-----~~~~~~fD~i 310 (445)
+.-++||...|.-.==-.| ...+...+|.|+++.-++-.+.++++- ++.. |++. +.|... +.+.+.||..
T Consensus 117 ~~v~gLDIGtGAncIYPLLG~~~ygW~fvgtDId~~sl~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~fdft 196 (326)
T PRK11727 117 ANVRVLDIGVGANCIYPIIGVQEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDLT 196 (326)
T ss_pred CCCEEEECCCCCCEEEEECCCEECCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEEEEE
T ss_conf 87236750567431121014300176379961798999999999984820105279996278676532458876657778
Q ss_pred EECCCCCCC------CHHHCCCHHHHCC---C---------HHH----HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 961674211------0011011033328---8---------667----78899999999999998608982899977478
Q gi|254780666|r 311 LVDAPCSST------GTIRRHPDVLWTR---D---------TDD----IVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 (445)
Q Consensus 311 LlDaPCSg~------Gt~rr~Pd~~w~~---~---------~~~----l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi 368 (445)
+|-+|==.+ |+.|+--...-.. + ... =-+. ..=..|++.+..+-+ .+..=||=+
T Consensus 197 mCNPPF~~S~eea~~gt~Rk~~nl~~~~~~~~~~~lnfgG~~~EL~c~GGE~-~FI~rMI~ES~~~~~---~v~WfTslv 272 (326)
T PRK11727 197 LCNPPFHASAAEARAGSERKLRNLGKNKPKAAKPVLNFGGQNAELWCEGGEV-AFIKKMIEESVAFAK---QVLWFTSLV 272 (326)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCHH-HHHHHHHHHHHHHHC---CCEEEEECC
T ss_conf 5189876789999742045443203367888876424577642478468389-999999999998730---748983013
Q ss_pred CHHHCHHHHHHHHHHCC
Q ss_conf 83439998999999688
Q gi|254780666|r 369 DKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 369 ~~eEne~vV~~fL~~~~ 385 (445)
-+.+|-.-+.+.|++..
T Consensus 273 gKksnL~~l~~~L~~~~ 289 (326)
T PRK11727 273 SKKENLPPLYRALKKVG 289 (326)
T ss_pred CCCCCHHHHHHHHHHCC
T ss_conf 56203999999999769
No 263
>PRK08945 short chain dehydrogenase; Provisional
Probab=71.18 E-value=7.7 Score=18.55 Aligned_cols=120 Identities=22% Similarity=0.227 Sum_probs=69.8
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------------C
Q ss_conf 1331003556447-0000--1025684100010596798776544320488741772077445774-------------3
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------K 304 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-------------~ 304 (445)
.|+.||=--|+.| |+.+ ++++.+.+|+.++.+..+++.+.+.++..|.....++..|...-.. .
T Consensus 12 ~gK~~lITGas~GIG~aiA~~la~~Ga~Vil~~r~~~~l~~~~~el~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~ 91 (245)
T PRK08945 12 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLGATEQNYQDLADTIEEQF 91 (245)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 97989994886189999999999879989999698899999999999747984489994467599999999999999980
Q ss_pred CCCCEEEECCCCCCC-CHHHCCCHHHHCCCHHHHHHHHH----HHHHHHHHHHHHCC--CCCEEEEEECCC
Q ss_conf 447668961674211-00110110333288667788999----99999999998608--982899977478
Q gi|254780666|r 305 KLFDAVLVDAPCSST-GTIRRHPDVLWTRDTDDIVKSAC----FQRKLLLQGISFVK--PGGIVVFSNCSL 368 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~-Gt~rr~Pd~~w~~~~~~l~~l~~----~Q~~iL~~a~~~lk--~gG~lvYsTCSi 368 (445)
++.|.++.-| |. |. +.| .+..++++..+... -...+...+.+.++ ++|.+|..+ |.
T Consensus 92 g~iD~lVnNA---G~~~~--~~~--~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~G~Ii~is-S~ 154 (245)
T PRK08945 92 GRLDGVLHNA---GLLGE--LGP--MEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTS-SS 154 (245)
T ss_pred CCCCEEEECC---CCCCC--CCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-CH
T ss_conf 9987999888---75578--988--2669999999987567599999999999999877997899978-62
No 264
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=70.73 E-value=2.6 Score=22.00 Aligned_cols=124 Identities=20% Similarity=0.219 Sum_probs=61.8
Q ss_pred CCCC--CCCEEEEC-------CCCC--CHHHHHC-CHHHHHHHHHHHHCCCCCCEEEE-ECCCCC-------CCCCCCCC
Q ss_conf 5644--70000102-------5684--1000105-96798776544320488741772-077445-------77434476
Q gi|254780666|r 249 CAAP--GGKTAQLI-------VSGA--KVTALDV-SKRRLEKLRCNLDRLHLYAEDII-EMDAFD-------YCPKKLFD 308 (445)
Q Consensus 249 CAAP--GGKT~~l~-------~~~~--~i~A~D~-~~~Rl~~l~~~~~R~g~~~~~~~-~~D~~~-------~~~~~~fD 308 (445)
..|| =|||+-++ ..+. -+++.|. .....+.|+...+.+|+.-.... ..|... ......+|
T Consensus 6 lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~~D 85 (196)
T pfam00448 6 LVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAENYD 85 (196)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98999998899999999999977992899975877688999999999863981781487778789999999998846899
Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCHHHCHHHHHHHHHHC-CC
Q ss_conf 689616742110011011033328866778899999999999998608982-8999774788343999899999968-87
Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG-IVVFSNCSLDKQDSEEVVQKVLRSS-PI 386 (445)
Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG-~lvYsTCSi~~eEne~vV~~fL~~~-~~ 386 (445)
.||+|-| .|+ ..++..+.++.+++..+ +|-= .||-+ +-...+--+++..|-+.. ..
T Consensus 86 ~IlIDTa-------Gr~-----~~d~~~~~el~~~~~~~--------~~~~~~LVl~--a~~~~~~~~~~~~f~~~~~~~ 143 (196)
T pfam00448 86 VVLVDTA-------GRL-----QNDKNLMDELKKIKRVI--------APDEVLLVLD--ATTGQNALNQAKAFNEAVGIT 143 (196)
T ss_pred EEEEECC-------CCC-----CCCHHHHHHHHHHHHHC--------CCCCEEEEEE--CCCCCCHHHHHHHHHHHCCCC
T ss_conf 9999899-------987-----47677899999998522--------8730289985--677821378999876004776
Q ss_pred CEEECCCC
Q ss_conf 41781376
Q gi|254780666|r 387 PVELVPLN 394 (445)
Q Consensus 387 ~~~~~~~~ 394 (445)
.+-+..++
T Consensus 144 ~~I~TKlD 151 (196)
T pfam00448 144 GVILTKLD 151 (196)
T ss_pred CEEEEEEC
T ss_conf 26888405
No 265
>KOG3673 consensus
Probab=70.36 E-value=1.3 Score=24.25 Aligned_cols=10 Identities=0% Similarity=-0.037 Sum_probs=5.5
Q ss_pred EEEECCCCHH
Q ss_conf 9977478834
Q gi|254780666|r 362 VFSNCSLDKQ 371 (445)
Q Consensus 362 vYsTCSi~~e 371 (445)
+|.||.|..+
T Consensus 750 l~~~r~i~~~ 759 (845)
T KOG3673 750 LRFTRIIKQE 759 (845)
T ss_pred EEEEEEECCC
T ss_conf 5999970651
No 266
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain; InterPro: IPR010143 This entry represents all three varieties (Fe-Fe, Mo-Fe and V-Fe) of the component I alpha chain of nitrogenase. Nitrogenase (1.18.6.1 from EC) is the enzyme system responsible for biological nitrogen fixation. Nitrogenase is an oligomeric complex which consists of two components: component 2 is an homodimer of an iron-sulphur protein, while component 1 which contains the active site for the reduction of nitrogen to ammonia exists in three different forms: the molybdenum-iron containing protein (MoFe) is a hetero-tetramer consisting of two pairs of alpha (nifD) and beta (nifK) subunits; the vanadium-iron containing protein (VFe) is a hexamer of two pairs each of alpha (vnfD), beta (vnfK), and delta (vnfG) subunits; the third form seems to only contain iron and is a hexamer composed of alpha (anfD), beta (anfK), and delta (anfG) subunits. The alpha and beta chains of the three types of component 1 are evolutionary related and they are also related to proteins nifE and nifN, which are most probably involved in the iron-molybdenum cofactor biosynthesis .; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=69.41 E-value=5.2 Score=19.82 Aligned_cols=134 Identities=15% Similarity=0.263 Sum_probs=56.8
Q ss_pred ECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 346321232223563213310035564-4700001025684100010596798776544320488741772077445774
Q gi|254780666|r 225 VQDASASIPVQLFGTLNNLSVLDLCAA-PGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 (445)
Q Consensus 225 VQD~aSql~~~~l~~~~g~~VLD~CAA-PGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~ 303 (445)
||+.+-.++++-... .+..||.=== ==||+..|=-.+.++.-+ .+. -.+-||+..+.+ +.++.-
T Consensus 303 I~~r~EevIae~~a~--w~p~ld~yKerL~GK~v~ly~GG~r~wH~------~~~---~~~~lG~~VV~~----~~~F~H 367 (510)
T TIGR01862 303 IEKRAEEVIAEEIAK--WKPELDYYKERLQGKRVCLYVGGSRLWHW------IKS---LEEDLGVEVVAV----GIEFAH 367 (510)
T ss_pred HHHHHHHHHHHHHHH--CCCHHHHHHHHHCCCEEEEECCCCCHHHH------HHH---HHHHCCCEEEEE----EEEECC
T ss_conf 226888877874421--04124541131149889997588800111------125---777639459997----566434
Q ss_pred CCCCC------EEEECCCCCCCCHHHCCCHH-HHC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE------EEECCC
Q ss_conf 34476------68961674211001101103-332--8866778899999999999998608982899------977478
Q gi|254780666|r 304 KKLFD------AVLVDAPCSSTGTIRRHPDV-LWT--RDTDDIVKSACFQRKLLLQGISFVKPGGIVV------FSNCSL 368 (445)
Q Consensus 304 ~~~fD------~iLlDaPCSg~Gt~rr~Pd~-~w~--~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv------YsTCSi 368 (445)
.+-|| .|=+||-.-..--+.=-||- |+| ..+..+++|. ....++-.=||.+- |..==.
T Consensus 368 ~dDyEkreviPtikidadskniPeitvtPdeqkyrvviPedkveelk-------kaGvPlssyGG~~kr~~eGT~~iDD~ 440 (510)
T TIGR01862 368 EDDYEKREVIPTIKIDADSKNIPEITVTPDEQKYRVVIPEDKVEELK-------KAGVPLSSYGGVMKRMGEGTLLIDDP 440 (510)
T ss_pred CCCCCCCEECCEEEECCCCCCCCEEEECCCCCEEEEECCCCHHHHHH-------HCCCCCCCCCCEEEEECCCCEEEECC
T ss_conf 47877621132256615666687126456764137862741367887-------54873003476378723540789678
Q ss_pred CHHHCHHHHHHH
Q ss_conf 834399989999
Q gi|254780666|r 369 DKQDSEEVVQKV 380 (445)
Q Consensus 369 ~~eEne~vV~~f 380 (445)
+.-|-|++|++.
T Consensus 441 N~lE~ee~~e~~ 452 (510)
T TIGR01862 441 NELEFEEIIEKL 452 (510)
T ss_pred CCCCHHHHHHHH
T ss_conf 885077766651
No 267
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=69.07 E-value=2.5 Score=22.13 Aligned_cols=118 Identities=22% Similarity=0.292 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE-------CCCCCCHHHHHCCHHHHHHHHHHHHCC--CCC--CEEEE
Q ss_conf 4632123222356321331003556447000010-------256841000105967987765443204--887--41772
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-------IVSGAKVTALDVSKRRLEKLRCNLDRL--HLY--AEDII 294 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l-------~~~~~~i~A~D~~~~Rl~~l~~~~~R~--g~~--~~~~~ 294 (445)
|..+|...+...+-+...-|+-+|-| |||-.+ .++++.|. +-..|++...|-..|+ .+. .|.+.
T Consensus 102 Q~~as~~l~q~i~~k~~~lv~AV~Ga--GKTEMif~~i~~al~~G~~vc---iASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 102 QKKASNQLVQYIKQKEDTLVWAVTGA--GKTEMIFQGIEQALNQGGRVC---IASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCEEE---EECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 78999999999871576899974279--851016999999996598699---8468610117778999976214986667
Q ss_pred ECCCCCC--------------CCCCCCCEEEECCCCCCCCHHHCCCHHH-HCCCHHHHHHHHHHHHHHHHH-HHHHCCCC
Q ss_conf 0774457--------------7434476689616742110011011033-328866778899999999999-99860898
Q gi|254780666|r 295 EMDAFDY--------------CPKKLFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKSACFQRKLLLQ-GISFVKPG 358 (445)
Q Consensus 295 ~~D~~~~--------------~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~-w~~~~~~l~~l~~~Q~~iL~~-a~~~lk~g 358 (445)
.+|+... ...+.||.+++|-= |+. +..+ +.|.. +-+..|++
T Consensus 177 yg~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEV-----------DAFP~~~d------------~~L~~Av~~ark~~ 233 (441)
T COG4098 177 YGDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEV-----------DAFPFSDD------------QSLQYAVKKARKKE 233 (441)
T ss_pred ECCCCHHCCCCEEEEEHHHHHHHHHHCCEEEEECC-----------CCCCCCCC------------HHHHHHHHHHHCCC
T ss_conf 25871313344799766888888864338998302-----------45656678------------88999999751236
Q ss_pred CEEEEEECCCCHH
Q ss_conf 2899977478834
Q gi|254780666|r 359 GIVVFSNCSLDKQ 371 (445)
Q Consensus 359 G~lvYsTCSi~~e 371 (445)
|-++|.|-|-..+
T Consensus 234 g~~IylTATp~k~ 246 (441)
T COG4098 234 GATIYLTATPTKK 246 (441)
T ss_pred CCEEEEECCCHHH
T ss_conf 7369996488078
No 268
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=68.72 E-value=6.1 Score=19.29 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=12.0
Q ss_pred CEEEECCCCCCCCHHHCC
Q ss_conf 668961674211001101
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRH 325 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~ 325 (445)
-.|++|. |-..|.++++
T Consensus 362 GhV~idl-C~~dg~le~~ 378 (484)
T COG5459 362 GHVMIDL-CAPDGELEEW 378 (484)
T ss_pred CEEEEEE-CCCCCHHHHH
T ss_conf 8488862-1775326551
No 269
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.39 E-value=7.4 Score=18.69 Aligned_cols=117 Identities=18% Similarity=0.157 Sum_probs=61.8
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------C---C
Q ss_conf 1331003556447-0000--10256841000105967987765443204887417720774457743--------4---4
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------K---L 306 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~---~ 306 (445)
.|+++|=--|+.| |+.. .+++.+++|+.+|.+..+++.+.+.+...|-. +..+..|.++...- + .
T Consensus 8 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ei~~~g~~-~~~~~~Dvt~~~~v~~~v~~~~~~~G~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGK-VVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9998999795659999999999986999999979889999999999845991-999983699999999999999999599
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHH----HHHHHHHHHC-C--CCCEEEEEE
Q ss_conf 766896167421100110110333288667788999999----9999999860-8--982899977
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR----KLLLQGISFV-K--PGGIVVFSN 365 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~----~iL~~a~~~l-k--~gG~lvYsT 365 (445)
.|.++--| |.....| .+..++++..+...+-. -+...+.+.+ + .||.+|-.+
T Consensus 87 iDiLVnNA-----G~~~~~~--~~~~~~e~w~~~~~vNl~g~f~~~~~~~~~m~~~~~gg~Ivnis 145 (253)
T PRK05867 87 IDIAVCNA-----GIITVTP--MLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCEEEECC-----CCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 85999899-----7788875--01099999999999975999999999999999818998038875
No 270
>KOG2425 consensus
Probab=67.35 E-value=8.9 Score=18.07 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHCC-CCCCHHHHHHHCCCHHHHH
Q ss_conf 4444431022110011-1100000123129978999
Q gi|254780666|r 120 FAKLVNSILRRVSREK-IELLQRIAGISIIPEWFKE 154 (445)
Q Consensus 120 ~~~~vNAVLR~~~r~~-~~~~~~l~~~~s~P~Wl~~ 154 (445)
..+|||+++....+.. .-+...++-.-++|.||++
T Consensus 105 i~RfVNglid~tqqsq~aVpla~lA~~IgiP~wfVD 140 (599)
T KOG2425 105 IVRFVNGLIDPTQQSQAAVPLACLAQEIGIPDWFVD 140 (599)
T ss_pred HHHHHHHCCCHHHHHHHCCCHHHHHHHCCCCHHHHH
T ss_conf 999988615877642111658999987398378887
No 271
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=67.00 E-value=3.3 Score=21.28 Aligned_cols=142 Identities=20% Similarity=0.275 Sum_probs=88.7
Q ss_pred CCCCCEECCCCCCC-CCEEEE------CCCCCC--HHH----HHCCHHHHHH--------------------HH---HHH
Q ss_conf 21331003556447-000010------256841--000----1059679877--------------------65---443
Q gi|254780666|r 240 LNNLSVLDLCAAPG-GKTAQL------IVSGAK--VTA----LDVSKRRLEK--------------------LR---CNL 283 (445)
Q Consensus 240 ~~g~~VLD~CAAPG-GKT~~l------~~~~~~--i~A----~D~~~~Rl~~--------------------l~---~~~ 283 (445)
..|-.|||+=++|| |||+.| ++...+ |++ .+.+..|++. +. ..+
T Consensus 31 ~~g~~~lNfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~~DA~RlR~~G~~a~~~nTGk~CHLdA~mv~G~~~~L 110 (225)
T TIGR00073 31 KEGLLVLNFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTKNDADRLRKYGVPAIQINTGKECHLDAHMVAGAIHAL 110 (225)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 65978998025886115899999999845789789997553225569999864986886368864440166786587554
Q ss_pred HCCCCCCE-EE--EECC-----CCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHH-----CCCHHHHHHHHHHHHHHHHH
Q ss_conf 20488741-77--2077-----445774344766896167421100110110333-----28866778899999999999
Q gi|254780666|r 284 DRLHLYAE-DI--IEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW-----TRDTDDIVKSACFQRKLLLQ 350 (445)
Q Consensus 284 ~R~g~~~~-~~--~~~D-----~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w-----~~~~~~l~~l~~~Q~~iL~~ 350 (445)
+++++.+. .+ ++.= +.++.-.+..-.||+=+| =|-=+.=|||.+.- -.+..||.+....-.+-+.+
T Consensus 111 ~~~~ld~~~DlL~IENVGNLvCP~~FdLGe~~rVvllSVT-EGdDk~lKyP~~F~~Ad~~~inK~DL~~~v~~D~ek~~~ 189 (225)
T TIGR00073 111 KDLPLDDISDLLLIENVGNLVCPADFDLGEHMRVVLLSVT-EGDDKVLKYPAMFKEADLILINKVDLAEAVGFDVEKMKA 189 (225)
T ss_pred HCCCCCCCCCEEEEEECCCCEECCCCCCCCCCEEEEEEEC-CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCHHHHHH
T ss_conf 2168887146268864476100673112356307999865-899965466158874445621478899770736789999
Q ss_pred HHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 9986089828999774788343999899999968
Q gi|254780666|r 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 351 a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
-++.++|.-.++- -|.--=|+=+.+-.||+..
T Consensus 190 d~~~~nP~a~Ii~--~S~ktg~Gl~~w~~~l~~~ 221 (225)
T TIGR00073 190 DARKINPEAEIIL--VSAKTGKGLDEWLEFLEGK 221 (225)
T ss_pred HHHHHCCCEEEEE--EECCCCCCHHHHHHHHHHH
T ss_conf 9986289507998--6368973478999999986
No 272
>PRK09291 short chain dehydrogenase; Provisional
Probab=66.86 E-value=9.3 Score=17.93 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=12.0
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 25684100010596798776544320488
Q gi|254780666|r 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 (445)
Q Consensus 260 ~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~ 288 (445)
++.+.+|++++.+..+++.+++.+...|.
T Consensus 23 a~~G~~Vi~~~r~~~~l~~l~~~~~~~g~ 51 (257)
T PRK09291 23 ARKGHRVIAGVQIAPQVTELRAEAARRGL 51 (257)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 98799899996878999999999985299
No 273
>PHA02518 ParA-like protein; Provisional
Probab=66.07 E-value=9.6 Score=17.82 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=42.4
Q ss_pred CCCCCEEEECCCCCCCCHHHCC---CHH---HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EE-EEEECCCCHHHCHH
Q ss_conf 3447668961674211001101---103---3328866778899999999999998608982-89-99774788343999
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRH---PDV---LWTRDTDDIVKSACFQRKLLLQGISFVKPGG-IV-VFSNCSLDKQDSEE 375 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~---Pd~---~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG-~l-vYsTCSi~~eEne~ 375 (445)
...||.|++|.|-+-+...+.= -|. .-.-++-|+..+..+...| +.+- -+.++- .. +..++...+.-...
T Consensus 74 ~~~yD~viID~pp~~~~~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 151 (211)
T PHA02518 74 ASGYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELI-KARQ-EVTDGLPKFAFIISRAIKNTQLYR 151 (211)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH-HHHH-HHCCCCCEEEEEEECCCCCCHHHH
T ss_conf 06788899889997429999999958969996378687899999999999-9999-866567516888623586656999
Q ss_pred HHHHHHHHCC
Q ss_conf 8999999688
Q gi|254780666|r 376 VVQKVLRSSP 385 (445)
Q Consensus 376 vV~~fL~~~~ 385 (445)
.+..+|++..
T Consensus 152 ~~~~~l~~~~ 161 (211)
T PHA02518 152 EARKALAGYG 161 (211)
T ss_pred HHHHHHHHCC
T ss_conf 9999999869
No 274
>KOG0025 consensus
Probab=65.95 E-value=2.3 Score=22.47 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 110010134632123222356321331003556447000010256841000105967987765443204887
Q gi|254780666|r 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 (445)
Q Consensus 218 f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~ 289 (445)
++.|.|.||+.|...| |..|+-+|.|-|-||.-+..++.. ++.+++.++++|..
T Consensus 158 L~~GD~vIQNganS~V--------G~~ViQlaka~GiktinvVRdR~~----------ieel~~~Lk~lGA~ 211 (354)
T KOG0025 158 LNKGDSVIQNGANSGV--------GQAVIQLAKALGIKTINVVRDRPN----------IEELKKQLKSLGAT 211 (354)
T ss_pred CCCCCEEEECCCCCHH--------HHHHHHHHHHHCCCEEEEEECCCC----------HHHHHHHHHHCCCC
T ss_conf 3799824446752288--------899999999839644777515846----------99999999974886
No 275
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.83 E-value=9.7 Score=17.79 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred ECCCCCCHH-HHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCCC
Q ss_conf 025684100-0105967987765443204887417720774457743-----------4476689616742110011011
Q gi|254780666|r 259 LIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHP 326 (445)
Q Consensus 259 l~~~~~~i~-A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~P 326 (445)
+++++.+|+ ..+.+.++++.+.+.++-.|.. +..+..|..+...- ...|.++--| |.....|
T Consensus 25 la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lVnnA-----g~~~~~~ 98 (247)
T PRK05565 25 LAKEGAKVVIAYDKNEEAANELLEEIKEVGGD-AIAVKADVSSEDDVENLVEQIVEKFGKIDILVNNA-----GISKFGL 98 (247)
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECC-----CCCCCCC
T ss_conf 99879989998179989999999999963990-89998358999999999999999809984999899-----8789999
Q ss_pred HHHHCCCHHHHHHHHHH----HHHHHHHHHHHC--CCCCEEEEE
Q ss_conf 03332886677889999----999999999860--898289997
Q gi|254780666|r 327 DVLWTRDTDDIVKSACF----QRKLLLQGISFV--KPGGIVVFS 364 (445)
Q Consensus 327 d~~w~~~~~~l~~l~~~----Q~~iL~~a~~~l--k~gG~lvYs 364 (445)
.+..++++..+...+ ...+...+.+.+ .++|.+|..
T Consensus 99 --~~~~~~~~~~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~II~i 140 (247)
T PRK05565 99 --VTDMTDEEWDRVINVNLTGVMRLTRYALPIMIKRGSGVIVNI 140 (247)
T ss_pred --HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf --155999999999998547899999985798875699759997
No 276
>PRK12939 short chain dehydrogenase; Provisional
Probab=65.65 E-value=9.8 Score=17.77 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=60.0
Q ss_pred CCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCEE
Q ss_conf 331003556447-0000--10256841000105967987765443204887417720774457743--------447668
Q gi|254780666|r 242 NLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDAV 310 (445)
Q Consensus 242 g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~i 310 (445)
|+.+|=--|+.| |+.. .|++.++.|+.+|.+..+++...+.++..|.+ +.....|..+...- ++|-+|
T Consensus 7 ~KvalVTGgs~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~-~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 85 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGR-AHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 987999583668999999999987999999969889999999999955990-9999924899999999999999974999
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHH----HHHHHHHHHHCCC--CCEEE
Q ss_conf 9616742110011011033328866778899999----9999999986089--82899
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ----RKLLLQGISFVKP--GGIVV 362 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q----~~iL~~a~~~lk~--gG~lv 362 (445)
=+=+-|.| ...+.| .+..++++.++...+. .-+...+.+.++. +|.+|
T Consensus 86 DiLVNNAG--~~~~~~--~~~~~~e~~~~~~~iNl~~~~~~~k~~~~~m~~~~~G~II 139 (250)
T PRK12939 86 DGLVNNAG--ITNSKS--ATELDIDTWDAVMNVNVRGTFLMSRAALPHLRDSGRGRIV 139 (250)
T ss_pred CEEEECCC--CCCCCC--CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 79998877--899999--0349999999999998299999999999999984993799
No 277
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=65.64 E-value=9.8 Score=17.77 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 447668961674211001101103332886677889999999999999860-8982899977478834399989999996
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV-KPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~l-k~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
+..+.+++|-||||+-+..+ +. ++.-..-+ .+|-.++|||-++ +|=|.+.+.|.--
T Consensus 150 h~P~i~vlDEP~sGLDi~~~-------r~--------------~~dfi~q~k~egr~viFSSH~m--~EvealCDrvivl 206 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTR-------RK--------------FHDFIKQLKNEGRAVIFSSHIM--QEVEALCDRVIVL 206 (245)
T ss_pred CCCCEEEECCCCCCCCHHHH-------HH--------------HHHHHHHHHCCCCEEEEECCCH--HHHHHHHHEEEEE
T ss_conf 39876997689877427879-------99--------------9999998525794899961317--9999861358997
Q ss_pred CCCCE
Q ss_conf 88741
Q gi|254780666|r 384 SPIPV 388 (445)
Q Consensus 384 ~~~~~ 388 (445)
|.+.+
T Consensus 207 h~Gev 211 (245)
T COG4555 207 HKGEV 211 (245)
T ss_pred ECCCE
T ss_conf 46808
No 278
>PRK09186 flagellin modification protein A; Provisional
Probab=63.78 E-value=11 Score=17.52 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=10.5
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 256841000105967987765443204
Q gi|254780666|r 260 IVSGAKVTALDVSKRRLEKLRCNLDRL 286 (445)
Q Consensus 260 ~~~~~~i~A~D~~~~Rl~~l~~~~~R~ 286 (445)
++.++.|+.+|++..+++.+.+.+...
T Consensus 25 a~~Ga~V~~~~~~~~~~~~~~~~l~~~ 51 (255)
T PRK09186 25 LEAGGIVIAADINKEALNKLLESLGTI 51 (255)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 987999999969889999999999870
No 279
>pfam00827 Ribosomal_L15e Ribosomal L15.
Probab=63.60 E-value=7.6 Score=18.60 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=30.5
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECCCCCCCCHHHCCCHHHHCCCH
Q ss_conf 5443204887417720774457743-447668961674211001101103332886
Q gi|254780666|r 280 RCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 (445)
Q Consensus 280 ~~~~~R~g~~~~~~~~~D~~~~~~~-~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~ 334 (445)
++++.| .+.|-++.++.--.-... .-|..||||+-+. .|+++|++-|-.++
T Consensus 102 EeRa~r-k~~nl~VLNSYwV~qDg~yk~yEVIlvDp~hp---aIr~D~~~nWI~~~ 153 (192)
T pfam00827 102 EERAGR-KCPNLRVLNSYWVGQDGTYKYYEVILVDPFHP---AIRNDPRINWICKP 153 (192)
T ss_pred HHHHHC-CCCCCEEECCEEECCCCCEEEEEEEEECCCCH---HHHCCCCCCEECCC
T ss_conf 998626-48986885114324777635799998667875---34028765513266
No 280
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.52 E-value=11 Score=17.49 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=7.7
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 68410001059679877654432
Q gi|254780666|r 262 SGAKVTALDVSKRRLEKLRCNLD 284 (445)
Q Consensus 262 ~~~~i~A~D~~~~Rl~~l~~~~~ 284 (445)
.+..|+.+|++..+++...+.++
T Consensus 27 ~Ga~V~~~~~~~~~~~~~~~~~~ 49 (258)
T PRK12429 27 EGAKVVIADLNDEAAAKAAEAIK 49 (258)
T ss_pred CCCEEEEEECCHHHHHHHHHHHH
T ss_conf 79999999798899999999998
No 281
>KOG1678 consensus
Probab=63.40 E-value=3.2 Score=21.38 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=21.8
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCH
Q ss_conf 447668961674211001101103332886
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~ 334 (445)
.-|..||+|+--. .|||+|++-|-.++
T Consensus 128 k~fEVIlvDp~h~---aIRrdp~~nwI~kp 154 (204)
T KOG1678 128 KYFEVILVDPFHK---AIRRDPRINWICKP 154 (204)
T ss_pred EEEEEEEECCHHH---HHHCCCCCCCCCCH
T ss_conf 2589999871788---87429874401252
No 282
>PTZ00026 60S ribosomal protein L15; Provisional
Probab=63.02 E-value=6.8 Score=18.93 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=22.0
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCH
Q ss_conf 447668961674211001101103332886
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~ 334 (445)
.-|..||||+.+. .|+++|++-|-.++
T Consensus 128 k~yEVIlvDp~h~---aIr~D~~~nWI~~~ 154 (204)
T PTZ00026 128 KWYEVILVDPMHP---AIRNDPRINWICNP 154 (204)
T ss_pred EEEEEEEECCCCC---CEEECCCCCEECCC
T ss_conf 7899997079994---30378875520477
No 283
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=62.96 E-value=11 Score=17.42 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 1331003556447-0000--10256841000105967987765443204887417720774457
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~ 301 (445)
.|+.+|=--|+.| |+.+ .|++.+++|+.+|++..+++.+.+.++..|.. +..+..|.++.
T Consensus 9 ~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~-~~~~~~Dvtd~ 71 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVEEIKANGGE-AIALKADVLDK 71 (278)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE-EEEEECCCCCH
T ss_conf 9998999586748999999999987998999979889999999999845990-99998248999
No 284
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=62.93 E-value=11 Score=17.42 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=46.6
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCCCH
Q ss_conf 0256841000105967987765443204887417720774457743-----------44766896167421100110110
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHPD 327 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~Pd 327 (445)
+++.+..|+.+|.++.+++.+.+.++..|.. +..+..|..+...- +..|.++--| |.....|
T Consensus 25 la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~-~~~~~~Dl~~~~~~~~~~~~~~~~~g~iDilvnnA-----g~~~~~~- 97 (246)
T PRK05653 25 LAADGARVVIYDSNEEAAEALAEELRAAGGE-AALLVFDVTDEAAVRALIEAAVERFGGLDVLVNNA-----GITRDAL- 97 (246)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC-----CCCCCCC-
T ss_conf 9987999999979999999999999965994-89999728999999999999999749986999899-----9999988-
Q ss_pred HHHCCCHHHHHHHHHH----HHHHHHHHHHHCC--CCCEEEEE
Q ss_conf 3332886677889999----9999999998608--98289997
Q gi|254780666|r 328 VLWTRDTDDIVKSACF----QRKLLLQGISFVK--PGGIVVFS 364 (445)
Q Consensus 328 ~~w~~~~~~l~~l~~~----Q~~iL~~a~~~lk--~gG~lvYs 364 (445)
.+..+.++..+...+ ...+...+.+.++ ++|.+|..
T Consensus 98 -~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~i 139 (246)
T PRK05653 98 -LPRMSEEDWDRVIDTNLTGTFNVCRAALPPMRKARYGRIVNI 139 (246)
T ss_pred -CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf -013999999999998608899999999999998469978998
No 285
>PRK06198 short chain dehydrogenase; Provisional
Probab=62.77 E-value=11 Score=17.40 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=8.4
Q ss_pred HHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 0001059679877654432048
Q gi|254780666|r 266 VTALDVSKRRLEKLRCNLDRLH 287 (445)
Q Consensus 266 i~A~D~~~~Rl~~l~~~~~R~g 287 (445)
|+.++.+..+++.+.+.++..|
T Consensus 34 v~~~~~~~~~~~~~~~~~~~~g 55 (268)
T PRK06198 34 LVICGRSAEKGEAKAAELEALG 55 (268)
T ss_pred EEEECCCHHHHHHHHHHHHHCC
T ss_conf 9996298889999999999549
No 286
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=62.48 E-value=9.5 Score=17.86 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999999860898289997
Q gi|254780666|r 342 CFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 342 ~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
..|.+|+..-...|+|||.|+=-
T Consensus 218 ~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 218 ETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999974899789982
No 287
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=62.35 E-value=5.9 Score=19.40 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=41.8
Q ss_pred CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCCCCCCCEEEECC---CCCCCCHHH
Q ss_conf 841000105967987765443204887417720774---4577434476689616---742110011
Q gi|254780666|r 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDA---PCSSTGTIR 323 (445)
Q Consensus 263 ~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~---~~~~~~~~fD~iLlDa---PCSg~Gt~r 323 (445)
+-+|.-+|=++.=.+.++..++++|+.++... .|+ ........||.|++|- ..+|...++
T Consensus 5 ~lrILivDD~~~~r~~l~~~L~~~g~~~v~~a-~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~ 70 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEA-EDGVDALNKLQAGGFGFVISDWNMPNMDGLELLK 70 (129)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 98999997989999999999998699789998-9999999999858999999818999998999999
No 288
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.27 E-value=11 Score=17.33 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=56.5
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCEEEECCCCCCCCHHHCCCHHH
Q ss_conf 10256841000105967987765443204887417720774457743--------4476689616742110011011033
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDAVLVDAPCSSTGTIRRHPDVL 329 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~iLlDaPCSg~Gt~rr~Pd~~ 329 (445)
++++.+++|+.+|+++.+++.+.+.++..|. .+..+..|..+...- ++|-.| |.=+-.-|+-...| .
T Consensus 22 ~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dv~d~~~v~~~v~~~~~~~G~i--DilvnnAg~~~~~~--~ 96 (250)
T TIGR03206 22 RFAEEGAKVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQALGPV--DVLVNNAGWDKFGP--F 96 (250)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHHHHHHHCCCC--CEEEECCCCCCCCC--C
T ss_conf 9998799999997988999999999995399-28999944899999999999999975999--79998988899989--0
Q ss_pred HCCCHHHHHHHHHH----HHHHHHHHHHHC--CCCCEEEEEE--CCCCHHHCHH
Q ss_conf 32886677889999----999999999860--8982899977--4788343999
Q gi|254780666|r 330 WTRDTDDIVKSACF----QRKLLLQGISFV--KPGGIVVFSN--CSLDKQDSEE 375 (445)
Q Consensus 330 w~~~~~~l~~l~~~----Q~~iL~~a~~~l--k~gG~lvYsT--CSi~~eEne~ 375 (445)
...++++..+...+ ..-+...+.+.+ +.+|++|..+ .+..+..+..
T Consensus 97 ~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~~~~~~~~~~ 150 (250)
T TIGR03206 97 TKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSGEA 150 (250)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCH
T ss_conf 349999999999998299999999999999974991799965577576899858
No 289
>TIGR02889 spore_YpeB germination protein YpeB; InterPro: IPR014239 Proteins in this entry include the sporulation protein YpeB from Bacillus subtilis. YpeB and the putative spore-cortex-lytic enzyme SleB are required for normal germination. These proteins appear to be restricted to endospore-forming species in the Firmicutes lineage of bacteria, and have been found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary for SleB to function..
Probab=61.55 E-value=9.9 Score=17.75 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=41.7
Q ss_pred CCCCCEEEE-------EECCCCHHHCHHHHHHHHHHCCCCE--EECCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 089828999-------7747883439998999999688741--7813763233556643455868808988763
Q gi|254780666|r 355 VKPGGIVVF-------SNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 (445)
Q Consensus 355 lk~gG~lvY-------sTCSi~~eEne~vV~~fL~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~ 419 (445)
-+.||.+|| +--+|.-.|.-+.-++||+++. +- .+.+.-.........-..+-.++-++++|+.
T Consensus 295 s~~GG~~~~lL~~R~~~~~~i~~~~A~~~a~~fL~~~G-f~td~m~~t~~~~~dnv~~~~yVy~~~~V~~YPd~ 367 (465)
T TIGR02889 295 SKKGGKILYLLDNREVSKPKISLNEAVKKAKKFLEKIG-FKTDDMEPTYSAKYDNVGVVSYVYVQNEVRVYPDQ 367 (465)
T ss_pred EEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCEEHHCCCCCEEEEEEEEECCCEEECCCE
T ss_conf 85388788851587346534458999999999987338-42157411000117978999998651876887763
No 290
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=60.78 E-value=12 Score=17.15 Aligned_cols=93 Identities=22% Similarity=0.145 Sum_probs=54.0
Q ss_pred CCCCCCCCEECCCC-CCCCCEE-EECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCCCCCCCEEEE
Q ss_conf 56321331003556-4470000-1025-68410001059679877654432048874177207744-5774344766896
Q gi|254780666|r 237 FGTLNNLSVLDLCA-APGGKTA-QLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLV 312 (445)
Q Consensus 237 l~~~~g~~VLD~CA-APGGKT~-~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~-~~~~~~~fD~iLl 312 (445)
+...+|++||=.-| |+.|-.+ |++. .++++++++.++.|.+.+++ .+ +..+...+.. .......+|.|+
T Consensus 158 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~Ga~vi~v~~~~~k~~~~~~----~~--~~~i~~~~~~~~~~~~~g~Dvvi- 230 (332)
T PRK13771 158 AGVSEGETVLVTGAGGGVGIHAVQVAKAYGAKVIAVTTSESKAKAVGK----YA--DYVIVGSKFSEEVKKLGGADIVI- 230 (332)
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC--CEEEECCCHHHHHHHCCCCCEEE-
T ss_conf 199999999997787758999999999869989999499999999985----69--98983630578887346863898-
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1674211001101103332886677889999999999999860898289997
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
| |+|. ..+..+++.+++||+++..
T Consensus 231 d--~~G~--------------------------~~~~~~~~~l~~~G~iv~~ 254 (332)
T PRK13771 231 E--TVGG--------------------------PTLEESLRSLNWGGKIVLI 254 (332)
T ss_pred E--CCCH--------------------------HHHHHHHHHHCCCCEEEEE
T ss_conf 4--5766--------------------------8899888862589699999
No 291
>KOG0780 consensus
Probab=60.14 E-value=12 Score=17.07 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=14.9
Q ss_pred HHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 998608982899977478834399989999996
Q gi|254780666|r 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 351 a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
.++.++|. .++|..=+-.-++-|.|...|=+.
T Consensus 208 v~~ai~Pd-~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780 208 VSKAIKPD-EIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHHHCCCC-EEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 98515987-389998562007679999988776
No 292
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=59.82 E-value=12 Score=17.04 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=8.9
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 568410001059679877654432
Q gi|254780666|r 261 VSGAKVTALDVSKRRLEKLRCNLD 284 (445)
Q Consensus 261 ~~~~~i~A~D~~~~Rl~~l~~~~~ 284 (445)
+.+++|+.+|.++.+++...+.++
T Consensus 22 ~~Ga~V~i~~r~~~~l~~~~~~l~ 45 (259)
T PRK08340 22 KKGARVVISSRNEENLEKALKELK 45 (259)
T ss_pred HCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 879999999799899999999987
No 293
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=59.53 E-value=12 Score=17.20 Aligned_cols=23 Identities=39% Similarity=0.480 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999999860898289997
Q gi|254780666|r 342 CFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 342 ~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
+.|.+++++-...|+|||+|+-.
T Consensus 219 ~~~~~vl~~l~~~L~pgG~L~lG 241 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999999983899399982
No 294
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=58.86 E-value=12 Score=17.07 Aligned_cols=26 Identities=35% Similarity=0.453 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 99999999999986089828999774
Q gi|254780666|r 341 ACFQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 341 ~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
.+.|.+++++-...|+|||.|+-...
T Consensus 149 ~~~~~~vl~~l~~~L~~gG~L~lG~~ 174 (194)
T pfam01739 149 EETQRKILNRFASALKPGGYLFLGHS 174 (194)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999999999998489949998075
No 295
>TIGR02216 phage_TIGR02216 phage conserved hypothetical protein; InterPro: IPR011739 This entry describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA..
Probab=58.08 E-value=4.8 Score=20.06 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=21.0
Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHH
Q ss_conf 2110011011033328866778899
Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSA 341 (445)
Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~ 341 (445)
-|++++|=-||..||+||+.+.-..
T Consensus 10 aGl~~LRL~pe~FWRlTP~El~am~ 34 (62)
T TIGR02216 10 AGLLVLRLSPEAFWRLTPKELAAML 34 (62)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 6464433782101267868999997
No 296
>PRK07576 short chain dehydrogenase; Provisional
Probab=57.54 E-value=13 Score=16.77 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=63.1
Q ss_pred CCCEECCCCCCC-CCE--EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CCC
Q ss_conf 331003556447-000--010256841000105967987765443204887417720774457743-----------447
Q gi|254780666|r 242 NLSVLDLCAAPG-GKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KLF 307 (445)
Q Consensus 242 g~~VLD~CAAPG-GKT--~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~f 307 (445)
|+.+|=.-++-| |+. -++++.+++|+-+|.+..+++...+.++..|.. +..+..|..+...- +..
T Consensus 8 gK~alVTGgs~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~G~i 86 (260)
T PRK07576 8 GKNVFVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPE-ALGVSADVRDYAAVEAAFAAIADEFGPI 86 (260)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 998999589619999999999987999999979889999999999953994-8999931899999999999999984999
Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH----HHHHHHHHHHHCCC-CCEEEEE--ECCCCHHHCHH
Q ss_conf 668961674211001101103332886677889999----99999999986089-8289997--74788343999
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF----QRKLLLQGISFVKP-GGIVVFS--NCSLDKQDSEE 375 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~----Q~~iL~~a~~~lk~-gG~lvYs--TCSi~~eEne~ 375 (445)
|. || .|.|. ....| ....++++..+...+ -..+...+.++++. ||.+|.. +.+..+..+..
T Consensus 87 Di-LV--nnAg~--~~~~~--~~~~~~~~~~~~~~vnl~~~~~~~~~~~p~m~~~~G~IInisS~~~~~~~~~~~ 154 (260)
T PRK07576 87 DV-LV--SGAAG--NFPAP--AAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAVVAMPMQA 154 (260)
T ss_pred CE-EE--ECCCC--CCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCHH
T ss_conf 89-99--89867--89989--155999999999998646389999999999871797799998821136788718
No 297
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=57.53 E-value=13 Score=16.85 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999999999860898289997
Q gi|254780666|r 341 ACFQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 341 ~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
...|.+++.+-...|+|||+|+-.
T Consensus 238 ~~~q~~vl~~~~~~L~pgG~L~lG 261 (287)
T PRK10611 238 KTTQQEILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999999986899289983
No 298
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=57.34 E-value=7.6 Score=18.58 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCC---------HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 789999884126---------7999999996146983667615998999986432
Q gi|254780666|r 150 EWFKERLENFYG---------KERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 (445)
Q Consensus 150 ~Wl~~~~~~~~G---------~~~~~~l~~~~~~p~~l~i~~k~~~~~~~~~L~~ 195 (445)
-|.+.-+.+.+| ..+..++..++.+...+-+.-+. .-.+...++.
T Consensus 223 ~W~v~pLleklGi~V~~~~tGD~r~~ev~~aHrA~lN~v~CSks-~~nlA~~m~~ 276 (470)
T TIGR01283 223 FWLVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQCSKS-MINLARKMEE 276 (470)
T ss_pred CCCCCCHHHHCCCEEEEECCCCCCHHHHHCCCCCCEEEEECCHH-HHHHHHHHHH
T ss_conf 11001014338917999737888789984041155433575236-7889999996
No 299
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=57.03 E-value=13 Score=16.83 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=56.5
Q ss_pred CCCEECCCCCCCCCEEE--ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 33100355644700001--0256841000105967987765443204887417720774457743447668961674211
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~--l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445)
-..++.+.|-=|---.. -+-....+.|+||++...+.+++.+.. ..+.+....++.+..+||.|+. .
T Consensus 44 ikSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~lk~~~~~-----~~i~n~SIld~~~~~~~DLv~t------~ 112 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN-----INIIQGSLFDPFKDNFFDLVLT------K 112 (204)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC-----CEEEECCCCCCCCCCCEEEEEE------E
T ss_conf 8826896688477699998748744049995399999999865897-----2699653346677874238998------3
Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 001101103332886677889999999999999860
Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 (445)
Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~l 355 (445)
||+= ...|+.|. ..-.+|...+.+++
T Consensus 113 GVLI-------HinP~~L~---~vy~~l~~~s~kyi 138 (204)
T TIGR03587 113 GVLI-------HINPDNLP---TAYRELYRCSNRYI 138 (204)
T ss_pred EEEE-------EECHHHHH---HHHHHHHHHHCCEE
T ss_conf 0899-------97889999---99999998520559
No 300
>PRK07832 short chain dehydrogenase; Provisional
Probab=57.01 E-value=14 Score=16.71 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=12.6
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 25684100010596798776544320488
Q gi|254780666|r 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 (445)
Q Consensus 260 ~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~ 288 (445)
++.+.+|+.+|+++.+++.+.+.++..|.
T Consensus 21 a~~Ga~v~l~~r~~~~l~~~~~~l~~~g~ 49 (272)
T PRK07832 21 AAQGAELFLTDRDADGLAQTVADARALGG 49 (272)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 98899899998988999999999984589
No 301
>pfam06626 DUF1152 Protein of unknown function (DUF1152). This family consists of several hypothetical archaeal proteins of unknown function.
Probab=56.92 E-value=14 Score=16.70 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEC
Q ss_conf 999999999860898289997747883439998999999688741781
Q gi|254780666|r 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 (445)
Q Consensus 344 Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~ 391 (445)
|.++|++.+...+.||+| -+||+..+ ..+.++++++.||..-...
T Consensus 174 ~~~~l~~iaeia~~gG~l--g~~gl~~~-~~e~l~~~~~~~~teAS~i 218 (297)
T pfam06626 174 REYLLQRISEIAREGGLL--GIVGLDRE-DVEVLEKLLEVVVTEASAI 218 (297)
T ss_pred HHHHHHHHHHHHHCCCCC--CCCCCCHH-HHHHHHHHHHHCCCHHHHH
T ss_conf 999999999998608810--42025888-9999999998676868889
No 302
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=56.87 E-value=14 Score=16.69 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=61.9
Q ss_pred CCCCCEECCCCCCCCCEEEECC---C-C--CCHHHHHCCHHHHHHHHHHHHCCCCCCE--EEEECCCCC---CC--CCCC
Q ss_conf 2133100355644700001025---6-8--4100010596798776544320488741--772077445---77--4344
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIV---S-G--AKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFD---YC--PKKL 306 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~---~-~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~~--~~~~~D~~~---~~--~~~~ 306 (445)
.++..++++.||-+-||-+|+. . + ..-+++|||..-|+....++.....+++ .-+++|..+ +. +...
T Consensus 75 ~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~~~~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCCC
T ss_conf 89976997468872458999999985499742886517699999999874240489755888875378765420575446
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCEEEEE
Q ss_conf 766896167421100110110333288667788999999999999-9860898289997
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG-ISFVKPGGIVVFS 364 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a-~~~lk~gG~lvYs 364 (445)
--..++==|=|..|-+. +.+ ..++|.+- ...+.+||.|+-.
T Consensus 155 ~~~~l~~flGStIGNf~----------~~e-------A~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFS----------RPE-------AAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCCEEEEECCCCCCCCC----------HHH-------HHHHHHHHHHHHCCCCCEEEEC
T ss_conf 78759996165446789----------799-------9999999999725988758965
No 303
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=56.85 E-value=13 Score=16.90 Aligned_cols=38 Identities=26% Similarity=0.231 Sum_probs=16.1
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 025684100010596798776544320488741772077445
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~ 300 (445)
+++.++.|.-+|.+..+++.+.+.+ | .++.++..|..+
T Consensus 26 ~a~~Ga~V~i~~~~~~~~~~~~~~~---~-~~~~~~~~Dv~~ 63 (245)
T PRK12936 26 LHAQGAIVGLHGTRVEKLEALAAEL---G-ERVKIFPANLSD 63 (245)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHH---C-CCEEEEECCCCC
T ss_conf 9986999999829999999999983---8-966999913799
No 304
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=56.30 E-value=14 Score=16.63 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=58.5
Q ss_pred CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCCCCCCCEEEECC---CCCCCCH---HHCCCHHH----
Q ss_conf 841000105967987765443204887417720774---4577434476689616---7421100---11011033----
Q gi|254780666|r 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDA---PCSSTGT---IRRHPDVL---- 329 (445)
Q Consensus 263 ~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~---~~~~~~~~fD~iLlDa---PCSg~Gt---~rr~Pd~~---- 329 (445)
+.+|.-+|=++--...++.-++++|.. +.+ ..|+ .+......||.||.|- -.+|.-+ ||.+....
T Consensus 525 ~lrILvVEDn~iN~~V~~~~L~~lG~~-v~~-A~nG~eALe~~~~~~fDLILMDiqMP~MDG~Eatr~IR~~~~~~~~~P 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSLLEKLGNS-VDV-AMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGREDLPP 602 (779)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE-EEE-ECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 881899868899999999999975999-999-899999999850699998998289999978999999984257689992
Q ss_pred -HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf -3288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 330 -WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 330 -w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
.-+|..-+. .-| .++.. |-==|.+=-+.+++=.+++.+++...
T Consensus 603 IIALTAna~~---d~~--------~~l~a-GMdd~L~KPi~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 603 LVALTANVLK---DKQ--------EYLDA-GMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEEEECCCCH---HHH--------HHHHC-CCCCEEECCCCHHHHHHHHHHHHCCC
T ss_conf 7988187417---699--------99976-99847518898999999999984645
No 305
>PRK08862 short chain dehydrogenase; Provisional
Probab=55.85 E-value=8.9 Score=18.07 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=65.0
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--------CCCCC-
Q ss_conf 1331003556447-0000--1025684100010596798776544320488741772077445774--------34476-
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------KKLFD- 308 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--------~~~fD- 308 (445)
+|+.||=--|+.| |+++ ++++.+++|+.+|.++.+++...+.+...|.. +..+..|..+... ..+|.
T Consensus 4 k~Kv~lITGas~GIG~aiA~~~A~~Ga~Vii~~r~~~~l~~~~~~i~~~g~~-~~~~~~d~~~~~~v~~~~~~i~~~~g~ 82 (227)
T PRK08862 4 KNSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALNDTYEQCSALTDN-VYSYQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999798879999999999987999999969999999999999975897-489995166199999999999999589
Q ss_pred --EEEECCCCCCCCHHHCCCHHHHCCCHHH----HHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCCHHHCHHH
Q ss_conf --6896167421100110110333288667----7889999999999999860---898289997747883439998
Q gi|254780666|r 309 --AVLVDAPCSSTGTIRRHPDVLWTRDTDD----IVKSACFQRKLLLQGISFV---KPGGIVVFSNCSLDKQDSEEV 376 (445)
Q Consensus 309 --~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~----l~~l~~~Q~~iL~~a~~~l---k~gG~lvYsTCSi~~eEne~v 376 (445)
-||+- |-|.+.+ |......+.++ +......-.-+...++..+ +.+|.+| .++|...-.+...
T Consensus 83 ~iDvLVN--Na~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~G~II-Ni~S~~~~~~~~~ 153 (227)
T PRK08862 83 APDVLVN--NWTSSPL---PSLFDEQPSESFIQQLTSLASTLFTYGQVAAERMRKRKKKGVIV-NVISHDDHQDLTG 153 (227)
T ss_pred CCEEEEE--CCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-EEEEECCCCCCHH
T ss_conf 9749985--6645778---86334588999999999865699999999999999669987999-9976876688278
No 306
>pfam04378 DUF519 Protein of unknown function (DUF519). Bacterial family of unknown function, possibly secreted.
Probab=55.63 E-value=14 Score=16.55 Aligned_cols=136 Identities=14% Similarity=0.194 Sum_probs=76.8
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC-----CCCCCCCCEEEECCCCCCCCHHHCCCHHHHCC
Q ss_conf 1025684100010596798776544320488741772077445-----77434476689616742110011011033328
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~-----~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~ 332 (445)
+++..+-++.++|.++.-.+.|++|+.+- .++.+.+.|+.+ ..+.++=-.||+|+| --
T Consensus 74 ~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~a~lPP~~rRglVLIDPp---------------YE 136 (245)
T pfam04378 74 QLLRAQDRLVLCELHPSDYPLLKAEFAGD--RRVRVHQADGFAALKAFLPPKERRGLVLIDPP---------------FE 136 (245)
T ss_pred HHCCCCCCEEEEECCHHHHHHHHHHHCCC--CCCEEEECCHHHHHHHHCCCCCCCEEEEECCC---------------CC
T ss_conf 84896676898855979999999874558--76579936589999966899778679996798---------------66
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 86677889999999999999860898289997747883439998999999688741781376323355664345586880
Q gi|254780666|r 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 (445)
Q Consensus 333 ~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 412 (445)
..+|..+++. .|.++.+--..|=++|.--+ +..++.+.-.+.+-+...-.+....+. ..+.....+....|+
T Consensus 137 ~k~ey~~v~~----~l~~a~~r~~~g~y~iWYPi-~~~~~~~~~~~~l~~~~~~~~l~~El~---v~~~~~~~gm~GSGm 208 (245)
T pfam04378 137 LKDEYQRVVA----ALREAYKRWPTGIYAIWYPI-KDRRQVKRFYRALEGTGIRKILIIELE---VRPDSDPRGMNGSGM 208 (245)
T ss_pred CHHHHHHHHH----HHHHHHHHCCCCEEEEEEEC-CCHHHHHHHHHHHHHCCCCCEEEEEEE---ECCCCCCCCCCCEEE
T ss_conf 6569999999----99999985788379999655-874999999999985389874899999---627999999552059
Q ss_pred EEECCC
Q ss_conf 898876
Q gi|254780666|r 413 IRITPD 418 (445)
Q Consensus 413 ~r~~P~ 418 (445)
+=+.|-
T Consensus 209 ~iiNPP 214 (245)
T pfam04378 209 VVINPP 214 (245)
T ss_pred EEECCC
T ss_conf 998787
No 307
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=55.22 E-value=9.8 Score=17.76 Aligned_cols=78 Identities=14% Similarity=0.034 Sum_probs=52.6
Q ss_pred CCCCCCCCCEECCCCCCCCCEEEECCCCC-C-HHHHHCC-------HHHHHHHHHHHHCCCCC--CEEEEECCCCCCCCC
Q ss_conf 35632133100355644700001025684-1-0001059-------67987765443204887--417720774457743
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-K-VTALDVS-------KRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPK 304 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~-i~A~D~~-------~~Rl~~l~~~~~R~g~~--~~~~~~~D~~~~~~~ 304 (445)
.+...+++.-+|+.+|=|.=.+|.+...| + .+.+|+. ..-.+.++.+++-.|.+ .++++.+|..+....
T Consensus 37 ~~~l~~~dvF~DLGSGVGnvv~QaAl~tgc~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~~l~~gdFl~~~~~ 116 (205)
T pfam08123 37 KCNLGPQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIRGSFLDNERV 116 (205)
T ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH
T ss_conf 83989768899858883299999998709653888886566899999999999999999588768738997777885889
Q ss_pred ----CCCCEEEEC
Q ss_conf ----447668961
Q gi|254780666|r 305 ----KLFDAVLVD 313 (445)
Q Consensus 305 ----~~fD~iLlD 313 (445)
...|.|++.
T Consensus 117 ~~~~~~a~VI~vN 129 (205)
T pfam08123 117 EEIIPEADVILVN 129 (205)
T ss_pred HHHHCCCCEEEEE
T ss_conf 9863479889994
No 308
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=55.00 E-value=12 Score=17.24 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=34.0
Q ss_pred ECCCHHHHHHHHHHHH--CCCCCCEECCCCCCHHH----------------------CHHHHHCCCEECCCCCCCCCCCC
Q ss_conf 1599899998643210--23566111045678555----------------------85011001013463212322235
Q gi|254780666|r 182 VKFDIETWAHKLNAVM--LPTGGIRLKELPESIVS----------------------LPGFAEGVWWVQDASASIPVQLF 237 (445)
Q Consensus 182 ~k~~~~~~~~~L~~~~--~~~~~~~~~~~~~~i~~----------------------~~~f~eG~~~VQD~aSql~~~~l 237 (445)
.++..+-++++|.+.. +-+++-++.+-+..+.+ ..--+||-+.|-|+.+--.-+++
T Consensus 323 ~kPeldwyKerL~GKkv~~w~GGpklWHw~~~~EdelG~~VVavs~kFgHe~d~EK~~aR~~EGT~~iDDpNeLE~~Eii 402 (468)
T TIGR01284 323 WKPELDWYKERLRGKKVAVWSGGPKLWHWARSVEDELGLEVVAVSTKFGHEDDYEKVIARVKEGTLIIDDPNELELLEII 402 (468)
T ss_pred HCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCHHHHHH
T ss_conf 08851014654178779994686812236733132468279999875165277053557415410788579750388898
Q ss_pred CCCCCCCEE
Q ss_conf 632133100
Q gi|254780666|r 238 GTLNNLSVL 246 (445)
Q Consensus 238 ~~~~g~~VL 246 (445)
+-.+.+.||
T Consensus 403 e~~kPDiIl 411 (468)
T TIGR01284 403 ELLKPDIIL 411 (468)
T ss_pred HHHCCCEEE
T ss_conf 641888897
No 309
>PRK08589 short chain dehydrogenase; Validated
Probab=54.20 E-value=13 Score=16.76 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=6.6
Q ss_pred CHHHCHHHHHHHHHHC
Q ss_conf 8343999899999968
Q gi|254780666|r 369 DKQDSEEVVQKVLRSS 384 (445)
Q Consensus 369 ~~eEne~vV~~fL~~~ 384 (445)
.|||=-.+| .||.+.
T Consensus 222 ~peeiA~~v-~FLaSd 236 (272)
T PRK08589 222 KPEEVAKLV-VFLASD 236 (272)
T ss_pred CHHHHHHHH-HHHHCC
T ss_conf 899999999-998185
No 310
>TIGR00057 TIGR00057 Sua5/YciO/YrdC/YwlC family protein; InterPro: IPR004388 This entry includes the Sua5, YciO, YrdC and YwlC proteins. The yrdC family of genes codes for proteins that occur both independently and as a domain in proteins that have been implicated in regulation. An example for the latter case is the sua5 gene from yeast. Sua5 was identified as a suppressor of a translation initiation defect in cytochrome c and is required for normal growth in yeast . However, the function of the Sua5 protein remains unknown; Sua5 could act either at the transcriptional or the post-transcriptional levels to compensate for an aberrant translation start codon in the cyc gene. The crystal structure of the YrdC protein from Escherichia coli was determined at a resolution of 2.0 A. It structure suggests that YrdC may be a nucleic acid binding protein. An investigation of YrdC's binding affinities for single- and double-stranded RNA and DNA fragments as well as tRNAs demonstrates that YrdC binds preferentially to double-stranded RNA . .
Probab=54.16 E-value=13 Score=16.84 Aligned_cols=10 Identities=0% Similarity=0.026 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999961
Q gi|254780666|r 163 ERVLAISDAC 172 (445)
Q Consensus 163 ~~~~~l~~~~ 172 (445)
+.+..|++.+
T Consensus 80 ~~A~~Lm~~f 89 (215)
T TIGR00057 80 DDAKKLMKKF 89 (215)
T ss_pred HHHHHHHHHC
T ss_conf 5799999860
No 311
>PRK04243 50S ribosomal protein L15e; Validated
Probab=53.99 E-value=12 Score=17.15 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCCCCC-CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHH
Q ss_conf 8741772077445774-34476689616742110011011033328866
Q gi|254780666|r 288 LYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 (445)
Q Consensus 288 ~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~ 335 (445)
+.|-++.++.--.-.. -.-|..||||+-+ -+|+++|++.|-.++.
T Consensus 110 ~~nl~VLNSYwV~eDg~yK~yEVIlvDp~h---paI~~D~~~nWI~~~~ 155 (196)
T PRK04243 110 YPNLEVLNSYWVGEDGKYKWYEVILVDPHH---PAIKNDPDLNWICGKS 155 (196)
T ss_pred CCCCEEEEEEEECCCCCEEEEEEEEECCCC---HHHCCCCCCCEECCCC
T ss_conf 799688620876367754689999866887---6441187656020665
No 312
>pfam04031 Las1 Las1-like. Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth.
Probab=53.79 E-value=5.2 Score=19.80 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=25.6
Q ss_pred CCCCCCCCHHHHHHHC-CCCCCHHHHHHHCCCHHHHHH
Q ss_conf 5444443102211001-111000001231299789999
Q gi|254780666|r 119 HFAKLVNSILRRVSRE-KIELLQRIAGISIIPEWFKER 155 (445)
Q Consensus 119 ~~~~~vNAVLR~~~r~-~~~~~~~l~~~~s~P~Wl~~~ 155 (445)
.+.+|||+++...... .......++..-++|.|||+.
T Consensus 78 Ai~RfVNgl~d~~Q~~~~a~s~~~~A~~iglP~~lVdl 115 (149)
T pfam04031 78 AIIRFVNGLLDPTQQGQYAIPMRKLAKEIGLPEWFVEL 115 (149)
T ss_pred HHHHHHHHCCCHHHCCCHHCCHHHHHHHCCCCHHHHHH
T ss_conf 99999864141875541113599999883996999999
No 313
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=53.22 E-value=5.4 Score=19.67 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCC---CCCCCCCCE-EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 96798776544320488741772077445---774344766-89616742110011011033328866778899999999
Q gi|254780666|r 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDA-VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 (445)
Q Consensus 272 ~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~---~~~~~~fD~-iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~i 347 (445)
.++..+.+++++.| +.+.+....+ -.+.+.+|+ ||+|+= =| .++++ ..++
T Consensus 260 ~~~~f~~lr~~~dr-----i~~ht~sl~e~L~~~~~~s~d~~vLlD~~-------------DW-m~~~~-------~~~~ 313 (376)
T pfam11899 260 KPENFEALRAGADR-----VRIHTDSLTEVLARLPAGSLTRAVLLDAM-------------DW-MDPEQ-------LNAL 313 (376)
T ss_pred CHHHHHHHCCCCCC-----EEEEECCHHHHHHHCCCCCEEEEEECCHH-------------HC-CCHHH-------HHHH
T ss_conf 65369987088882-----59982759999973899873389970255-------------34-99999-------9999
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 999998608982899977478834
Q gi|254780666|r 348 LLQGISFVKPGGIVVFSNCSLDKQ 371 (445)
Q Consensus 348 L~~a~~~lk~gG~lvYsTCSi~~e 371 (445)
.....+.++|||+++|=|-+..+.
T Consensus 314 ~~~i~r~a~pgaRVl~Rsa~~~~~ 337 (376)
T pfam11899 314 WREITRTAAPGARVLFRSAAEPPW 337 (376)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 999999748996899833899976
No 314
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=53.04 E-value=16 Score=16.26 Aligned_cols=131 Identities=21% Similarity=0.297 Sum_probs=89.9
Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCC--CHHHHHCCHHHHHHHHHHHHCCC---CCC--EEEEECCCCCC--CC----
Q ss_conf 5632133100355644700001025684--10001059679877654432048---874--17720774457--74----
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLH---LYA--EDIIEMDAFDY--CP---- 303 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~--~i~A~D~~~~Rl~~l~~~~~R~g---~~~--~~~~~~D~~~~--~~---- 303 (445)
++....++||=..-|=||=-=..++-.. +++-+||+++=++.-|+-|..+. +.+ +++...|+.++ ..
T Consensus 71 ~~H~NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~~fl~~~Gasd 150 (284)
T TIGR00417 71 FAHPNPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGFKFLRDTGASD 150 (284)
T ss_pred HCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCHHHHHHCCCCC
T ss_conf 36898854789963888468788755981679999727478999888261210566588803589825179897615222
Q ss_pred -CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCC-HHHCHHHHHHH
Q ss_conf -3447668961674211001101103332886677889999999999999860898289997-74788-34399989999
Q gi|254780666|r 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS-NCSLD-KQDSEEVVQKV 380 (445)
Q Consensus 304 -~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs-TCSi~-~eEne~vV~~f 380 (445)
.++||.|++|-| .|.. ..+ .-.|++=-+.+.+.|+|+|++|-= +=|.. ..|=-.-+.+-
T Consensus 151 v~~~fDVIIvDst---------DPvG--------Pa~-~LF~~~Fy~~~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~r~ 212 (284)
T TIGR00417 151 VEKKFDVIIVDST---------DPVG--------PAE-TLFTKEFYELLKKALNEDGVIVAQSSESPWLQLELIKDLKRK 212 (284)
T ss_pred CCCCCCEEEEECC---------CCCC--------CCC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 2121447997277---------8956--------554-102179999999852999889980278843274888878887
Q ss_pred HHHCC
Q ss_conf 99688
Q gi|254780666|r 381 LRSSP 385 (445)
Q Consensus 381 L~~~~ 385 (445)
+++.|
T Consensus 213 ~~~~~ 217 (284)
T TIGR00417 213 VKEVP 217 (284)
T ss_pred HHHCC
T ss_conf 75268
No 315
>PRK06101 short chain dehydrogenase; Provisional
Probab=52.90 E-value=7.1 Score=18.82 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=11.5
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHH
Q ss_conf 02568410001059679877654
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRC 281 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~ 281 (445)
+++.+.+|+.++.++.+++.+.+
T Consensus 21 la~~G~~Vi~~~R~~~~l~~~~~ 43 (241)
T PRK06101 21 YAKAGWKVIACGRNEAVLDELHD 43 (241)
T ss_pred HHHCCCEEEEEECCHHHHHHHHH
T ss_conf 99879989999899999999997
No 316
>PRK08251 short chain dehydrogenase; Provisional
Probab=52.69 E-value=16 Score=16.22 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=18.9
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCC-CCCEEEEECCCCC
Q ss_conf 02568410001059679877654432048-8741772077445
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLH-LYAEDIIEMDAFD 300 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g-~~~~~~~~~D~~~ 300 (445)
+++.+..|+.++.+..+++.+.+.+.... -..+.+...|..+
T Consensus 22 la~~G~~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~~Dvsd 64 (248)
T PRK08251 22 FAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND 64 (248)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9987998999989888999999999873799739999786786
No 317
>PRK07774 short chain dehydrogenase; Provisional
Probab=52.69 E-value=16 Score=16.22 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=13.8
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 025684100010596798776544320488
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~ 288 (445)
|++.+++|+.+|++..+++.+.+.++..|.
T Consensus 26 la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~ 55 (250)
T PRK07774 26 LAREGASVVVADINAEGAERVAKQIVADGG 55 (250)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 998699999997988999999999985598
No 318
>KOG1562 consensus
Probab=52.36 E-value=16 Score=16.19 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=79.4
Q ss_pred CCCEECCCCCCCCCEEE-E-CCCCCCHHHHHCCHHHHHHHHHHHHCC--CC--CCEEEEECCCCCCC---CCCCCCEEEE
Q ss_conf 33100355644700001-0-256841000105967987765443204--88--74177207744577---4344766896
Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQ-L-IVSGAKVTALDVSKRRLEKLRCNLDRL--HL--YAEDIIEMDAFDYC---PKKLFDAVLV 312 (445)
Q Consensus 242 g~~VLD~CAAPGGKT~~-l-~~~~~~i~A~D~~~~Rl~~l~~~~~R~--g~--~~~~~~~~D~~~~~---~~~~fD~iLl 312 (445)
.++||=.--|-||=--. + ...-+.|.-+|++..=++.-+.-+.-+ |. +.+.+.-+|+..+. ..+.||.|++
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~ 201 (337)
T KOG1562 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT 201 (337)
T ss_pred CCEEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEE
T ss_conf 87479994488413011310346010675433678999999873887536789714899556899998703697418997
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 167421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
|-. .|. ..-+...|+..-.-..+.||++|+++ + ..|+..+-.+++++-
T Consensus 202 dss---------dpv---------gpa~~lf~~~~~~~v~~aLk~dgv~~----~--q~ec~wl~~~~i~e~ 249 (337)
T KOG1562 202 DSS---------DPV---------GPACALFQKPYFGLVLDALKGDGVVC----T--QGECMWLHLDYIKEG 249 (337)
T ss_pred ECC---------CCC---------CHHHHHHHHHHHHHHHHHHCCCCEEE----E--ECCEEHHHHHHHHHH
T ss_conf 167---------767---------55889888889999998517992799----7--323023779999998
No 319
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=52.09 E-value=9.5 Score=17.88 Aligned_cols=13 Identities=0% Similarity=0.000 Sum_probs=7.2
Q ss_pred CCCCCCHHHHHCC
Q ss_conf 2568410001059
Q gi|254780666|r 260 IVSGAKVTALDVS 272 (445)
Q Consensus 260 ~~~~~~i~A~D~~ 272 (445)
.+++|+++--++.
T Consensus 235 ~A~gGTLfLdeI~ 247 (457)
T PRK11361 235 RANEGTLLLDEIG 247 (457)
T ss_pred HCCCCCEECCCHH
T ss_conf 3599826314664
No 320
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=52.04 E-value=5.8 Score=19.47 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=89.1
Q ss_pred CCCEECCCCCCCCCCCCC-CCCCCCEECCCCCCCCCE-EEECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEE
Q ss_conf 010134632123222356-321331003556447000-0102568--410001059679877654432048874-17720
Q gi|254780666|r 221 GVWWVQDASASIPVQLFG-TLNNLSVLDLCAAPGGKT-AQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIE 295 (445)
Q Consensus 221 G~~~VQD~aSql~~~~l~-~~~g~~VLD~CAAPGGKT-~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~ 295 (445)
-+..|||+=-=.|--+|. +..|+.||=.-|||=|=- ...++.. ..|++.|.|+.|++. ++++|++. |++..
T Consensus 140 ~~A~iqePlGNAVhTvL~~~~~G~~vlv~GaGPiGlma~AVAKa~GA~~Vi~~d~neyRleL----Akk~Gat~~vn~~k 215 (341)
T TIGR00692 140 ELAAIQEPLGNAVHTVLESDLAGEDVLVIGAGPIGLMAVAVAKAAGARNVIVIDKNEYRLEL----AKKMGATRVVNVAK 215 (341)
T ss_pred CHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHH----HHHCCCCEEEECCC
T ss_conf 15866154110444652577688718998577478999999877278405996586479999----98709865870101
Q ss_pred CCCCC----CCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--
Q ss_conf 77445----774344766896167421100110110333288667788999999999999986089828999774788--
Q gi|254780666|r 296 MDAFD----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD-- 369 (445)
Q Consensus 296 ~D~~~----~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~-- 369 (445)
.|..+ +...+-||.+| =..=.|.-+ +..+..+.+|||+ +-=||-
T Consensus 216 Ed~~k~v~~lt~geG~Dv~l-----------------EmSGaP~A~-----------~~gL~~~~~gGR~--~~Lglpp~ 265 (341)
T TIGR00692 216 EDLVKVVAELTSGEGVDVVL-----------------EMSGAPKAL-----------EQGLDAVANGGRV--ALLGLPPS 265 (341)
T ss_pred CCHHHHHHHHCCCCCEEEEE-----------------ECCCCCHHH-----------HHHHHHHCCCCEE--EECCCCCC
T ss_conf 47689888403889647998-----------------648991799-----------9999985068808--98136897
Q ss_pred ------------------------HHHCHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf ------------------------34399989999996887417813763233
Q gi|254780666|r 370 ------------------------KQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 (445)
Q Consensus 370 ------------------------~eEne~vV~~fL~~~~~~~~~~~~~~~~~ 398 (445)
-.|+..+|.+.++++ ...|.|+--+.+
T Consensus 266 ~vtID~tNkviFKgLtI~GItGR~mfeTWy~vs~LiqS~--~ldL~PiITH~f 316 (341)
T TIGR00692 266 DVTIDLTNKVIFKGLTIKGITGRKMFETWYKVSRLIQSN--KLDLSPIITHKF 316 (341)
T ss_pred CEEEEECCCEEEEEEEEEEECCCCHHHHHHHHHHHHCCC--CCCCCCEEECCC
T ss_conf 612630374788642772000750467899999984268--835684554026
No 321
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=51.56 E-value=16 Score=16.10 Aligned_cols=88 Identities=20% Similarity=0.273 Sum_probs=51.5
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 65443204887417720774457743447668961674211001101103332886677889999999999999860898
Q gi|254780666|r 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 (445)
Q Consensus 279 l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~g 358 (445)
+...|.-.|+. +++....+..-..-+.||+|++-|| |++-.-.+.+.+..+-+.++|.. +|.
T Consensus 21 iA~~L~e~g~q-vdi~dl~~~~~~~l~~ydavVIgAs------------I~~~h~~~~~~~Fv~k~~e~L~~-----kP~ 82 (175)
T COG4635 21 IASHLRESGIQ-VDIQDLHAVEEPALEDYDAVVIGAS------------IRYGHFHEAVQSFVKKHAEALST-----KPS 82 (175)
T ss_pred HHHHHHHCCCE-EEEEEHHHHHCCCHHHCCEEEEECC------------HHHHHHHHHHHHHHHHHHHHHHC-----CCC
T ss_conf 99975541770-5653656540268411756998241------------13666689999999999999815-----986
Q ss_pred CEEEEEECCCCHH-----HCHHHHHHHHHHCCC
Q ss_conf 2899977478834-----399989999996887
Q gi|254780666|r 359 GIVVFSNCSLDKQ-----DSEEVVQKVLRSSPI 386 (445)
Q Consensus 359 G~lvYsTCSi~~e-----Ene~vV~~fL~~~~~ 386 (445)
-+||+-=.-.. |...+|++||++.|.
T Consensus 83 --A~f~vnl~a~k~k~~~e~~~yv~kfl~~~~W 113 (175)
T COG4635 83 --AFFSVNLTARKEKRTPETNSYVRKFLMKSPW 113 (175)
T ss_pred --EEEEEEHHHCCCCCCCHHHHHHHHHHHCCCC
T ss_conf --6899400112322480678999999860887
No 322
>PRK06125 short chain dehydrogenase; Provisional
Probab=51.54 E-value=16 Score=16.10 Aligned_cols=116 Identities=19% Similarity=0.104 Sum_probs=59.0
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------CCCCCEE
Q ss_conf 1331003556447-0000--1025684100010596798776544320488741772077445774-------3447668
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------KKLFDAV 310 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-------~~~fD~i 310 (445)
.|+++|=--++.| |+.. .+++.+++|+.+|.+..+++.+.+.+...+-..+.....|..+... -...|.+
T Consensus 6 ~gK~alITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~iDiL 85 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLVLAARDADALAALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL 85 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEE
T ss_conf 99989996877689999999999879989999798899999999998700986699988899999999999985899899
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHH----HHHHHHHHHHHHCCC--CCEEEE
Q ss_conf 96167421100110110333288667788999----999999999986089--828999
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC----FQRKLLLQGISFVKP--GGIVVF 363 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~----~Q~~iL~~a~~~lk~--gG~lvY 363 (445)
+--| |.....| .+..++++..+... -...+.+.+.+.++. +|.+|-
T Consensus 86 VnnA-----G~~~~~~--~~~~~~~~w~~~~~vnl~~~~~l~~~~~p~m~~~~~G~Iin 137 (259)
T PRK06125 86 VNNA-----GAIPGGS--LDDVDDAAWRAGWELKVFGYINLTRLFYPRMKARGSGVIVN 137 (259)
T ss_pred EECC-----CCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9768-----7789986--45499999999999863437889999999765349819999
No 323
>PRK11054 helD DNA helicase IV; Provisional
Probab=51.50 E-value=7.8 Score=18.50 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC-CEEECCCCCCCCCC
Q ss_conf 99999998608982899977478834399989999996887-41781376323355
Q gi|254780666|r 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKS 400 (445)
Q Consensus 346 ~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~-~~~~~~~~~~~~~~ 400 (445)
.+|+.-....+++..+. .-+-.+ ..--+++++...+.|. .+++..+....+..
T Consensus 548 ~~l~~l~~~~~~~~~vl-lL~R~~-~~~p~~l~~~~~r~p~L~i~~~TiHaSKGLE 601 (684)
T PRK11054 548 ALLDKLSGYAKPEERIL-LLARYH-HLKPASLEKAATRWPKLQIDFMTIHASKGQQ 601 (684)
T ss_pred HHHHHHHHCCCCCCEEE-EEHHHH-CCCHHHHHHHHHHCCCCCEEEEEHHHHCCCC
T ss_conf 99999973269987599-830000-1380799999974868876999613311765
No 324
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=51.15 E-value=10 Score=17.69 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=7.2
Q ss_pred CCCCCCHHHHHCC
Q ss_conf 2568410001059
Q gi|254780666|r 260 IVSGAKVTALDVS 272 (445)
Q Consensus 260 ~~~~~~i~A~D~~ 272 (445)
.+++|.++--|+.
T Consensus 231 ~A~gGTLfLdeI~ 243 (441)
T PRK10365 231 EADGGTLFLDEIG 243 (441)
T ss_pred ECCCCEECCCCCC
T ss_conf 8899825502315
No 325
>PRK09134 short chain dehydrogenase; Provisional
Probab=51.13 E-value=14 Score=16.59 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999996089999999
Q gi|254780666|r 48 LVRAIVNVTLRFLPRIDAVL 67 (445)
Q Consensus 48 ~~~~Lv~gvlR~~~~ld~il 67 (445)
-+.+++-.+..+.+.||-++
T Consensus 73 ~~~~~v~~~~~~~G~iDiLV 92 (256)
T PRK09134 73 QVRALVARASAALGPITLLV 92 (256)
T ss_pred HHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999829987899
No 326
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=50.23 E-value=4.2 Score=20.53 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=10.8
Q ss_pred CCEEEECCCCCCCC
Q ss_conf 76689616742110
Q gi|254780666|r 307 FDAVLVDAPCSSTG 320 (445)
Q Consensus 307 fD~iLlDaPCSg~G 320 (445)
||.|++|.|=+-+-
T Consensus 40 yD~iiIDtpp~~~~ 53 (104)
T cd02042 40 YDYIIIDTPPSLGL 53 (104)
T ss_pred CCEEEEECCCCCCH
T ss_conf 88899979499989
No 327
>PRK12937 short chain dehydrogenase; Provisional
Probab=49.95 E-value=17 Score=15.93 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=17.3
Q ss_pred ECCCCCCHHH-HHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 0256841000-10596798776544320488741772077445
Q gi|254780666|r 259 LIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 (445)
Q Consensus 259 l~~~~~~i~A-~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~ 300 (445)
+++.+..|+. ...+..+.+.+.+.++..|.. +..+..|..+
T Consensus 25 la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~ 66 (245)
T PRK12937 25 LAADGFAVAVNYAGSAAMADELVEEIEAAGGR-AIAVQADVAD 66 (245)
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHHHHCCCC-EEEEECCCCC
T ss_conf 99879999997699868999999999965995-8999837899
No 328
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=49.77 E-value=16 Score=16.12 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=67.2
Q ss_pred CCCCEEE--------ECCCCC---CHHHHHCCHH-HHHHHHHHHHCCCCCCEE-EEE-CC---CCCC-------CCCCCC
Q ss_conf 4700001--------025684---1000105967-987765443204887417-720-77---4457-------743447
Q gi|254780666|r 252 PGGKTAQ--------LIVSGA---KVTALDVSKR-RLEKLRCNLDRLHLYAED-IIE-MD---AFDY-------CPKKLF 307 (445)
Q Consensus 252 PGGKT~~--------l~~~~~---~i~A~D~~~~-Rl~~l~~~~~R~g~~~~~-~~~-~D---~~~~-------~~~~~f 307 (445)
-+||||- +.+..+ =++|+|++.. -++.|+.--++.|+.-.. .-. .+ +.+. .....|
T Consensus 112 GsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~ 191 (439)
T TIGR00959 112 GSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQALEEAKENGF 191 (439)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88578899999999999863897034032103478999999976752887110047888988778999999999997489
Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 6689616742110011011033328866778899999999999998608982899977478834399989999
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445)
|.||||-= -|...+++=.++|..+-. .++|. .++|..=++.=+|=-++-+.|
T Consensus 192 D~vI~DTA------------GRL~ID~~LM~EL~~iK~--------~~nP~-EiLlVvDaM~GQdAvn~A~~F 243 (439)
T TIGR00959 192 DVVIVDTA------------GRLQIDEELMEELAEIKE--------ILNPD-EILLVVDAMTGQDAVNTAKTF 243 (439)
T ss_pred CEEEEECC------------CCHHHHHHHHHHHHHHHH--------HHCCC-EEEECCHHCCHHHHHHHHHHH
T ss_conf 78997267------------512555999999999988--------86887-054122010216999999863
No 329
>PTZ00243 ABC transporter; Provisional
Probab=49.32 E-value=18 Score=15.86 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=82.7
Q ss_pred HCCCEECCCCCCCC------C--CCCCCCCCCCEECCCCCCCCCEEEEC------C-CCCC--HHHHHCCHHHHHHHHHH
Q ss_conf 00101346321232------2--23563213310035564470000102------5-6841--00010596798776544
Q gi|254780666|r 220 EGVWWVQDASASIP------V--QLFGTLNNLSVLDLCAAPGGKTAQLI------V-SGAK--VTALDVSKRRLEKLRCN 282 (445)
Q Consensus 220 eG~~~VQD~aSql~------~--~~l~~~~g~~VLD~CAAPGGKT~~l~------~-~~~~--i~A~D~~~~Rl~~l~~~ 282 (445)
.|.+..+|.+-.-- - .-+...||++|==+..---|||+.++ + .+|. |..+|++.--++.++.+
T Consensus 1306 ~G~IeF~nVs~rYr~~lp~VLk~Isf~I~pGEKVGIVGRTGSGKSSLi~aLfRl~e~~~G~I~IDGvDIs~i~L~~LRs~ 1385 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHH
T ss_conf 84399998899728999871057469988999999987987439999999970327788989997998202898999850
Q ss_pred HHCCCCCCEEEE------ECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 320488741772------07744577434476689616742110011011033328866778899999999999998608
Q gi|254780666|r 283 LDRLHLYAEDII------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 (445)
Q Consensus 283 ~~R~g~~~~~~~------~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk 356 (445)
+.=...+ ..+. |-|...-..++.--.+|=. |---..+...|+-.-..=.+.=..++.=|+|+|.=|-.+|+
T Consensus 1386 isIIPQd-PvLFsGTIR~NLDP~~e~sD~eIw~ALe~--v~L~~~V~s~~~gLdt~V~egG~NlS~GQRQLlcLARALLr 1462 (1560)
T PTZ00243 1386 FSMIPQD-PVLFDGTVRQNVDPFLEASSAEVWAALEL--VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred CEEECCC-CCEECCCHHHHCCCCCCCCHHHHHHHHHH--CCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8488978-82078668987299889999999999998--58877774176788887027990178999999999999975
Q ss_pred CCCEEEE---EECCCCHHHCHHHHHHHHHHCC
Q ss_conf 9828999---7747883439998999999688
Q gi|254780666|r 357 PGGIVVF---SNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 357 ~gG~lvY---sTCSi~~eEne~vV~~fL~~~~ 385 (445)
++-.++- +|-|+.+ |++.+|++.+.+.-
T Consensus 1463 r~skILlLDEATAsvD~-~TD~lIQ~tIr~~F 1493 (1560)
T PTZ00243 1463 KGSGFILMDEATANIDP-ALDRQIQATVMSAF 1493 (1560)
T ss_pred CCCCEEEEECCCCCCCH-HHHHHHHHHHHHHH
T ss_conf 79987998782105898-99999999999982
No 330
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.97 E-value=18 Score=15.82 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCCEEEEC------CCCC---CHHHHHCC-HHHHHHHHHHHHCCCCCCEEEEECCCCC-------CCCCCCCCEEEECCC
Q ss_conf 70000102------5684---10001059-6798776544320488741772077445-------774344766896167
Q gi|254780666|r 253 GGKTAQLI------VSGA---KVTALDVS-KRRLEKLRCNLDRLHLYAEDIIEMDAFD-------YCPKKLFDAVLVDAP 315 (445)
Q Consensus 253 GGKT~~l~------~~~~---~i~A~D~~-~~Rl~~l~~~~~R~g~~~~~~~~~D~~~-------~~~~~~fD~iLlDaP 315 (445)
-|||+-++ ..++ -++|.|.. ..-.+.|+...+++|+.-... .|... +.....+|.||+|-.
T Consensus 86 ~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~--~~~~~~~~~~~~~~~~~~~DvilIDTA 163 (270)
T PRK06731 86 VGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV--RDEAAMTRALTYFKEEARVDYILIDTA 163 (270)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECC--CCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 988999999999998679908999838888889999999999819953545--887899999999999769999999799
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 42110011011033328866778899999999999998608982899977478834399989999
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445)
+|+ ..+.+-+.++.+ ....++|.=.+...-.|+..++-.++.+.|
T Consensus 164 -------GR~-----~~d~~lm~el~~--------~~~~~~p~~~~Lvldas~~~~~~~~~~~~f 208 (270)
T PRK06731 164 -------GKN-----YRASETVEEMIE--------TMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred -------CCC-----CCCHHHHHHHHH--------HHCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf -------987-----146999999999--------860638987999986877769999999980
No 331
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.38 E-value=18 Score=15.76 Aligned_cols=146 Identities=21% Similarity=0.173 Sum_probs=80.7
Q ss_pred CHHHHHCCC-EECCCCCCCCCCCCCCCCCCCEECCCCCCCC-CEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 850110010-1346321232223563213310035564470-000--102568410001059679877654432048874
Q gi|254780666|r 215 LPGFAEGVW-WVQDASASIPVQLFGTLNNLSVLDLCAAPGG-KTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 (445)
Q Consensus 215 ~~~f~eG~~-~VQD~aSql~~~~l~~~~g~~VLD~CAAPGG-KT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~ 290 (445)
-.+|-.|++ .|....+..++.+-.|..|+.+|=--|+.|- .+. .|+..+++|++.|+.... +.+.+-..++|...
T Consensus 179 ~sa~v~gq~~~v~~~~~~~~~~~~~pL~GKVALVTGAArGIG~AIA~~LAreGA~VVi~Di~~a~-~~l~~~a~elgg~a 257 (447)
T PRK08261 179 RSAYVSGQVVRVGAADAAPPADWDRPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPQAG-DDLAAVAARLGGTA 257 (447)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHHHHHHCCCEE
T ss_conf 63311253899638988898887888999989991725789999999999869999998271148-99999998709808
Q ss_pred EEEEECCCCCCCC--------CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH----HHHHHHHHHH--HCC
Q ss_conf 1772077445774--------3447668961674211001101103332886677889999----9999999998--608
Q gi|254780666|r 291 EDIIEMDAFDYCP--------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF----QRKLLLQGIS--FVK 356 (445)
Q Consensus 291 ~~~~~~D~~~~~~--------~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~----Q~~iL~~a~~--~lk 356 (445)
+ ..|.++... ...|.+ +|.=..+-|..+..| .+..++++..+...+ +..+-+.+.. ..+
T Consensus 258 l---~~DVt~~~a~~~lv~~~~~~~G~--lDILVnNAGi~~~~~--l~~~~~e~Wd~v~~vNl~g~~~l~qall~~m~~~ 330 (447)
T PRK08261 258 L---ALDITAPDAPAKIAEHLAERHGG--LDIVVHNAGITRDKT--LANMDEARWDSVIAVNLLAPLRITEALLDNGALG 330 (447)
T ss_pred E---EECCCCHHHHHHHHHHHHHHCCC--CCEEEECCCCCCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9---95368999999999999996499--989998997899977--1119999999999998699999999999977654
Q ss_pred CCCEEEEEECCCC
Q ss_conf 9828999774788
Q gi|254780666|r 357 PGGIVVFSNCSLD 369 (445)
Q Consensus 357 ~gG~lvYsTCSi~ 369 (445)
.||.+|.. +|+.
T Consensus 331 ~gG~IVnI-sSia 342 (447)
T PRK08261 331 DGGRIVCV-SSIS 342 (447)
T ss_pred CCCEEEEE-CCEE
T ss_conf 79579985-0200
No 332
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=48.35 E-value=13 Score=16.77 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHCCCCE
Q ss_conf 9998999999688741
Q gi|254780666|r 373 SEEVVQKVLRSSPIPV 388 (445)
Q Consensus 373 ne~vV~~fL~~~~~~~ 388 (445)
|..+++..|++....+
T Consensus 836 Nq~VL~~~L~~LG~~V 851 (947)
T PRK10841 836 NRRLLADQLGSLGYQC 851 (947)
T ss_pred HHHHHHHHHHHCCCEE
T ss_conf 9999999999769999
No 333
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=47.57 E-value=14 Score=16.62 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=61.1
Q ss_pred CCCCCCCCEE-CCCCCCCCCEEE---ECCCCCCHHHHHCCHHHHHHHHHHH------------HCCCCCCEEEEECCCCC
Q ss_conf 5632133100-355644700001---0256841000105967987765443------------20488741772077445
Q gi|254780666|r 237 FGTLNNLSVL-DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL------------DRLHLYAEDIIEMDAFD 300 (445)
Q Consensus 237 l~~~~g~~VL-D~CAAPGGKT~~---l~~~~~~i~A~D~~~~Rl~~l~~~~------------~R~g~~~~~~~~~D~~~ 300 (445)
|...++.+|+ =+| |||.- |++.+-.|+.+|+|+..++.+-+.. ++....++.|.++|..+
T Consensus 39 L~~~~~~rVfVPLC----GKSlDm~WLa~qG~~VvGvELse~Av~~FF~E~~l~~~v~~~~~~~~y~~~~I~i~~GD~F~ 114 (226)
T PRK13256 39 LNINDSSVCLIPMC----GCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HCCCCCCEEEEECC----CCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCEEECCCCCEEEECCCEEEEECCCCC
T ss_conf 48899986999678----87898999997898256431018999999997699845513788128851887699636215
Q ss_pred CCC----CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 774----344766896167421100110110333288667788999999999999986089828999774788343
Q gi|254780666|r 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 (445)
Q Consensus 301 ~~~----~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE 372 (445)
+.. -+.||.|.==| ..--+.++.=.++ ..+-.+++++|++++-.|=..-+++
T Consensus 115 L~~~~~~lg~~daiYDRA-------------ALVALP~~mR~~Y-------a~~L~~ll~~~~~~LLitl~Y~q~~ 170 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRG-------------AYIALPNDLRTNY-------AKMMLEVCSNNTQILLLVMEHDKKS 170 (226)
T ss_pred CCCHHCCCCCCCEEEEEH-------------HHHCCCHHHHHHH-------HHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 862011576403697402-------------2531998999999-------9999986587770999998647545
No 334
>pfam05711 TylF Macrocin-O-methyltransferase (TylF). This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex.
Probab=47.57 E-value=19 Score=15.67 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCCC--CEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87765443204887--4177207744577434476689616742110011011033328866778899999999999998
Q gi|254780666|r 276 LEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 (445)
Q Consensus 276 l~~l~~~~~R~g~~--~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~ 353 (445)
++..++|+.|.|+. ++.++.+...+-.+ ++|-.-.-.+ +++ -|+. +--+..|++..+
T Consensus 143 ~e~Vk~Nf~~~~l~dd~V~fikG~f~DTLp---------~~~~~~Ia~l--------rlD-~D~Y---eSt~~~Le~lyp 201 (249)
T pfam05711 143 LETVRENFARYGLLDDQVRFLPGWFKDTLP---------TAPIERLAVL--------RLD-GDLY---ESTMDALTNLYP 201 (249)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCHHHHCC---------CCCCCCEEEE--------EEE-CCCH---HHHHHHHHHHHC
T ss_conf 999999999706885451795565232015---------4884527899--------952-4311---889999999734
Q ss_pred HCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEC
Q ss_conf 60898289997747883439998999999688741781
Q gi|254780666|r 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 (445)
Q Consensus 354 ~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~ 391 (445)
.|.|||.++---.-+ +..-.-|..|.++|.....+.
T Consensus 202 kl~~GG~iiiDDY~~--~gcr~Av~ef~~~~~i~~~l~ 237 (249)
T pfam05711 202 KLSPGGFVIVDDYCI--PACRQAVHDYRDRHGITDPIH 237 (249)
T ss_pred CCCCCCEEEEECCCC--HHHHHHHHHHHHHCCCCCCCE
T ss_conf 068882899926896--679999999999629987717
No 335
>pfam08399 VWA_N VWA N-terminal. This domain is found at the N-terminus of proteins containing von Willebrand factor type A (VWA, pfam00092) and Cache (pfam02743) domains. It has been found in vertebrates, Drosophila and C. elegans but has not yet been identified in other eukaryotes. It is probably involved in the function of some voltage-dependent calcium channel subunits.
Probab=46.87 E-value=5.6 Score=19.60 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=9.5
Q ss_pred CCCCCHHHCCCHHHH
Q ss_conf 421100110110333
Q gi|254780666|r 316 CSSTGTIRRHPDVLW 330 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w 330 (445)
||.+|.+|.-|-++|
T Consensus 109 GS~tG~~R~yPa~~W 123 (123)
T pfam08399 109 GSATGFFRYYPATKW 123 (123)
T ss_pred ECCCCCEEECCCCCC
T ss_conf 067533022568789
No 336
>PRK05855 short chain dehydrogenase; Validated
Probab=46.87 E-value=19 Score=15.59 Aligned_cols=128 Identities=17% Similarity=0.120 Sum_probs=74.3
Q ss_pred CCCCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------
Q ss_conf 321331003556447-0000--10256841000105967987765443204887417720774457743-----------
Q gi|254780666|r 239 TLNNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----------- 304 (445)
Q Consensus 239 ~~~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----------- 304 (445)
...|+.++=--||-| |+.+ .+++.+++|+..|+++..++...+.++..|.. ......|..+...-
T Consensus 312 rFsGKvAvVTGA~sGIGrA~A~~fA~~GA~Vvl~Dr~~~~l~eta~ei~~~G~~-a~~~~~DVtd~~av~al~~~v~~~~ 390 (582)
T PRK05855 312 RFGGKLVVVTGAGSGIGRATALAFAREGAEVVASDIDEAAAERTAALIRAAGAV-AHAYRVDVSDADAMEALAEWVGAEH 390 (582)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 749958999587578999999999977999999607999999999999951984-8999755899999999999999976
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHH----HHHHHHHHH-CC--CCCEEE--EEECCCCHHHCH
Q ss_conf 44766896167421100110110333288667788999999----999999986-08--982899--977478834399
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR----KLLLQGISF-VK--PGGIVV--FSNCSLDKQDSE 374 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~----~iL~~a~~~-lk--~gG~lv--YsTCSi~~eEne 374 (445)
+..|.++-.|=-+..|.+- ..++++.++...+-. -....+.+. ++ .||.|| =|..++.+.-+.
T Consensus 391 G~iDILVNNAGI~~~g~~~-------d~s~e~w~~v~dVNl~Gv~~~~ra~lp~M~~rg~gG~IVNiSSiag~~~~p~~ 462 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFL-------DTSAEEWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSL 462 (582)
T ss_pred CCCCEEEECCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCC
T ss_conf 9999999898758997803-------29999999999886499999999999999964998089996786457789886
No 337
>PRK07109 short chain dehydrogenase; Provisional
Probab=46.78 E-value=19 Score=15.59 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9889999999999999608999999999
Q gi|254780666|r 42 SQRDQILVRAIVNVTLRFLPRIDAVLDF 69 (445)
Q Consensus 42 ~~~Dr~~~~~Lv~gvlR~~~~ld~il~~ 69 (445)
+-.|..-+.+++-.+....+.||-+++.
T Consensus 65 DVsd~~~v~~~~~~~~~~~G~IDvlVNN 92 (338)
T PRK07109 65 DVADAEAVQAAADRAEEELGPIDTWVNN 92 (338)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 1799999999999999984998888654
No 338
>KOG3178 consensus
Probab=46.30 E-value=20 Score=15.53 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=66.3
Q ss_pred CCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCHH
Q ss_conf 31003556447000010256841000105967987765443204887417720774457743447668961674211001
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI 322 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~ 322 (445)
...+|+.+|-|-=+-+++..-..|-.++.+..-+-....++. -|+. -+-.|..+- ..+-|.|+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~gV~---~v~gdmfq~--~P~~daI~----------- 241 (342)
T KOG3178 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PGVE---HVAGDMFQD--TPKGDAIW----------- 241 (342)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHC-CCCC---EECCCCCCC--CCCCCEEE-----------
T ss_conf 668875874769999999758877255147899985223206-7865---123645345--88767599-----------
Q ss_pred HCCCHHHHC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 101103332---886677889999999999999860898289997747
Q gi|254780666|r 323 RRHPDVLWT---RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 323 rr~Pd~~w~---~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445)
++|- .+-+|. .+||.++++.|+|||.++-.-|=
T Consensus 242 -----mkWiLhdwtDedc-------vkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178 242 -----MKWILHDWTDEDC-------VKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred -----EEEECCCCCHHHH-------HHHHHHHHHHCCCCCEEEEEECC
T ss_conf -----8700056876889-------99999999858998889998356
No 339
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.21 E-value=20 Score=15.52 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCCH
Q ss_conf 7899998841267
Q gi|254780666|r 150 EWFKERLENFYGK 162 (445)
Q Consensus 150 ~Wl~~~~~~~~G~ 162 (445)
.|.++++.+..|-
T Consensus 187 ~~~i~~lL~~mGi 199 (421)
T cd01976 187 AWASRILLEEMGL 199 (421)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999998398
No 340
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=46.04 E-value=13 Score=16.81 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=10.1
Q ss_pred CEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 2899977478834399989999996
Q gi|254780666|r 359 GIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 359 G~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
+..+|- -....|.-+-+.+.+=+
T Consensus 322 ~~~i~~--~~~d~~ta~~~S~~lG~ 344 (384)
T cd01126 322 GVRLFF--AVNDYETARYISKLLGT 344 (384)
T ss_pred CCEEEE--CCCCHHHHHHHHHHHCC
T ss_conf 849992--58998999999998397
No 341
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=45.96 E-value=8.6 Score=18.17 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=9.9
Q ss_pred CCCEEEECCCCCCC
Q ss_conf 47668961674211
Q gi|254780666|r 306 LFDAVLVDAPCSST 319 (445)
Q Consensus 306 ~fD~iLlDaPCSg~ 319 (445)
..|.+|+|=|||++
T Consensus 162 ePeVlLlDEPTSAL 175 (248)
T TIGR00972 162 EPEVLLLDEPTSAL 175 (248)
T ss_pred CCCEECCCCCCCCC
T ss_conf 88521057888757
No 342
>PRK06181 short chain dehydrogenase; Provisional
Probab=45.80 E-value=20 Score=15.48 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=23.2
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 025684100010596798776544320488741772077445
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~ 300 (445)
+++.+.+|+.+|.++.+++.+.+.++..|.. +..+..|..+
T Consensus 21 la~~Ga~vvl~~r~~~~l~~~~~~l~~~g~~-~~~~~~Dvs~ 61 (263)
T PRK06181 21 LARAGARLVLAARNEERLASLAQELANYGAE-ALVVATDVSD 61 (263)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCC
T ss_conf 9987998999988999999999999954996-7999807999
No 343
>PRK07677 short chain dehydrogenase; Provisional
Probab=45.79 E-value=20 Score=15.48 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=56.0
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCCC
Q ss_conf 10256841000105967987765443204887417720774457743-----------4476689616742110011011
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHP 326 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~P 326 (445)
+|++.+++|+.+|.+..+++.+.+.++..|.. +..+..|..+...- +..|.++--| | |.++ .|
T Consensus 22 ~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~-~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVnNA---g-~~~~-~~ 95 (254)
T PRK07677 22 RFAEEGANVVITGRTKEKLEEAKLEIEQFPGQ-VLTVQMDVRNPDDVQKMIEQIDEKFGRIDALINNA---A-GNFI-CP 95 (254)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC---C-CCCC-CC
T ss_conf 99987999999969999999999999856990-99998038999999999999999839988899757---5-5778-88
Q ss_pred HHHHCCCHHHHHHHHHHH----HHHHHHHHHH-CC--CCCEEEEE--ECCCCHHHC
Q ss_conf 033328866778899999----9999999986-08--98289997--747883439
Q gi|254780666|r 327 DVLWTRDTDDIVKSACFQ----RKLLLQGISF-VK--PGGIVVFS--NCSLDKQDS 373 (445)
Q Consensus 327 d~~w~~~~~~l~~l~~~Q----~~iL~~a~~~-lk--~gG~lvYs--TCSi~~eEn 373 (445)
-. ..++++.++...+- .-+...+.+. .+ .+|.+|.. +.+..+..+
T Consensus 96 ~~--~~t~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~~G~IInisS~~~~~~~~~ 149 (254)
T PRK07677 96 AE--DLSVNGWKSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGAG 149 (254)
T ss_pred HH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 26--5999999999999723188999999999998289953999951100568898
No 344
>PRK04333 50S ribosomal protein L14e; Validated
Probab=45.46 E-value=10 Score=17.62 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=17.2
Q ss_pred CEEEECCCCCCCCHHHCCCHHHH
Q ss_conf 66896167421100110110333
Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLW 330 (445)
Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w 330 (445)
.++|+|-|.+ ||+.|+.--++|
T Consensus 31 nrvLVdGP~~-tgV~R~~~n~k~ 52 (83)
T PRK04333 31 NFVLVTGPGL-NGVKRRRCNIKH 52 (83)
T ss_pred CEEEEECCCC-CCCEEEEEECCC
T ss_conf 8799889977-895006760220
No 345
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=44.75 E-value=12 Score=17.09 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHHCCC
Q ss_conf 59679877654432048
Q gi|254780666|r 271 VSKRRLEKLRCNLDRLH 287 (445)
Q Consensus 271 ~~~~Rl~~l~~~~~R~g 287 (445)
-++.-.+.+...+++.|
T Consensus 8 Dd~~i~~~l~~~L~~~G 24 (229)
T COG0745 8 DDPELAELLKEYLEEEG 24 (229)
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 88899999999998759
No 346
>PRK07791 short chain dehydrogenase; Provisional
Probab=44.47 E-value=19 Score=15.59 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=5.6
Q ss_pred HHHCHHHHHHHHHHC
Q ss_conf 343999899999968
Q gi|254780666|r 370 KQDSEEVVQKVLRSS 384 (445)
Q Consensus 370 ~eEne~vV~~fL~~~ 384 (445)
|||=-..| -||.+.
T Consensus 227 PedIA~~v-~FLaSd 240 (285)
T PRK07791 227 PENVSPLV-VWLGSA 240 (285)
T ss_pred HHHHHHHH-HHHCCC
T ss_conf 99999999-998174
No 347
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=44.39 E-value=7.7 Score=18.57 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=10.4
Q ss_pred CCEEEECCCCCCCC
Q ss_conf 76689616742110
Q gi|254780666|r 307 FDAVLVDAPCSSTG 320 (445)
Q Consensus 307 fD~iLlDaPCSg~G 320 (445)
||.|++|.|-.-..
T Consensus 45 ~D~viiD~~aG~~~ 58 (139)
T cd02038 45 YDYIIIDTGAGISD 58 (139)
T ss_pred CCEEEEECCCCCCH
T ss_conf 99999948999877
No 348
>PRK07062 short chain dehydrogenase; Provisional
Probab=43.78 E-value=21 Score=15.27 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=13.0
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHC
Q ss_conf 025684100010596798776544320
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDR 285 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R 285 (445)
+++.+++|+.+|.+..+++...+.+..
T Consensus 28 la~~Ga~Vvi~~r~~~~l~~~~~~l~~ 54 (265)
T PRK07062 28 LLEAGASVAICGRDEERLASAEARLRE 54 (265)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 998799999997988999999999987
No 349
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA; InterPro: IPR014072 The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases..
Probab=43.61 E-value=14 Score=16.63 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=28.4
Q ss_pred ECCCCCCCCCCCCCC--CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHH
Q ss_conf 346321232223563--2133100355644700001025684100010596798776
Q gi|254780666|r 225 VQDASASIPVQLFGT--LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKL 279 (445)
Q Consensus 225 VQD~aSql~~~~l~~--~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l 279 (445)
+|-.=+..|+.++.+ +.|+ |. .++|+||.+.|-=+.-.|. |.+||.+|
T Consensus 111 ~~a~KA~vPvYI~P~D~k~G~-V~--T~lP~gk~L~L~~r~~DVe----~v~kL~~M 160 (176)
T TIGR02699 111 IQALKAKVPVYIMPSDYKEGT-VK--TALPDGKKLELRMRKVDVE----NVEKLAQM 160 (176)
T ss_pred HHHCCCCCCEEECCCCCCCCE-EE--EECCCCCEEEEEEEEECHH----HHHHHHHH
T ss_conf 963168744686278898325-89--8569896168987641202----46887651
No 350
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=43.49 E-value=16 Score=16.11 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=69.0
Q ss_pred CCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEE--EECCCCCCC-------------CCC
Q ss_conf 31003556447000010--2568410001059679877654432048874177--207744577-------------434
Q gi|254780666|r 243 LSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC-------------PKK 305 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~--~~~D~~~~~-------------~~~ 305 (445)
..+|=+.-|--|||+.+ |..+--++.+|.|++=|. |.+||.| ...|...+. ...
T Consensus 14 ~~~lIYG~~G~GKTS~~K~l~GktL~l~~D~SSkVL~---------G~~nvdiim~~~d~~~~~~~~~e~~~~~~~~~~~ 84 (229)
T TIGR01618 14 FRYLIYGKPGLGKTSTIKYLPGKTLVLSLDKSSKVLA---------GDENVDIIMADLDDEKPIQEMVEFYKELQNIQAE 84 (229)
T ss_pred CEEEEECCCCCCCCCEEEECCCCEEEEECCCCCCCCC---------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHH
T ss_conf 3688875898872305664588789883678644346---------8998338998606998478999999997322534
Q ss_pred CCCEEEECCCCCCCCHHHCCCH--HHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEE
Q ss_conf 4766896167421100110110--33328866778899999999999998608-982899977
Q gi|254780666|r 306 LFDAVLVDAPCSSTGTIRRHPD--VLWTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVVFSN 365 (445)
Q Consensus 306 ~fD~iLlDaPCSg~Gt~rr~Pd--~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk-~gG~lvYsT 365 (445)
.||-|.+|==.+=--.|=-+-+ .| .........+.++|.-+|+-..=+.. ++-. ||.|
T Consensus 85 ~Y~niViDNis~lq~~~L~~~gr~~K-~~~~p~~q~Y~~~~~~~~d~~~vl~~l~~~~-i~~t 145 (229)
T TIGR01618 85 EYDNIVIDNISELQKLWLINLGREAK-NGRSPELQHYQKLDLYFLDLLTVLKELKNKN-IYVT 145 (229)
T ss_pred CCCEEEEECHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEE
T ss_conf 57658981427899999984684424-5788650003688899999999998558987-9998
No 351
>PRK07814 short chain dehydrogenase; Provisional
Probab=43.38 E-value=22 Score=15.22 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=10.7
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 2568410001059679877654432048
Q gi|254780666|r 260 IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 (445)
Q Consensus 260 ~~~~~~i~A~D~~~~Rl~~l~~~~~R~g 287 (445)
++.++.|+.++.++.+++.+.+.++..|
T Consensus 31 a~~Ga~V~i~~~~~~~l~~~~~~i~~~g 58 (263)
T PRK07814 31 AEAGADVLIAARTESQLDEVAEQIRAAG 58 (263)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9879989999698999999999998529
No 352
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=43.36 E-value=22 Score=15.22 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCCCCCCCCEECCCCCCCCC---EEEECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC---CCC----CCCCC
Q ss_conf 35632133100355644700---001025-68410001059679877654432048874177207---744----57743
Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGK---TAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM---DAF----DYCPK 304 (445)
Q Consensus 236 ~l~~~~g~~VLD~CAAPGGK---T~~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~---D~~----~~~~~ 304 (445)
....++|++||= .+|.||= ..||+. .+.++++.+.++.|.+. ++++|... +++. |.. .+...
T Consensus 135 ~~~~~~g~~vLi-~gaaGgVG~~avQlAk~~Ga~Vi~t~~s~~k~e~----~~~lGA~~--vi~~~~~~~~~~i~~~t~g 207 (327)
T PRK10754 135 TYEIKPDEQFLF-HAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQR----ALKAGAWQ--VINYREENIVERVKEITGG 207 (327)
T ss_pred CCCCCCCCEEEE-ECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHH----HHHCCCCE--EEECCCCCHHHHHHHHHCC
T ss_conf 137899999999-8177611268999999869999999898999999----99669999--9989999999999998689
Q ss_pred CCCCEEEECCC
Q ss_conf 44766896167
Q gi|254780666|r 305 KLFDAVLVDAP 315 (445)
Q Consensus 305 ~~fD~iLlDaP 315 (445)
..+|.|+ |+-
T Consensus 208 ~gvdvv~-D~v 217 (327)
T PRK10754 208 KKVRVVY-DSV 217 (327)
T ss_pred CCCEEEE-ECC
T ss_conf 9836999-898
No 353
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=43.03 E-value=22 Score=15.19 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=7.2
Q ss_pred CCCCHHHHHCCHHHHHHHHHH
Q ss_conf 684100010596798776544
Q gi|254780666|r 262 SGAKVTALDVSKRRLEKLRCN 282 (445)
Q Consensus 262 ~~~~i~A~D~~~~Rl~~l~~~ 282 (445)
.+..|+.+|.+..+++.+.+.
T Consensus 25 ~Ga~V~i~~~~~~~~~~~~~~ 45 (259)
T PRK12384 25 EGYRVAVADINSEKAANVAQE 45 (259)
T ss_pred CCCEEEEEECCHHHHHHHHHH
T ss_conf 799999997988999999999
No 354
>PRK07454 short chain dehydrogenase; Provisional
Probab=42.63 E-value=22 Score=15.14 Aligned_cols=109 Identities=14% Similarity=0.064 Sum_probs=57.3
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCCC
Q ss_conf 10256841000105967987765443204887417720774457743-----------4476689616742110011011
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHP 326 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~P 326 (445)
.+++.+.+|+.++.+..+++.+.+.+...|.+ +.....|..+...- +..|.++--|=+...|.
T Consensus 25 ~la~~G~~V~l~~R~~~~l~~~~~e~~~~g~~-~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnNAG~~~~~~----- 98 (241)
T PRK07454 25 AFAKAGWDLALVARSQDALEALAEELRSTGVK-VAAYSIDLSNPEAIAPGIAELLEQFGCPSVLINNAGAAYTGP----- 98 (241)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC-----
T ss_conf 99987998999989999999999999965992-899995189999999999999997599889998898899999-----
Q ss_pred HHHHCCCHHHHHHHHHH----HHHHHHHHHHHC--CCCCEEE--EEECCCCHHHCH
Q ss_conf 03332886677889999----999999999860--8982899--977478834399
Q gi|254780666|r 327 DVLWTRDTDDIVKSACF----QRKLLLQGISFV--KPGGIVV--FSNCSLDKQDSE 374 (445)
Q Consensus 327 d~~w~~~~~~l~~l~~~----Q~~iL~~a~~~l--k~gG~lv--YsTCSi~~eEne 374 (445)
.+..+.++.++...+ ...+...+.+.+ +.+|.+| =|+.+..+.-+.
T Consensus 99 --~~~~~~e~~~~~~~vNl~g~~~~~~~~lp~M~~~~~G~IinisS~ag~~~~~~~ 152 (241)
T PRK07454 99 --LLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSHAARNAFPQW 152 (241)
T ss_pred --HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCC
T ss_conf --266999999999999869999999999999997399899998356544778997
No 355
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=42.47 E-value=9.3 Score=17.94 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=42.9
Q ss_pred HHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE-----CC----CCCCHHHHHCCHHHHHHHHHHHHC-CC
Q ss_conf 110010134632123222356321331003556447000010-----25----684100010596798776544320-48
Q gi|254780666|r 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----IV----SGAKVTALDVSKRRLEKLRCNLDR-LH 287 (445)
Q Consensus 218 f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l-----~~----~~~~i~A~D~~~~Rl~~l~~~~~R-~g 287 (445)
-.+|...|.|+|+.+...--.+.+|..|- |.=-|...+.+ .. ...+-++.-++.+|+..+-.-++| +|
T Consensus 261 ~~~GL~~V~nPS~~Fl~~~~~~~~Gs~v~--~~~EGsRpllvEiQALv~~s~~~~PrR~~~G~d~~Rl~ml~AVlek~~~ 338 (372)
T cd01121 261 RENGLREVSNPSELFLSEREEDVPGSAVT--VVMEGSRPLLVEVQALVSPTSYANPRRVAVGFDPNRLSMLLAVLEKRLG 338 (372)
T ss_pred CCCCCEECCCHHHHHHHCCCCCCCCCEEE--EEEECCCCEEEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 16870563685698862698888863799--8874046505662202057888999656736788889999999999739
Q ss_pred C
Q ss_conf 8
Q gi|254780666|r 288 L 288 (445)
Q Consensus 288 ~ 288 (445)
+
T Consensus 339 ~ 339 (372)
T cd01121 339 L 339 (372)
T ss_pred C
T ss_conf 9
No 356
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=42.40 E-value=12 Score=17.16 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=8.7
Q ss_pred CEEEECCC-CCC
Q ss_conf 66896167-421
Q gi|254780666|r 308 DAVLVDAP-CSS 318 (445)
Q Consensus 308 D~iLlDaP-CSg 318 (445)
.++|||-| |||
T Consensus 35 nRvLVDGP~~tg 46 (130)
T PTZ00065 35 TRVLVDGAFITG 46 (130)
T ss_pred CEEEECCCCCCC
T ss_conf 646740876678
No 357
>PRK08265 short chain dehydrogenase; Provisional
Probab=42.20 E-value=22 Score=15.10 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=7.4
Q ss_pred CCCCCCHHHHHCCHHHHHHH
Q ss_conf 25684100010596798776
Q gi|254780666|r 260 IVSGAKVTALDVSKRRLEKL 279 (445)
Q Consensus 260 ~~~~~~i~A~D~~~~Rl~~l 279 (445)
++.+++|+.+|++..+.+.+
T Consensus 27 a~~Ga~V~i~~~~~~~~~~~ 46 (261)
T PRK08265 27 VAAGACVAILDIDADNGAAV 46 (261)
T ss_pred HHCCCEEEEEECCHHHHHHH
T ss_conf 98799899997988999999
No 358
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=41.88 E-value=23 Score=15.06 Aligned_cols=16 Identities=25% Similarity=0.298 Sum_probs=6.6
Q ss_pred CHHHCHHHHHHHHHHCC
Q ss_conf 83439998999999688
Q gi|254780666|r 369 DKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 369 ~~eEne~vV~~fL~~~~ 385 (445)
.|||=-+.| .||.+.|
T Consensus 208 ~PedVA~av-~fl~s~p 223 (248)
T PRK10538 208 TPEDVSEAV-WWVATLP 223 (248)
T ss_pred CHHHHHHHH-HHHHCCC
T ss_conf 999999999-9998299
No 359
>KOG1014 consensus
Probab=41.48 E-value=23 Score=15.02 Aligned_cols=17 Identities=6% Similarity=0.065 Sum_probs=8.1
Q ss_pred CCCCEECCCCCCCCCEE
Q ss_conf 13310035564470000
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTA 257 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~ 257 (445)
....|+-+-+..|-...
T Consensus 178 ~~G~IvnigS~ag~~p~ 194 (312)
T KOG1014 178 KKGIIVNIGSFAGLIPT 194 (312)
T ss_pred CCCEEEEECCCCCCCCC
T ss_conf 88669982263355667
No 360
>PRK08628 short chain dehydrogenase; Provisional
Probab=41.44 E-value=22 Score=15.20 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=5.6
Q ss_pred CHHHCHHHHHHHHHH
Q ss_conf 834399989999996
Q gi|254780666|r 369 DKQDSEEVVQKVLRS 383 (445)
Q Consensus 369 ~~eEne~vV~~fL~~ 383 (445)
.|+|=-+.|. ||.+
T Consensus 220 ~p~eiA~~v~-FL~S 233 (258)
T PRK08628 220 TAEEIADTAV-FLLS 233 (258)
T ss_pred CHHHHHHHHH-HHHC
T ss_conf 9999999999-9958
No 361
>PRK12746 short chain dehydrogenase; Provisional
Probab=41.14 E-value=23 Score=14.98 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=47.5
Q ss_pred ECCCCCCH-HHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCC----EEEECCCCCCCCHHHCC
Q ss_conf 02568410-00105967987765443204887417720774457743--------4476----68961674211001101
Q gi|254780666|r 259 LIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFD----AVLVDAPCSSTGTIRRH 325 (445)
Q Consensus 259 l~~~~~~i-~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD----~iLlDaPCSg~Gt~rr~ 325 (445)
|++.+..| ++++.+..+++.+.+.++..+.. +.++..|..+...- .+|. .-=+|.=...-|+....
T Consensus 26 la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~~~~~g~g~iDiLVnnAg~~~~~ 104 (254)
T PRK12746 26 LANDGALVAIHYGRNKAAADETIREIESNGGK-AFLIEADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQG 104 (254)
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC
T ss_conf 99879999996599989999999999855992-89997577999999999999999986641689851899799788999
Q ss_pred CHHHHCCCHHHHHHHHHH----HHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 103332886677889999----99999999986089828999774
Q gi|254780666|r 326 PDVLWTRDTDDIVKSACF----QRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 326 Pd~~w~~~~~~l~~l~~~----Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
| ....++++......+ ..-+...+.++++.+|.+|..+.
T Consensus 105 ~--~~~~~~~~~~~~~~vNl~~~f~~~k~~~p~m~~~G~IVnisS 147 (254)
T PRK12746 105 T--IENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred C--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9--144999999999998534689999999999861696699924
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=40.95 E-value=14 Score=16.51 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=66.5
Q ss_pred CCCCEEEEC------CCCCC---HHHHH-CCHHHHHHHHHHHHCCCCCCEEEE-E-CCCCC-------CCCCCCCCEEEE
Q ss_conf 470000102------56841---00010-596798776544320488741772-0-77445-------774344766896
Q gi|254780666|r 252 PGGKTAQLI------VSGAK---VTALD-VSKRRLEKLRCNLDRLHLYAEDII-E-MDAFD-------YCPKKLFDAVLV 312 (445)
Q Consensus 252 PGGKT~~l~------~~~~~---i~A~D-~~~~Rl~~l~~~~~R~g~~~~~~~-~-~D~~~-------~~~~~~fD~iLl 312 (445)
-.|||+=++ ...|+ |-|.| -...-+++|+.-.+|+|+.-|.-. - +|+-. ......+|.||+
T Consensus 92 G~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~Ak~~niDvvli 171 (284)
T TIGR00064 92 GVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQAAKARNIDVVLI 171 (284)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88601028899999987499089982752479999999998988387554078898871789999899998749978997
Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 167421100110110333288667788999999999999986089828999774788343999899999
Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445)
Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445)
|== -|...+..-+++|.++-|=+ .+..+.=.|. ..+-.==++.=+-.-.|++.|=
T Consensus 172 DTA------------GRLqnk~NLm~EL~KI~RV~-~k~~~~~aP~-e~lLVlDAt~Gqna~~QA~~F~ 226 (284)
T TIGR00064 172 DTA------------GRLQNKVNLMDELKKIKRVI-KKVDPVDAPD-EVLLVLDATTGQNALEQAKVFN 226 (284)
T ss_pred ECC------------CCCCCCHHHHHHHHHHHHHH-HHHHCCCCCC-EEEEEEHHHHHHHHHHHHHHHH
T ss_conf 347------------54546620399999999987-3210257875-5754220222030899999986
No 363
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=40.41 E-value=7.9 Score=18.45 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=12.7
Q ss_pred HHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 0001231299789999884126
Q gi|254780666|r 140 QRIAGISIIPEWFKERLENFYG 161 (445)
Q Consensus 140 ~~l~~~~s~P~Wl~~~~~~~~G 161 (445)
..+...|..|.|-...|+..|-
T Consensus 171 ~~LT~~yt~P~~aC~t~~~ly~ 192 (216)
T TIGR03652 171 RELTNDYTPPEDACNTWRALYS 192 (216)
T ss_pred HHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9987579899544899999999
No 364
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=40.17 E-value=15 Score=16.33 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=32.4
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 10001059679877654432048874177207744577434476689616742110
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~G 320 (445)
+|.-+|.+....+.+...+.+.|+.. .......-.....||.+++|.|.+..-
T Consensus 538 ~vlvve~~~~~~~~l~~~L~~~g~~v---~~~~~~~~l~~~~~D~~li~~~~~~~~ 590 (920)
T PRK11107 538 RLLYVEPNSLAAQATLDLLSETPLEV---TYSPTLSQLPEAHYDYLLLGCPVTFRE 590 (920)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEE---EECCCHHHHHCCCCCEEEECCCCCCCC
T ss_conf 69997697789999999999749645---751788775136888799616666654
No 365
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=39.82 E-value=17 Score=15.90 Aligned_cols=18 Identities=17% Similarity=0.147 Sum_probs=9.4
Q ss_pred HCCCHHHHHHHHHHHHHH
Q ss_conf 328866778899999999
Q gi|254780666|r 330 WTRDTDDIVKSACFQRKL 347 (445)
Q Consensus 330 w~~~~~~l~~l~~~Q~~i 347 (445)
.|-..+|+..|+.-..+-
T Consensus 311 LReR~eDI~~L~~~fl~~ 328 (469)
T PRK10923 311 LRERREDIPRLARHFLQV 328 (469)
T ss_pred HHHCHHHHHHHHHHHHHH
T ss_conf 544653499999999999
No 366
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=39.78 E-value=24 Score=14.84 Aligned_cols=10 Identities=20% Similarity=0.116 Sum_probs=5.5
Q ss_pred CCEECCCCCC
Q ss_conf 1013463212
Q gi|254780666|r 222 VWWVQDASAS 231 (445)
Q Consensus 222 ~~~VQD~aSq 231 (445)
+++|.|.+..
T Consensus 233 fi~V~D~~~a 242 (338)
T PRK10675 233 YIHVMDLADG 242 (338)
T ss_pred CEEHHHHHHH
T ss_conf 3318779999
No 367
>KOG2352 consensus
Probab=39.53 E-value=25 Score=14.81 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCCCCCCCEE----EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--------CCCCCCCEEEECCC
Q ss_conf 5564470000----10256841000105967987765443204887417720774457--------74344766896167
Q gi|254780666|r 248 LCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--------CPKKLFDAVLVDAP 315 (445)
Q Consensus 248 ~CAAPGGKT~----~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~--------~~~~~fD~iLlDaP 315 (445)
+|-|+||-.+ |..-....++|+++.+.-++....+..+..-.-..+...|+..+ ..+..||.+++|+-
T Consensus 300 lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvd 379 (482)
T KOG2352 300 LVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVD 379 (482)
T ss_pred EEEECCCCCCCCCEEEECCCCCEEEEEECHHHHHCCHHHHCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf 99832877540020020573411599978168405576525356552200373035999998615644668757999778
Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEECCCCHHHCHHHHHHH
Q ss_conf 42110011011033328866778899999999999998608982899-977478834399989999
Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-YsTCSi~~eEne~vV~~f 380 (445)
-+-++-+.--|-. -++ ...|.++-..+.|-|..+ --.| =...=+.++...+
T Consensus 380 s~d~~g~~~pp~~-------fva------~~~l~~~k~~l~p~g~f~inlv~-r~~~~~~~~~~~l 431 (482)
T KOG2352 380 SKDSHGMQCPPPA-------FVA------QVALQPVKMILPPRGMFIINLVT-RNSSFKDEVLMNL 431 (482)
T ss_pred CCCCCCCCCCCHH-------HHH------HHHHHHHHHCCCCCCEEEEEEEC-CCCCHHHHHHHHH
T ss_conf 9985667289647-------878------99988776106866348998753-8842319999756
No 368
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=39.51 E-value=25 Score=14.81 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH--HCHH
Q ss_conf 44577434476689616742110011011033328866778899999999999998608982899977478834--3999
Q gi|254780666|r 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ--DSEE 375 (445)
Q Consensus 298 ~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e--Ene~ 375 (445)
+..+.+...+|. +|=|||||. |+.| +..-.+ | --.+-.|...|..|--+| .-.|.+.. .|-.
T Consensus 76 aE~igp~~~~D~-lvIAPaTaN-tiaK---LAnGI~--D--------tpV~maaka~Lrn~kPVv-ia~stNd~l~~n~~ 139 (195)
T PRK08305 76 AEPLGPKKPLDC-MVIAPCTGN-TMAK---LANGIT--D--------SPVLMAAKATLRNQKPVV-LAISTNDALGLNAV 139 (195)
T ss_pred CEECCCCCCCCE-EEEECCCHH-HHHH---HHCCCC--C--------CHHHHHHHHHHCCCCCEE-EEEECCHHHHHCHH
T ss_conf 513366763368-999007541-8999---865355--8--------779999999862799889-99836867876899
Q ss_pred HHHHHHHHCCCCEEECCC
Q ss_conf 899999968874178137
Q gi|254780666|r 376 VVQKVLRSSPIPVELVPL 393 (445)
Q Consensus 376 vV~~fL~~~~~~~~~~~~ 393 (445)
.+...|..- .+.++|-
T Consensus 140 Ni~~Ll~~k--niyfvPf 155 (195)
T PRK08305 140 NLGRLLNTK--NIYFVPF 155 (195)
T ss_pred HHHHHHHCC--CEEEEEC
T ss_conf 999998269--7899956
No 369
>PRK09581 pleD response regulator PleD; Reviewed
Probab=39.34 E-value=15 Score=16.29 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.7
Q ss_pred CHHHCHHHHHHHHH
Q ss_conf 83439998999999
Q gi|254780666|r 369 DKQDSEEVVQKVLR 382 (445)
Q Consensus 369 ~~eEne~vV~~fL~ 382 (445)
..++-+.+.++++.
T Consensus 383 ~~~~a~~vaeri~~ 396 (457)
T PRK09581 383 DIEVAIAVAERIRR 396 (457)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999999
No 370
>KOG3987 consensus
Probab=39.25 E-value=15 Score=16.43 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 13310035564470000102568410001059679877654432048874177207744577434476689616742110
Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 (445)
Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~G 320 (445)
...++||+.||-|--|.++..---+|+|.|.|.. |+.+++..+......+ +.. ..+-+||.|++ .-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~t----Mr~rL~kk~ynVl~~~--ew~--~t~~k~dli~c------lN 177 (288)
T KOG3987 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWT----MRDRLKKKNYNVLTEI--EWL--QTDVKLDLILC------LN 177 (288)
T ss_pred CCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHH----HHHHHHHCCCCEEEEH--HHH--HCCCEEEHHHH------HH
T ss_conf 8706886167886100121421899999876699----9999865277366500--333--13722315888------77
Q ss_pred HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEE
Q ss_conf 0110110333288667788999999999999986089-8289997
Q gi|254780666|r 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFS 364 (445)
Q Consensus 321 t~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~-gG~lvYs 364 (445)
.+-|+= + -.++|+.-...+.| +|++|-+
T Consensus 178 lLDRc~------~----------p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987 178 LLDRCF------D----------PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHC------C----------HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 887506------7----------6779999999846478848999
No 371
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=38.76 E-value=13 Score=16.82 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.3
Q ss_pred HCHHHHHHHHHHCC
Q ss_conf 39998999999688
Q gi|254780666|r 372 DSEEVVQKVLRSSP 385 (445)
Q Consensus 372 Ene~vV~~fL~~~~ 385 (445)
||-..|.+||++||
T Consensus 308 ~NA~kVA~fL~~Hp 321 (434)
T TIGR01326 308 ENALKVAEFLEAHP 321 (434)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999972788
No 372
>PRK07035 short chain dehydrogenase; Provisional
Probab=38.72 E-value=25 Score=14.72 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=9.4
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 56841000105967987765443204
Q gi|254780666|r 261 VSGAKVTALDVSKRRLEKLRCNLDRL 286 (445)
Q Consensus 261 ~~~~~i~A~D~~~~Rl~~l~~~~~R~ 286 (445)
+.+.+|+.+|.+..+++.+.+.++..
T Consensus 30 ~~Ga~V~i~~r~~~~l~~~~~~i~~~ 55 (252)
T PRK07035 30 QQGAHVIVSSRKLDGCQAVADAIVAA 55 (252)
T ss_pred HCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 87998999979889999999999964
No 373
>pfam01834 XRCC1_N XRCC1 N terminal domain.
Probab=38.69 E-value=17 Score=16.01 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEE--E-CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC--C
Q ss_conf 463212322235632133100355644700001--0-2568410001059679877654432048874177207744--5
Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--L-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--D 300 (445)
Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~--l-~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~--~ 300 (445)
||..-- +..+|...++.++. ||.+|-|++. | ++.-..|..+||-- .|.--|++.++-.. .
T Consensus 14 ed~~h~-a~NLL~~~~~rkW~--~~~~gek~~~VilQle~~~~I~~IDIGN------------~gSAfIEVlVgrS~~~~ 78 (152)
T pfam01834 14 QDSTHC-AENLLKADTYRKWR--AAKAGEKTISVVLQLEKEEQIHSVDIGN------------DGSAFVEVLVGSSAGGG 78 (152)
T ss_pred CCCCCC-HHHCCCCCCCCCCE--ECCCCCCEEEEEEEECCCEEEEEEEECC------------CCEEEEEEEEEECCCCC
T ss_conf 888874-44413788778413--2269972589999957833864697358------------87089999974046888
Q ss_pred CCCCCCCCEEEE
Q ss_conf 774344766896
Q gi|254780666|r 301 YCPKKLFDAVLV 312 (445)
Q Consensus 301 ~~~~~~fD~iLl 312 (445)
+..+..|-.+|+
T Consensus 79 ~~~~~~f~~Ll~ 90 (152)
T pfam01834 79 TAGEQDYEVLLV 90 (152)
T ss_pred CCCCCCEEEEEE
T ss_conf 767777068974
No 374
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=38.59 E-value=25 Score=14.71 Aligned_cols=137 Identities=18% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCEECCCCCCCCCEE--EECC---CCC------------CHHHH--HCCH----HHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 310035564470000--1025---684------------10001--0596----79877654432048874177207744
Q gi|254780666|r 243 LSVLDLCAAPGGKTA--QLIV---SGA------------KVTAL--DVSK----RRLEKLRCNLDRLHLYAEDIIEMDAF 299 (445)
Q Consensus 243 ~~VLD~CAAPGGKT~--~l~~---~~~------------~i~A~--D~~~----~Rl~~l~~~~~R~g~~~~~~~~~D~~ 299 (445)
+.+.=-|-|=|.-+. .+|. ++| .|+.+ +.+. ...+.+.+.++..|+ .+. .|-+
T Consensus 253 ~~~~~ts~GistR~iga~Im~H~Dd~GlvlPp~iAP~qVvIvPi~~~~~~~~v~~~~~~i~~~L~~~gi---rv~-~Ddr 328 (478)
T PRK08661 253 EYVHQTSWGVSTRLIGALIMVHGDDKGLVLPPKIAPIQVVIIPILKKKEEEEVLEYAKELAEELKAAGI---RVK-LDDR 328 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCE---EEE-EECC
T ss_conf 678875345427899999998479986517845598308999845788789999999999999987790---799-8176
Q ss_pred CCCCCCCC-CEEEECCCC----------CCCCHH-HCCCHHHHCCCHHHHH-----HHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 57743447-668961674----------211001-1011033328866778-----899999999999998608982899
Q gi|254780666|r 300 DYCPKKLF-DAVLVDAPC----------SSTGTI-RRHPDVLWTRDTDDIV-----KSACFQRKLLLQGISFVKPGGIVV 362 (445)
Q Consensus 300 ~~~~~~~f-D~iLlDaPC----------Sg~Gt~-rr~Pd~~w~~~~~~l~-----~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445)
+..+..+| |..|.-+|. +|+-++ ||+.--|...+-+++. .|..+|..|+++|..+++.+ ++
T Consensus 329 d~~pG~Kf~~~elkGvPlRieiGprDle~~~v~v~RRDt~eK~~v~~~~l~~~v~~lL~~Iq~~L~~kA~~~~~~~--~~ 406 (478)
T PRK08661 329 DKTPGWKFYEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVSLDELVEEVPELLDEIQENLYEKAKEFREEN--TV 406 (478)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHCCCEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--EE
T ss_conf 6566566666101478589997720102897999986798614665999999999999999999999999999839--78
Q ss_pred EEECCCCHHHCHHHHHHHHHHCCCCEEECCC
Q ss_conf 9774788343999899999968874178137
Q gi|254780666|r 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 (445)
Q Consensus 363 YsTCSi~~eEne~vV~~fL~~~~~~~~~~~~ 393 (445)
+ -+|-+-...+++.+.+++. .|.
T Consensus 407 ~-------v~t~eEfk~~l~~k~G~v~-~pw 429 (478)
T PRK08661 407 E-------VDTLEEFKEAIEEKGGFVL-APW 429 (478)
T ss_pred E-------CCCHHHHHHHHHHCCCEEE-EEC
T ss_conf 8-------5889999999973898999-972
No 375
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=37.28 E-value=26 Score=14.57 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 99999999999998608982899977478834399989999
Q gi|254780666|r 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 340 l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445)
-+.-+..++..++..++--|.|+|.-|| ..|.-....+.
T Consensus 32 ~a~~~Lk~~~~~A~~ikG~GT~~~vDC~--d~e~kKLCKKl 70 (112)
T cd03067 32 SAEALLKLLSDVAQAVKGQGTIAWIDCG--DSESRKLCKKL 70 (112)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECC--CCHHHHHHHHH
T ss_conf 8788999999999984472169999737--60778888887
No 376
>PRK06500 short chain dehydrogenase; Provisional
Probab=36.81 E-value=27 Score=14.52 Aligned_cols=116 Identities=21% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCCCEECCCCCCC-CCE-E-EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCE
Q ss_conf 1331003556447-000-0-10256841000105967987765443204887417720774457743--------44766
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKT-A-QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDA 309 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT-~-~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~ 309 (445)
.|+++|=.-|+.| |+. + .+++.++.|+.+|+++.+++...+.+ |- +...+..|..+...- +.|.+
T Consensus 5 ~gK~~lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l---~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFAAEGARVAITGRDAATLEAARAEL---GE-DALVIRNDAGSVAAQRALAQALAEAGGR 80 (249)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---CC-CEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 9988999376878999999999987999999969989999999985---89-7599995179999999999999997699
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHH----HHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 896167421100110110333288667788999----9999999999860898289997
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC----FQRKLLLQGISFVKPGGIVVFS 364 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~----~Q~~iL~~a~~~lk~gG~lvYs 364 (445)
+|.=..+-|.....| ....++++..+... -..-+...+.++++.+|.+|..
T Consensus 81 --iDiLvnnAG~~~~~~--~~~~~~e~w~~~~~vNl~~~f~~~~~~~p~m~~~g~iI~~ 135 (249)
T PRK06500 81 --LDAVFINAGVAKFAP--LEDWDEAMFDRSFNTNVKGPYFLIQALLPLLNNPASIVLN 135 (249)
T ss_pred --CCEEEECCCCCCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf --989998998789999--1669999999999986456999999999986229818998
No 377
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=36.51 E-value=27 Score=14.48 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 999999999986089828999774
Q gi|254780666|r 343 FQRKLLLQGISFVKPGGIVVFSNC 366 (445)
Q Consensus 343 ~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445)
.|.++|...-..++.+|.=||.|.
T Consensus 318 ~~~~~L~~iG~Wl~~ngEaIYgTr 341 (384)
T smart00812 318 EEEERLLEIGKWLKVNGEAIYGTR 341 (384)
T ss_pred HHHHHHHHHHHHHHHCCCCEECCC
T ss_conf 999999999999985753032577
No 378
>KOG2414 consensus
Probab=36.04 E-value=28 Score=14.43 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCEEEECCCCCCCCHHH---C--CCHHHHCCCHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 76689616742110011---0--11033328866778-899999999999998
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIR---R--HPDVLWTRDTDDIV-KSACFQRKLLLQGIS 353 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~r---r--~Pd~~w~~~~~~l~-~l~~~Q~~iL~~a~~ 353 (445)
=|.||+||-|+-.|-.. | -+..+|.--+.+|. -+..+|++++..+.+
T Consensus 307 ~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~ 359 (488)
T KOG2414 307 DEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKP 359 (488)
T ss_pred CCEEEEECCCCCCCEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 84799945744586671440016787832707899999999999999986158
No 379
>PRK07479 consensus
Probab=35.78 E-value=28 Score=14.40 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=17.3
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 025684100010596798776544320488741772077445
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~ 300 (445)
|++.+.+|+-+|+++.+++.+.+.++..|- ++..+..|.++
T Consensus 25 la~~G~~V~i~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~ 65 (252)
T PRK07479 25 FAREGAKVVVADLNAAAAERVASEIADAGG-NAIAVAADVSR 65 (252)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf 998799999997989999999999985399-78999925899
No 380
>PRK13435 response regulator; Provisional
Probab=35.38 E-value=27 Score=14.52 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=62.2
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCEEEECC--C--CCCCCHHHC---CCHHHHC-CC
Q ss_conf 100010596798776544320488741772077---44577434476689616--7--421100110---1103332-88
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDA--P--CSSTGTIRR---HPDVLWT-RD 333 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D---~~~~~~~~~fD~iLlDa--P--CSg~Gt~rr---~Pd~~w~-~~ 333 (445)
+|.-+|=+..=...++..++..|...+.+ ..+ +........+|.||+|. | .||.-..|+ +|++..- .|
T Consensus 3 RILIVEDe~~i~~~l~~~L~~~G~~vv~~-A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~~~~ipvI~lT 81 (141)
T PRK13435 3 RVLIVEDEALIALELEKLLEEAGHQVVGI-ASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSIDGGVEVIFMT 81 (141)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 89998998999999999999879979997-59999999997659998999788789999899999999875998389997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 6677889999999999999860898289997747883439998999999688
Q gi|254780666|r 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 334 ~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
-. .+..... .. |-.=|.+=-+.++|=...|++.++++-
T Consensus 82 a~---------~d~~~~~----~a-GA~dyl~KPf~~~eL~~ai~~~~~rr~ 119 (141)
T PRK13435 82 AN---------PERVGHD----FA-GALGVIAKPYSLRQVARALSYVAARRV 119 (141)
T ss_pred CC---------HHHHHHH----HC-CCCCEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 77---------9986013----45-998589899998999999999997156
No 381
>PRK11823 DNA repair protein RadA; Provisional
Probab=35.31 E-value=13 Score=16.83 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=43.8
Q ss_pred HHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE-----CC----CCCCHHHHHCCHHHHHHHHHHHHC-CC
Q ss_conf 110010134632123222356321331003556447000010-----25----684100010596798776544320-48
Q gi|254780666|r 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----IV----SGAKVTALDVSKRRLEKLRCNLDR-LH 287 (445)
Q Consensus 218 f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l-----~~----~~~~i~A~D~~~~Rl~~l~~~~~R-~g 287 (445)
-.+|...|.|+|..+...--...+|..|- |.=-|...+.+ .. ...+=++.-++.+|+..+-.-+++ +|
T Consensus 268 ~~~GL~~v~nPS~~Fls~~~~~~~Gs~i~--~~~EGsRpllvEvQALv~~~~~~~PrR~~~G~d~~Rl~mllAVlek~~~ 345 (454)
T PRK11823 268 TEKGLREVSNPSELFLSERDENVPGSAVT--VTMEGTRPLLVEIQALVSPSSFGNPRRVAVGLDQNRLAMLLAVLEKRLG 345 (454)
T ss_pred CCCCCEECCCHHHHHHHCCCCCCCCEEEE--EEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 16884566887799862688787750799--8885064240103446156778887157805878999999999999849
Q ss_pred C
Q ss_conf 8
Q gi|254780666|r 288 L 288 (445)
Q Consensus 288 ~ 288 (445)
+
T Consensus 346 ~ 346 (454)
T PRK11823 346 L 346 (454)
T ss_pred C
T ss_conf 8
No 382
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=35.24 E-value=20 Score=15.48 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=61.0
Q ss_pred EECCCCCC--CCCEEE---E----CCCCCCHHHHHCCHHHHH-HHHHHHHCCCCCC--EEEEECC-CCCC------CCCC
Q ss_conf 00355644--700001---0----256841000105967987-7654432048874--1772077-4457------7434
Q gi|254780666|r 245 VLDLCAAP--GGKTAQ---L----IVSGAKVTALDVSKRRLE-KLRCNLDRLHLYA--EDIIEMD-AFDY------CPKK 305 (445)
Q Consensus 245 VLD~CAAP--GGKT~~---l----~~~~~~i~A~D~~~~Rl~-~l~~~~~R~g~~~--~~~~~~D-~~~~------~~~~ 305 (445)
|+=+|..- -|||+. | ++.+.+|.-+|.++.+-- .-.++..|-|..+ ..+...+ ...+ ....
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~~ 82 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQ 82 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHC
T ss_conf 79996189987699999999999997899599996899868899998765258988775234056525789999887536
Q ss_pred CCCEEEECCCCCCCCHHHCC---CH---HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEECCCC--HHHCHHH
Q ss_conf 47668961674211001101---10---3332886677889999999999999860898-28999774788--3439998
Q gi|254780666|r 306 LFDAVLVDAPCSSTGTIRRH---PD---VLWTRDTDDIVKSACFQRKLLLQGISFVKPG-GIVVFSNCSLD--KQDSEEV 376 (445)
Q Consensus 306 ~fD~iLlDaPCSg~Gt~rr~---Pd---~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~g-G~lvYsTCSi~--~eEne~v 376 (445)
.||.|++|-|=+.+-..+.= -| +.-.-++-|+..-.++=+.|.+.. +..++. -.-|--|.+-. ..--+..
T Consensus 83 ~~D~VIIDtpg~~s~~~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~i~~~~-~~~~~~ip~~vlltRv~a~~~t~~~~~ 161 (231)
T PRK13849 83 GFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELL-LSENLAIPTAILRQRVPVGRLTTSQRA 161 (231)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCEEEEEEECCHHHHCHHHHH
T ss_conf 9988998189977589999999789899779998667999999999999999-972878865666540504540688999
Q ss_pred HHHHHHHCC
Q ss_conf 999999688
Q gi|254780666|r 377 VQKVLRSSP 385 (445)
Q Consensus 377 V~~fL~~~~ 385 (445)
|+..|++-|
T Consensus 162 i~~~le~lP 170 (231)
T PRK13849 162 MSDMLESLP 170 (231)
T ss_pred HHHHHHCCC
T ss_conf 999996299
No 383
>KOG1269 consensus
Probab=35.20 E-value=28 Score=14.44 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=24.1
Q ss_pred HHHHHHHHCCCCC-EEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 9999998608982-89997747883439998999999688
Q gi|254780666|r 347 LLLQGISFVKPGG-IVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 347 iL~~a~~~lk~gG-~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
+-..-...++++| .++++.|=..|+=..++= +++...+
T Consensus 295 ~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~-~~~~~~~ 333 (364)
T KOG1269 295 LFRGRVATLKPGGKVLILEYIRGLPEGSSDFA-KYIAQAA 333 (364)
T ss_pred HHHHHHHCCCCCCEEEEHHHCCCCCCCCCHHH-HHHHHHH
T ss_conf 77767651476746871443076776760689-9987502
No 384
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=35.06 E-value=8.8 Score=18.13 Aligned_cols=46 Identities=30% Similarity=0.375 Sum_probs=36.2
Q ss_pred CCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHC
Q ss_conf 2133100355644700001025684-100010596798776544320
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDR 285 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R 285 (445)
-.|+.|||+.+--||=|--++++++ +|+|+|+....+.---+.-+|
T Consensus 76 vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~~kLR~D~R 122 (240)
T TIGR00478 76 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDER 122 (240)
T ss_pred ECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCE
T ss_conf 37868997056730489999870584677786032133432363662
No 385
>pfam08903 DUF1846 Domain of unknown function (DUF1846). This family of proteins are functionally uncharacterized. Some members of the family are annotated as ATP-dependent peptidases. However, we can find no support for this annotation.
Probab=34.99 E-value=29 Score=14.31 Aligned_cols=69 Identities=14% Similarity=-0.032 Sum_probs=29.6
Q ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC----CCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4320488741772077445774344766896167421----10011011033328866778899999999999998
Q gi|254780666|r 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS----TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 (445)
Q Consensus 282 ~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg----~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~ 353 (445)
..+..|....-+.-.|++....+.. =|++|+-+. +-.+.-=||-..-++|+-++-.+.+-.+.|.+--.
T Consensus 349 ~a~~t~~pa~AieL~DG~iiTGKtS---~Llgasaa~lLNAlK~La~I~~~i~lisp~~iepIq~LK~~~Lgs~np 421 (491)
T pfam08903 349 KAEETGSPAAAIELPDGTIVTGKTS---ELLGASSAVLLNALKHLAGIDDEIHLISPEIIEPIQKLKTKYLGSKNP 421 (491)
T ss_pred HHHHHCCCEEEEEECCCCEEECCCC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 9998689869999389877868886---543658999999999975999666605988866499975887479998
No 386
>PRK07041 short chain dehydrogenase; Provisional
Probab=34.96 E-value=29 Score=14.31 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=20.2
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 1025684100010596798776544320488741772077445
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~ 300 (445)
++++.+++|+.+|.+..+++...+.+.. ...+.....|..+
T Consensus 26 ~la~~Ga~V~i~~r~~~~l~~~~~~~~~--~~~~~~~~~Dv~~ 66 (240)
T PRK07041 26 AFAARGADVTIASRSRERLAAAARALGG--PRPVRTAALDITD 66 (240)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHCC--CCCEEEEECCCCC
T ss_conf 9998799999995988999999998478--8866999847999
No 387
>PRK08703 short chain dehydrogenase; Provisional
Probab=34.59 E-value=29 Score=14.27 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=62.5
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--------------
Q ss_conf 1331003556447-0000--1025684100010596798776544320488741772077445774--------------
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------- 303 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-------------- 303 (445)
.|++||=--|+.| |+.+ ++++.+.+|+.++.+..+++.+.+.+...+-.....+..|......
T Consensus 5 ~gK~~lITGas~GIG~aiA~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT 84 (239)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 96989994886289999999999879989999798889999999999737995499998505630789999999999983
Q ss_pred CCCCCEEEECCCCCCCCHHHC-CCHHHHCCCHHHHHH----HHHHHHHHHHHHHHHCCC--CCEEEEEEC
Q ss_conf 344766896167421100110-110333288667788----999999999999986089--828999774
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIVK----SACFQRKLLLQGISFVKP--GGIVVFSNC 366 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr-~Pd~~w~~~~~~l~~----l~~~Q~~iL~~a~~~lk~--gG~lvYsTC 366 (445)
.+..|.++- |.| .+.. .|- ...+.++..+ ...--..+...+.+.++. +|.+|+...
T Consensus 85 ~G~lD~lvn---nAG--~~~~~~~~--~~~~~~~~~~~~~vN~~~~~~l~~~~~p~m~~~~~g~Ii~isS 147 (239)
T PRK08703 85 QGKLDGIVH---CAG--YFYALSPL--DFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGE 147 (239)
T ss_pred CCCCCEEEE---CCC--CCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 799768996---665--45788953--3289999999998880899999999999998779908999814
No 388
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=34.50 E-value=29 Score=14.26 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=9.8
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 204887417720774457743447668961
Q gi|254780666|r 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313 (445)
Q Consensus 284 ~R~g~~~~~~~~~D~~~~~~~~~fD~iLlD 313 (445)
.|.|+. |..+-.|+.-+ +.+.|+..++|
T Consensus 222 ~~YG~~-V~pvS~DG~PL-p~G~FPn~~pD 249 (306)
T TIGR02740 222 DRYGIE-VLPVSVDGGPL-PGGKFPNARPD 249 (306)
T ss_pred HHCCCE-EEEEEECCCCC-CCCCCCCCCCC
T ss_conf 731970-89998458887-87888885214
No 389
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=34.49 E-value=18 Score=15.84 Aligned_cols=47 Identities=21% Similarity=0.124 Sum_probs=30.0
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCCCCCCCEEEECCC
Q ss_conf 00105967987765443204887417720774---45774344766896167
Q gi|254780666|r 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAP 315 (445)
Q Consensus 267 ~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~---~~~~~~~~fD~iLlDaP 315 (445)
.-+|-++.=.+.++.-+++.|.. +. ...|+ .+......||.|++|.=
T Consensus 2 LvVDD~~~~~~~l~~~L~~~g~~-v~-~a~~g~~al~~~~~~~~dlvi~Di~ 51 (111)
T pfam00072 2 LIVDDDPLIRELLRQLLEKEGYV-VA-EADDGEEALELLKEKRPDLILLDIR 51 (111)
T ss_pred EEEECCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEEECC
T ss_conf 99989899999999999988999-99-9899999999998479989999536
No 390
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=34.33 E-value=20 Score=15.49 Aligned_cols=73 Identities=26% Similarity=0.305 Sum_probs=39.7
Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHH---------
Q ss_conf 44766896167421100110110333288667788999999999999986089828999774788343999---------
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE--------- 375 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~--------- 375 (445)
.+.+.||||==--.- -|..+..+.-+|+++ ||+ -|+=||+|--+---|+-+
T Consensus 82 R~P~vvLVDELAHtN-----~pgsr~~KR~qDVee-------LL~--------aGIdV~TTlNvQHlESlnd~V~~iTgv 141 (211)
T pfam02702 82 RKPQLVLVDELAHTN-----APGSRHEKRWQDVEE-------LLD--------AGIDVYTTVNVQHLESLNDVVERITGV 141 (211)
T ss_pred CCCCEEEEECCCCCC-----CCCCCCCCCHHHHHH-------HHH--------CCCEEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 399989984455679-----998888754774999-------998--------799088601477665267899972298
Q ss_pred -----HHHHHHHHCCCCEEECCCCCCCC
Q ss_conf -----89999996887417813763233
Q gi|254780666|r 376 -----VVQKVLRSSPIPVELVPLNSAYW 398 (445)
Q Consensus 376 -----vV~~fL~~~~~~~~~~~~~~~~~ 398 (445)
|=++||... +.++++++.+...
T Consensus 142 ~vrEtVPD~vl~~A-dei~lVD~~Pe~L 168 (211)
T pfam02702 142 RVRETVPDSVLDEA-DEVVLVDLTPEEL 168 (211)
T ss_pred CCCCCCCHHHHHHC-CEEEECCCCHHHH
T ss_conf 54771888999535-8279816997999
No 391
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.14 E-value=21 Score=15.29 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 4766896167421100110110333288667788999999999999986089828999774788343999899999968
Q gi|254780666|r 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 306 ~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
+.+.+|+|-|||++--+. -..+++|.. -||..=.+|-.|- |.+|..++-...
T Consensus 167 ~PeVlLmDEPtSALDPIs----------T~kIEeLi~-----------eLk~~yTIviVTH------nmqQAaRvSD~t 218 (253)
T COG1117 167 KPEVLLMDEPTSALDPIS----------TLKIEELIT-----------ELKKKYTIVIVTH------NMQQAARVSDYT 218 (253)
T ss_pred CCCEEEECCCCCCCCCHH----------HHHHHHHHH-----------HHHHCCEEEEEEC------CHHHHHHHHHHH
T ss_conf 986787448642248135----------889999999-----------9874648999937------999987877755
No 392
>PRK06057 short chain dehydrogenase; Provisional
Probab=33.91 E-value=26 Score=14.59 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999960899999999
Q gi|254780666|r 46 QILVRAIVNVTLRFLPRIDAVLD 68 (445)
Q Consensus 46 r~~~~~Lv~gvlR~~~~ld~il~ 68 (445)
..-+.+++-.+..+.+.||-+++
T Consensus 63 ~~~v~~~v~~~~~~~G~iDiLVN 85 (255)
T PRK06057 63 EDAVNALFDTAAETYGSVDIAFN 85 (255)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999998199878998
No 393
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=33.88 E-value=16 Score=16.29 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=8.5
Q ss_pred HHHHHHCCCHHHHHHHHHCC
Q ss_conf 00123129978999988412
Q gi|254780666|r 141 RIAGISIIPEWFKERLENFY 160 (445)
Q Consensus 141 ~l~~~~s~P~Wl~~~~~~~~ 160 (445)
.+...|-+|.-+.-.|+..+
T Consensus 86 SL~~ty~iPl~ml~ShRG~~ 105 (172)
T COG4032 86 SLYVTYKIPLLMLASHRGVL 105 (172)
T ss_pred HHHHHHCCCHHHHHHCCCHH
T ss_conf 99987422355520113413
No 394
>PRK07806 short chain dehydrogenase; Provisional
Probab=33.72 E-value=30 Score=14.17 Aligned_cols=97 Identities=24% Similarity=0.245 Sum_probs=40.7
Q ss_pred ECCCCCCHHHHHCC-HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCCC
Q ss_conf 02568410001059-67987765443204887417720774457743-----------4476689616742110011011
Q gi|254780666|r 259 LIVSGAKVTALDVS-KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHP 326 (445)
Q Consensus 259 l~~~~~~i~A~D~~-~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~P 326 (445)
|++.+.+|+.++.+ ..+.+.+.+.++..|.+ ...+..|..+...- +..|.++--| | |......
T Consensus 26 la~~Ga~Vvi~~~~~~~~a~~~~~~i~~~g~~-a~~~~~Dvtd~~~v~~l~~~~~~~~G~iDiLVnNA---g-~~~~~~~ 100 (248)
T PRK07806 26 LAGAGAHVVVNYRNKAARAEKVVAEIRAAGGR-ASAVGADLTDEASVAALMDAIRAEFGGLDALVLNA---S-GGMESGM 100 (248)
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECC---C-CCCCCCC
T ss_conf 99879989998389568999999999961983-99997899999999999999999849998999899---9-9877899
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 033328866778899999999999998608982899977
Q gi|254780666|r 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 327 d~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
+-.| -+.-....+..++..+.++++.||++|..+
T Consensus 101 ~~~~-----~~~~n~~~~~~~~~~~~p~m~~gg~Ii~is 134 (248)
T PRK07806 101 DPDY-----AMRLNRDAQRRLLTLALPLMPAGSRVVFVT 134 (248)
T ss_pred CHHH-----HHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7226-----899998999999999997750497899985
No 395
>KOG1969 consensus
Probab=33.46 E-value=8.8 Score=18.12 Aligned_cols=18 Identities=44% Similarity=0.750 Sum_probs=15.0
Q ss_pred CCCCCEECCCCCCC-CCEE
Q ss_conf 21331003556447-0000
Q gi|254780666|r 240 LNNLSVLDLCAAPG-GKTA 257 (445)
Q Consensus 240 ~~g~~VLD~CAAPG-GKT~ 257 (445)
.|.++||=+|-.|| |||+
T Consensus 323 RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969 323 RPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred CCCCCEEEEECCCCCCHHH
T ss_conf 9840068753688787247
No 396
>KOG3347 consensus
Probab=33.41 E-value=30 Score=14.14 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=65.0
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEE-ECCCCCCCCHHHCCCHHHHCCCHHHHHHH--H
Q ss_conf 10001059679877654432048874177207744577434476689-61674211001101103332886677889--9
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL-VDAPCSSTGTIRRHPDVLWTRDTDDIVKS--A 341 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iL-lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l--~ 341 (445)
.--+..+++.++-..-+.+-+-|- .|+-.-+.++.+...||+|. |-.|-|-+ +-| -..| -.++..+.+. +
T Consensus 54 ~y~c~i~DEdkv~D~Le~~m~~Gg---~IVDyHgCd~FperwfdlVvVLr~~~s~L--Y~R-L~sR-gY~e~Ki~eNiec 126 (176)
T KOG3347 54 EYKCHILDEDKVLDELEPLMIEGG---NIVDYHGCDFFPERWFDLVVVLRTPNSVL--YDR-LKSR-GYSEKKIKENIEC 126 (176)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCC---CEEEECCCCCCCHHHEEEEEEEECCCHHH--HHH-HHHC-CCCHHHHHHHCCH
T ss_conf 236754567899988889875688---48860056765011355799994684599--999-9975-8888887651015
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 999999999998608982899977478834399989999996
Q gi|254780666|r 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 342 ~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
++=--+++.|...-+++ +|---=|=.+||-+.+|.+.+.-
T Consensus 127 EIfgv~~eea~eSy~~~--iV~eL~s~~~Eem~~ni~ri~~w 166 (176)
T KOG3347 127 EIFGVVLEEARESYSPK--IVVELQSETKEEMESNISRILNW 166 (176)
T ss_pred HHHHHHHHHHHHHCCCC--CEEECCCCCHHHHHHHHHHHHHH
T ss_conf 89999999999871874--21334767789999989999999
No 397
>pfam00799 Gemini_AL1 Geminivirus Rep catalytic domain. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.
Probab=33.14 E-value=31 Score=14.11 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=20.6
Q ss_pred CCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 898289997747883439998999999
Q gi|254780666|r 356 KPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 356 k~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445)
.++=.|.|+-||+.+||--+++...+.
T Consensus 5 aKn~FLTYPqC~l~kE~al~~l~~l~~ 31 (114)
T pfam00799 5 AKNVFLTYPRCSLSPEEALEQLQDLLT 31 (114)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 402887679999999999999997578
No 398
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=33.00 E-value=22 Score=15.23 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=6.7
Q ss_pred CCEEEEECCCHHHHHHHH
Q ss_conf 836676159989999864
Q gi|254780666|r 176 LYIDLTVKFDIETWAHKL 193 (445)
Q Consensus 176 ~~l~i~~k~~~~~~~~~L 193 (445)
|-+-++.+.+.+.....+
T Consensus 73 pII~lta~~~~~d~i~~l 90 (223)
T PRK11517 73 PVICLTARDSVDDRVRGL 90 (223)
T ss_pred CEEEEECCCCHHHHHHHH
T ss_conf 489995655657899999
No 399
>PRK07985 oxidoreductase; Provisional
Probab=32.94 E-value=31 Score=14.08 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=67.3
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHH--HCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCC
Q ss_conf 1331003556447-0000--102568410001--05967987765443204887417720774457743--------447
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTAL--DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLF 307 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~--D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~f 307 (445)
.|+++|=--|+.| |+.. .|++.+++|+-+ +.+....+.+.+.++..|.. +.++..|..+...- +.|
T Consensus 48 ~gKvalVTGas~GIG~aiA~~lA~~GA~Vvi~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~Dvs~~~~v~~lv~~~~~~f 126 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRK-AVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 999799917266999999999998799999942996667899999999972995-8999767899999999999999985
Q ss_pred CE--EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH----HHHHHHHHHHHCCCCCEEEEEE--CCCCHHHC
Q ss_conf 66--8961674211001101103332886677889999----9999999998608982899977--47883439
Q gi|254780666|r 308 DA--VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF----QRKLLLQGISFVKPGGIVVFSN--CSLDKQDS 373 (445)
Q Consensus 308 D~--iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~----Q~~iL~~a~~~lk~gG~lvYsT--CSi~~eEn 373 (445)
.+ ||+ -+.| ...+.|++ -..++++..+...+ ..-+...+.+++++||.+|..+ ....+..+
T Consensus 127 G~iDiLV--nnAG--~~~~~~~~-~~~s~e~~~~~~~vNl~g~~~~~qaa~p~m~~gGsIInisS~~~~~~~p~ 195 (294)
T PRK07985 127 GGLDIMA--LVAG--KQVAIPDI-ADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPH 195 (294)
T ss_pred CCCCEEE--EECC--CCCCCCCH-HHCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC
T ss_conf 9988899--8066--66688883-65899999999998653478888876776424877999666465278887
No 400
>PRK06914 short chain dehydrogenase; Provisional
Probab=32.78 E-value=31 Score=14.07 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=8.9
Q ss_pred CCCHHHCHHHHHHHHHH
Q ss_conf 78834399989999996
Q gi|254780666|r 367 SLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 367 Si~~eEne~vV~~fL~~ 383 (445)
...|++--+.|.+.+.+
T Consensus 226 ~~~pe~vA~~i~~a~~~ 242 (280)
T PRK06914 226 FGNPIDVAELIVRIAES 242 (280)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 89999999999999828
No 401
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.69 E-value=31 Score=14.06 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999608999999999
Q gi|254780666|r 44 RDQILVRAIVNVTLRFLPRIDAVLDF 69 (445)
Q Consensus 44 ~Dr~~~~~Lv~gvlR~~~~ld~il~~ 69 (445)
.|..-+..++-.+..+.+.+|-+++.
T Consensus 65 ~~~~~~~~~~~~~~~~fg~iDiLVNN 90 (259)
T PRK12745 65 ADLSAHEATLDAAQDAWGRIDCLVNN 90 (259)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999999982998899984
No 402
>PRK09072 short chain dehydrogenase; Provisional
Probab=32.34 E-value=31 Score=14.02 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=7.3
Q ss_pred CCCCCHHHHHCCHHHHHHHH
Q ss_conf 56841000105967987765
Q gi|254780666|r 261 VSGAKVTALDVSKRRLEKLR 280 (445)
Q Consensus 261 ~~~~~i~A~D~~~~Rl~~l~ 280 (445)
+.+.+|+.++.++.+++.+.
T Consensus 27 ~~G~~vil~~R~~~~L~~~~ 46 (262)
T PRK09072 27 AAGARLLLVGRNAEKLEALA 46 (262)
T ss_pred HCCCEEEEEECCHHHHHHHH
T ss_conf 87998999989899999999
No 403
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=31.73 E-value=30 Score=14.21 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHCCCHHH
Q ss_conf 299789999884126799
Q gi|254780666|r 147 IIPEWFKERLENFYGKER 164 (445)
Q Consensus 147 s~P~Wl~~~~~~~~G~~~ 164 (445)
.+-.-||+.+++.||..-
T Consensus 122 ~YA~DLV~yIr~~YGD~F 139 (312)
T TIGR00677 122 KYAVDLVKYIRSKYGDYF 139 (312)
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 766788998775238802
No 404
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase; InterPro: IPR012788 Members of this entry are 4-carboxymuconolactone decarboxylases, which catalyses the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this domain are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus..
Probab=31.72 E-value=32 Score=13.95 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=61.8
Q ss_pred CCCHHHHHHH--HHHHHHHH-----CCCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7846999999--99999995-----5998899999985112--3216898899999999999996089999999998428
Q gi|254780666|r 3 SGMNARLVSS--HLLSCVMR-----KRISLTCLLDLEYGDS--AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 (445)
Q Consensus 3 ~~~~aR~~A~--~iL~~v~~-----~~~~~~~~l~~~~~~~--~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~ 73 (445)
.||..|+.++ .=.+.-+. =++++...+.+..--. .-.+|+.+.|++++==+.-.+-+-.-|+--|.--...
T Consensus 7 ~Gm~~RRaVLGDaHVDRA~a~~~ddF~~pFQ~lITe~AWG~vW~r~gL~~r~Rsl~TiA~LaAlG~~~El~~H~RAt~nt 86 (124)
T TIGR02425 7 QGMQVRRAVLGDAHVDRALAATTDDFDQPFQELITEAAWGTVWSRPGLTKRERSLVTIALLAALGRDEELALHVRATANT 86 (124)
T ss_pred HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 65888878735676538876033457842789999872686036757876678699999998428700135789998766
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC
Q ss_conf 81004889999999999999986899733256225877522
Q gi|254780666|r 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 (445)
Q Consensus 74 ~~~~~~~~~~~iLr~a~~ell~~~~p~~a~vneaVelak~~ 114 (445)
+....+ .-..+|.+|+| -.+|.. |.++.++|..
T Consensus 87 Gvt~~d-i~EvLlhvAiY----AGVPaA---N~Af~~ak~~ 119 (124)
T TIGR02425 87 GVTEDD-IKEVLLHVAIY----AGVPAA---NHAFKLAKEV 119 (124)
T ss_pred CCCHHH-HHHHHHHHHHH----HCCHHH---HHHHHHHHHH
T ss_conf 998999-99999987797----142478---9899999999
No 405
>KOG3421 consensus
Probab=31.64 E-value=12 Score=17.01 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=6.8
Q ss_pred CEEEECCCCCCC
Q ss_conf 668961674211
Q gi|254780666|r 308 DAVLVDAPCSST 319 (445)
Q Consensus 308 D~iLlDaPCSg~ 319 (445)
.+||+|.|||+.
T Consensus 34 nr~lvDGp~t~v 45 (136)
T KOG3421 34 NRALVDGPCTGV 45 (136)
T ss_pred HHHHCCCCCCCC
T ss_conf 235304864456
No 406
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=31.45 E-value=27 Score=14.49 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=11.7
Q ss_pred CCCCEEEECCCCCCCCH
Q ss_conf 44766896167421100
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGT 321 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt 321 (445)
..||.||+|.|+|=...
T Consensus 116 ~~yD~iliD~Pp~l~~l 132 (244)
T pfam06564 116 GQYRWILLDLPQGFSPL 132 (244)
T ss_pred CCCCEEEEECCCCCHHH
T ss_conf 78999999799996899
No 407
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=31.24 E-value=33 Score=13.89 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=57.5
Q ss_pred CCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--------CCCCEE
Q ss_conf 331003556447-0000--10256841000105967987765443204887417720774457743--------447668
Q gi|254780666|r 242 NLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------KLFDAV 310 (445)
Q Consensus 242 g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--------~~fD~i 310 (445)
|+.+|=--++.| |+.+ .+++.+++|+.+|+++.+++...+.++..|.. ...+..|.++...- +.|.+|
T Consensus 9 gK~alVTG~~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~-~~~~~~Dvtd~~~v~~~v~~~~~~~G~i 87 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEKAVAKLRQEGIK-AHAAAFNVTHKQEIEAAIEHIEKDIGPI 87 (254)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 998999685678999999999986999999969889999999999844981-8999826899999999999999983998
Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHH----HHHHHHHHHC--CCCCEEEEEECCCCH
Q ss_conf 96167421100110110333288667788999999----9999999860--898289997747883
Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR----KLLLQGISFV--KPGGIVVFSNCSLDK 370 (445)
Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~----~iL~~a~~~l--k~gG~lvYsTCSi~~ 370 (445)
|.=...-|+-.+.| .+..++++.++.-.+-. -+...+.+.+ ..+|.+|.. +|+..
T Consensus 88 --DilVnNAG~~~~~~--~~~~~~e~w~~~~~vNl~g~f~~~q~~~~~m~~~~~G~IIni-sS~~~ 148 (254)
T PRK08085 88 --DVLINNAGIQRRHP--FTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINI-CSMQS 148 (254)
T ss_pred --CEEEECCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-EEHHH
T ss_conf --69998986788877--010989999999999849999999998599887399729999-77301
No 408
>TIGR01974 NDH_I_L proton-translocating NADH-quinone oxidoreductase, chain L; InterPro: IPR003945 NADH-plastoquinone oxidoreductase chain 5 is part of the NADH-ubiquinone oxidoreductase (complex I), which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane : NADH + ubiquinone = NAD(+) + ubiquinol ; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=31.17 E-value=8 Score=18.43 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999960899999999984288
Q gi|254780666|r 48 LVRAIVNVTLRFLPRIDAVLDFVLISS 74 (445)
Q Consensus 48 ~~~~Lv~gvlR~~~~ld~il~~~~~~~ 74 (445)
.+..+....+++.-..|+..+...=+|
T Consensus 602 ~~~~~l~~~~~n~wyfD~lY~~~fv~~ 628 (691)
T TIGR01974 602 GLYRLLLKFLLNKWYFDELYDKLFVKP 628 (691)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 779999999998527605657999899
No 409
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=31.11 E-value=33 Score=13.88 Aligned_cols=156 Identities=20% Similarity=0.141 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCC--HHHHHHHHHHHHCCCCCCEECCCCCCHHHCHHHHHCCCE
Q ss_conf 299789999884126799999999614698366761599--899998643210235661110456785558501100101
Q gi|254780666|r 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD--IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 (445)
Q Consensus 147 s~P~Wl~~~~~~~~G~~~~~~l~~~~~~p~~l~i~~k~~--~~~~~~~L~~~~~~~~~~~~~~~~~~i~~~~~f~eG~~~ 224 (445)
..|.|+..-....|- +..+.+.+.+.-| -+.=|+=+. .-+-.=.+. ...+.+.+......+.+ .+|.+|+.
T Consensus 228 ~IP~~i~~i~~g~~~-eA~~~i~~tN~lP-~icGRVCP~~~~CE~aC~~~---~~~~pVaIg~LERfi~D-~a~~~g~~- 300 (639)
T PRK12809 228 AIPDYIRLVQEGKII-EAAELCHQTSSLP-EICGRVCPQDRLCEGACTLK---DHSGAVSIGNLERYITD-TALAMGWR- 300 (639)
T ss_pred CHHHHHHHHHCCCHH-HHHHHHHHHCCCH-HHHCCCCCCCCCHHHHCCCC---CCCCCEEECHHHHHHHH-HHHHHCCC-
T ss_conf 778999999869999-9999998648802-43236689986669865289---99998578889999999-99983998-
Q ss_pred ECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEE--ECCC-------------CCC----HHHHHCCHHHHHHHHHHHHC
Q ss_conf 3463212322235632133100355644700001--0256-------------841----00010596798776544320
Q gi|254780666|r 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVS-------------GAK----VTALDVSKRRLEKLRCNLDR 285 (445)
Q Consensus 225 VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~--l~~~-------------~~~----i~A~D~~~~Rl~~l~~~~~R 285 (445)
.+.. -....|++|-=.-|||-|=|+. |+.. +|- |-..=+...-+++-.+.++.
T Consensus 301 -p~~~-------~~~~~gkKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~ 372 (639)
T PRK12809 301 -PDVS-------KVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTA 372 (639)
T ss_pred -CCCC-------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf -8877-------76888998999897589999999999759906999368888986853587452777899999999986
Q ss_pred CCCCC-EEEEEC-CCCCCCCCCCCCEEEECCCCCCCCHH
Q ss_conf 48874-177207-74457743447668961674211001
Q gi|254780666|r 286 LHLYA-EDIIEM-DAFDYCPKKLFDAVLVDAPCSSTGTI 322 (445)
Q Consensus 286 ~g~~~-~~~~~~-D~~~~~~~~~fD~iLlDaPCSg~Gt~ 322 (445)
+|+.- ..+..+ |..--...+.||.|+| |+|++
T Consensus 373 lGV~f~~n~~VGkDit~~eL~~~yDAVfl-----g~Ga~ 406 (639)
T PRK12809 373 MGIDFHLNCEIGRDITFSDLTSEYDAVFI-----GVGTY 406 (639)
T ss_pred CCCEEEECCEECCCCCHHHHHHHCCEEEE-----EECCC
T ss_conf 49889919677986889999731798999-----73678
No 410
>KOG0781 consensus
Probab=30.90 E-value=7.9 Score=18.45 Aligned_cols=118 Identities=28% Similarity=0.419 Sum_probs=64.3
Q ss_pred CEECCCCCCC-CCEEEE-------CCCCCC--HHHHHC-CHHHHHHHHHHHHCCC-CC--CEEEEE----CCCC------
Q ss_conf 1003556447-000010-------256841--000105-9679877654432048-87--417720----7744------
Q gi|254780666|r 244 SVLDLCAAPG-GKTAQL-------IVSGAK--VTALDV-SKRRLEKLRCNLDRLH-LY--AEDIIE----MDAF------ 299 (445)
Q Consensus 244 ~VLD~CAAPG-GKT~~l-------~~~~~~--i~A~D~-~~~Rl~~l~~~~~R~g-~~--~~~~~~----~D~~------ 299 (445)
-|+=+|---| |||+-| ++|+-+ |.|||. ....++.|+...+|+. ++ -|++.. .|+.
T Consensus 379 Yvi~fvGVNGVGKSTNLAKIayWLlqNkfrVlIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~A 458 (587)
T KOG0781 379 YVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEA 458 (587)
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 59999821476651329999999985783699986243124478999999999987455204888610477828999999
Q ss_pred -CCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHH
Q ss_conf -5774344766896167421100110110333288667788999999999999986089828999774788343999899
Q gi|254780666|r 300 -DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 (445)
Q Consensus 300 -~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~ 378 (445)
.+.-...||.||+|-- =|+|-+... +. -|.+-++.-+|. .++|.-=-+---+.-+|+.
T Consensus 459 I~~a~~~gfDvvLiDTA------GRmhn~~~L------M~--------~L~kl~~~n~pD-~i~~VgEALVG~dsvdq~~ 517 (587)
T KOG0781 459 IQEARNQGFDVVLIDTA------GRMHNNAPL------MT--------SLAKLIKVNKPD-LILFVGEALVGNDSVDQLK 517 (587)
T ss_pred HHHHHHCCCCEEEEECC------CCCCCCHHH------HH--------HHHHHHHCCCCC-EEEEEHHHHHCCHHHHHHH
T ss_conf 99998669878998354------433478067------89--------999997447986-5998505552755899999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780666|r 379 KVLR 382 (445)
Q Consensus 379 ~fL~ 382 (445)
+|=+
T Consensus 518 ~Fn~ 521 (587)
T KOG0781 518 KFNR 521 (587)
T ss_pred HHHH
T ss_conf 9999
No 411
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.79 E-value=25 Score=14.75 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=22.1
Q ss_pred CEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCCCCCCCCEEEEC
Q ss_conf 100355644700001025684100010596798776544320488741772-0774457743447668961
Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVD 313 (445)
Q Consensus 244 ~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~-~~D~~~~~~~~~fD~iLlD 313 (445)
+||=+|| .|+-|..|+ +.+++-++..|+. +++. .+.......-+.||.|||-
T Consensus 2 kVLl~Ca-~GmSSs~la----------------~~m~k~A~~~gi~-~~i~A~~~~~~~d~~~~yDvilLa 54 (99)
T cd05565 2 NVLVLCA-GGGTSGLLA----------------NALNKGAKERGVP-LEAAAGAYGSHYDMIPDYDLVILA 54 (99)
T ss_pred EEEEEEC-CCCCHHHHH----------------HHHHHHHHHCCCC-EEEEEEECHHHHHHHHCCCEEEEC
T ss_conf 0999907-988589999----------------9999999981997-699951034489887079999998
No 412
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=30.13 E-value=34 Score=13.76 Aligned_cols=19 Identities=21% Similarity=0.728 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999986089828999
Q gi|254780666|r 345 RKLLLQGISFVKPGGIVVF 363 (445)
Q Consensus 345 ~~iL~~a~~~lk~gG~lvY 363 (445)
+..+.+....++|||.+|-
T Consensus 24 ~~~f~~~~~~l~pgg~lil 42 (110)
T pfam06859 24 KRFFRRIYRLLRPGGILIL 42 (110)
T ss_pred HHHHHHHHHHHCCCCEEEE
T ss_conf 9999999996188988999
No 413
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=29.96 E-value=34 Score=13.74 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.0
Q ss_pred CCCCEEEECCCCCCCCH
Q ss_conf 44766896167421100
Q gi|254780666|r 305 KLFDAVLVDAPCSSTGT 321 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~Gt 321 (445)
+..+.|++|-|-||+--
T Consensus 147 HePeLlILDEPFSGLDP 163 (300)
T COG4152 147 HEPELLILDEPFSGLDP 163 (300)
T ss_pred CCCCEEEECCCCCCCCH
T ss_conf 28877996688668872
No 414
>PRK12743 acetoin dehydrogenase; Provisional
Probab=29.85 E-value=34 Score=13.73 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999960899999999
Q gi|254780666|r 45 DQILVRAIVNVTLRFLPRIDAVLD 68 (445)
Q Consensus 45 Dr~~~~~Lv~gvlR~~~~ld~il~ 68 (445)
|...+..++-.+....+.||.+++
T Consensus 63 ~~~~~~~~~~~~~~~~G~iDilVN 86 (253)
T PRK12743 63 NLPEGAQAIEKLIQRLGRLDVLVN 86 (253)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999999999998199989998
No 415
>KOG3350 consensus
Probab=29.71 E-value=13 Score=16.92 Aligned_cols=91 Identities=13% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCEECCCCCCCCCCCCCC-CCCCCEECCCCCCCC----CEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 101346321232223563-213310035564470----000102568410001059679877654432048874177207
Q gi|254780666|r 222 VWWVQDASASIPVQLFGT-LNNLSVLDLCAAPGG----KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 (445)
Q Consensus 222 ~~~VQD~aSql~~~~l~~-~~g~~VLD~CAAPGG----KT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~ 296 (445)
.|+-+|-|.++++..+.. ..| .++-.-++|-- |.-.+--..-.|+-.+-+ ++.++.| .+.+..
T Consensus 53 fwy~~eta~~La~e~v~~s~e~-~rIacvS~Psly~y~k~re~~~~~~~v~lfEfD--------kRFe~yg---~eFvfY 120 (217)
T KOG3350 53 FWYSDETARKLAAERVEASGEG-SRIACVSCPSLYVYQKKREIEIPHDQVYLFEFD--------KRFELYG---TEFVFY 120 (217)
T ss_pred HHCCHHHHHHHHHHHHHHCCCC-CEEEEEECCHHHHHHHHHHCCCCCEEEEEEEEH--------HHHHHCC---CEEEEE
T ss_conf 5137779999999998523568-569997176077655213116775069998722--------4677504---525785
Q ss_pred CCCCC---CC--CCCCCEEEECCCCCCCCHHHC
Q ss_conf 74457---74--344766896167421100110
Q gi|254780666|r 297 DAFDY---CP--KKLFDAVLVDAPCSSTGTIRR 324 (445)
Q Consensus 297 D~~~~---~~--~~~fD~iLlDaPCSg~Gt~rr 324 (445)
|--.+ .. +.+||.|+.|+|-=+.--+++
T Consensus 121 DyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~K 153 (217)
T KOG3350 121 DYNCPLDLPDELKAHFDIIVADPPFLSEECLAK 153 (217)
T ss_pred CCCCCCCCHHHHHHCCCEEEECCCCCCCHHHHH
T ss_conf 068977777999740168971786546166666
No 416
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=29.57 E-value=26 Score=14.68 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=30.0
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC---CCCCCCCCCEEEECCCC
Q ss_conf 10001059679877654432048874177207744---57743447668961674
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---DYCPKKLFDAVLVDAPC 316 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~---~~~~~~~fD~iLlDaPC 316 (445)
+|.-+|-+..-.+.++..+++.|.. +. ...|+. .......||.|++|...
T Consensus 2 kVLivdD~~~~~~~l~~~l~~~g~~-v~-~~~~g~~~~~~~~~~~~dlil~D~~m 54 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYE-VD-EATDGEEALELLKEEKPDLILLDIMM 54 (55)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 8999937999999999999978999-99-98899999999974999999996768
No 417
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=29.54 E-value=35 Score=13.69 Aligned_cols=12 Identities=0% Similarity=-0.186 Sum_probs=4.4
Q ss_pred CHHHHHHHHHHC
Q ss_conf 999899999968
Q gi|254780666|r 373 SEEVVQKVLRSS 384 (445)
Q Consensus 373 ne~vV~~fL~~~ 384 (445)
|..-+++++++.
T Consensus 360 d~~el~~~i~~~ 371 (429)
T cd03466 360 DFFDIESYAKEL 371 (429)
T ss_pred CHHHHHHHHHHC
T ss_conf 999999999765
No 418
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=29.54 E-value=25 Score=14.79 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=9.2
Q ss_pred HCCHHHHHHHHHHHHC-CCCCCEEEE
Q ss_conf 0596798776544320-488741772
Q gi|254780666|r 270 DVSKRRLEKLRCNLDR-LHLYAEDII 294 (445)
Q Consensus 270 D~~~~Rl~~l~~~~~R-~g~~~~~~~ 294 (445)
+.+.+.++..-.|+.| ++-..+..+
T Consensus 184 ~~~~~~ld~~I~rLRkKl~~~~I~tv 209 (222)
T PRK10643 184 EPSTNTLEVHIHNLRDKVGKDRIRTV 209 (222)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 88867699999999976699857976
No 419
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=29.28 E-value=27 Score=14.46 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=5.5
Q ss_pred EEEEECCCHHHHHHH
Q ss_conf 667615998999986
Q gi|254780666|r 178 IDLTVKFDIETWAHK 192 (445)
Q Consensus 178 l~i~~k~~~~~~~~~ 192 (445)
+-++.+.+.+.....
T Consensus 76 I~Lta~~~~~d~i~~ 90 (226)
T PRK09836 76 LLLTALGTIEHRVKG 90 (226)
T ss_pred EEEECCCCHHHHHHH
T ss_conf 999445898899999
No 420
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.21 E-value=35 Score=13.65 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=15.6
Q ss_pred ECCCCCCHHHHHCC-HHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 02568410001059-679877654432048874177207744
Q gi|254780666|r 259 LIVSGAKVTALDVS-KRRLEKLRCNLDRLHLYAEDIIEMDAF 299 (445)
Q Consensus 259 l~~~~~~i~A~D~~-~~Rl~~l~~~~~R~g~~~~~~~~~D~~ 299 (445)
+++.+..|+.++.+ ...++.+.+.++..|. ++..+..|..
T Consensus 27 la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~ 67 (250)
T PRK12825 27 LAAAGADVIVHPPSDEAAAEETVAAVEALGR-RAQAVQADVT 67 (250)
T ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHHHCCC-CEEEEEEECC
T ss_conf 9987998999979887899999999985399-4899994189
No 421
>pfam02977 CarbpepA_inh Carboxypeptidase A inhibitor.
Probab=29.12 E-value=19 Score=15.56 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=16.2
Q ss_pred HHHHCCCCCEEEEEECCCCH
Q ss_conf 99860898289997747883
Q gi|254780666|r 351 GISFVKPGGIVVFSNCSLDK 370 (445)
Q Consensus 351 a~~~lk~gG~lvYsTCSi~~ 370 (445)
.+++-+++|-.+|++||+.|
T Consensus 21 C~k~~~t~~g~~~~~cs~~p 40 (40)
T pfam02977 21 CWKLKKTCGGYTGRACSILP 40 (40)
T ss_pred HHHHCCCCCCCCCCEEECCC
T ss_conf 98655788886562134178
No 422
>PRK07478 short chain dehydrogenase; Provisional
Probab=29.11 E-value=35 Score=13.64 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=21.4
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 025684100010596798776544320488741772077445
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~ 300 (445)
+++.+++|+.+|.+..+++.+.+.++..|.. +..+..|..+
T Consensus 26 la~~Ga~Vvi~~r~~~~l~~~~~ei~~~g~~-~~~~~~Dvt~ 66 (254)
T PRK07478 26 FAREGAKVVVGARRQAELDQLVAEIRAEGGE-AVALAGDVRD 66 (254)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCC
T ss_conf 9987999999979889999999999964990-8999768999
No 423
>PRK07063 short chain dehydrogenase; Provisional
Probab=28.85 E-value=36 Score=13.61 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999608999999999
Q gi|254780666|r 43 QRDQILVRAIVNVTLRFLPRIDAVLDF 69 (445)
Q Consensus 43 ~~Dr~~~~~Lv~gvlR~~~~ld~il~~ 69 (445)
-.|..-+..++-.+....+.||-+++.
T Consensus 66 vt~~~~v~~~v~~~~~~~G~iDiLVNN 92 (259)
T PRK07063 66 VTRAASVRAAVARAEAAFGPLDVLVNN 92 (259)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 899999999999999981998899989
No 424
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG; InterPro: IPR014135 This entry contains the Agrobacterium tumefaciens Ti-plasmid TraG, it is responsible for conjugative transfer of the entire plasmid among Agrobacterium strains . The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems..
Probab=28.44 E-value=36 Score=13.56 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=44.5
Q ss_pred CCCCCC-CEEEE-----CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CCCCEEEEC-CC
Q ss_conf 564470-00010-----256841000105967987765443204887417720774457743--447668961-67
Q gi|254780666|r 249 CAAPGG-KTAQL-----IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD-AP 315 (445)
Q Consensus 249 CAAPGG-KT~~l-----~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--~~fD~iLlD-aP 315 (445)
-||-|| ||+-- +..+|-|++.|.|..=.=...+.-+..|= -++++-|+....-+ +.-|.|.=| +|
T Consensus 226 FAGSGGfKTTS~vvPTaL~y~Gplv~LDPStEvAPMV~~hRr~~g~--R~ViVLDP~~~~~kgFNvLDwi~~~~vP 299 (641)
T TIGR02767 226 FAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVVEHRRKAGD--RKVIVLDPAAGVVKGFNVLDWIERDGVP 299 (641)
T ss_pred EECCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCC--CEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7078781104642365402787879868876644006899874149--6489976888874664000141237886
No 425
>pfam09033 DFF-C DNA Fragmentation factor 45kDa, C terminal domain. The C terminal domain of DNA Fragmentation factor 45kDa (DFF-C) consists of four alpha-helices, which are folded in a helix-packing arrangement, with alpha-2 and alpha-3 packing against a long C-terminal helix (alpha-4). The main function of this domain is the inhibition of DFF40 by binding to its C-terminal catalytic domain through ionic interactions, thereby inhibiting the fragmentation of DNA in the apoptotic process. In addition to blocking the DNase activity of DFF40, the C-terminal region of DFF45 is also important for the DFF40-specific folding chaperone activity, as demonstrated by the ability of DFF45 to refold DFF40.
Probab=28.41 E-value=9.3 Score=17.94 Aligned_cols=10 Identities=50% Similarity=1.122 Sum_probs=4.6
Q ss_pred EEECCCCCCC
Q ss_conf 8961674211
Q gi|254780666|r 310 VLVDAPCSST 319 (445)
Q Consensus 310 iLlDaPCSg~ 319 (445)
||+|+|||-+
T Consensus 50 ~LiDvPcsdL 59 (164)
T pfam09033 50 MLIDVPCSEL 59 (164)
T ss_pred HHHCCCHHHH
T ss_conf 9972882789
No 426
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=28.13 E-value=37 Score=13.52 Aligned_cols=74 Identities=9% Similarity=0.099 Sum_probs=45.1
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 766896167421100110110333-----288667788999999999999986089828999774788343999899999
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLW-----TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w-----~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445)
+..|++-+| -|.-.--|.|.+.- -++.-||..+..+-.+.....++.++|+-.++- .|-..-|+-+.--.+|
T Consensus 208 ~kVvvlSVt-EGeDKPlKYP~mF~~ad~vlinKiDLlp~~dFD~~~~~~~~~~vNp~~~v~~--vSa~tGeGld~W~~WL 284 (290)
T PRK10463 208 HKVAVLSVT-EGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIIL--ISATSGEGMDQWLNWL 284 (290)
T ss_pred EEEEEEEEC-CCCCCCCCCHHHHHHCCEEEEEHHHHHHHCCCCHHHHHHHHHHHCCCCCEEE--EECCCCCCHHHHHHHH
T ss_conf 179999706-8888644476676425789986565122028899999999998698985899--7568887899999999
Q ss_pred HH
Q ss_conf 96
Q gi|254780666|r 382 RS 383 (445)
Q Consensus 382 ~~ 383 (445)
+.
T Consensus 285 ~~ 286 (290)
T PRK10463 285 ET 286 (290)
T ss_pred HH
T ss_conf 99
No 427
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.92 E-value=37 Score=13.50 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=10.2
Q ss_pred EEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 899977478834399989999996
Q gi|254780666|r 360 IVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 360 ~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
..++..|+--..+-++.+++.+..
T Consensus 328 ~~~~vv~~~~~~~~~~~i~~~~~~ 351 (435)
T cd01974 328 EPVHVLTGNGGKRFEKEMQALLDA 351 (435)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 789999799977899999999862
No 428
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.88 E-value=37 Score=13.49 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=8.4
Q ss_pred HHHHHHHHHCCCCEEE
Q ss_conf 9899999968874178
Q gi|254780666|r 375 EVVQKVLRSSPIPVEL 390 (445)
Q Consensus 375 ~vV~~fL~~~~~~~~~ 390 (445)
.-+++++++.+-++.+
T Consensus 360 ~el~~~i~~~~pDlli 375 (430)
T cd01981 360 TEVGDMIARTEPELIF 375 (430)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 9999998624999999
No 429
>PRK05717 oxidoreductase; Validated
Probab=27.43 E-value=38 Score=13.43 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999960899999999
Q gi|254780666|r 44 RDQILVRAIVNVTLRFLPRIDAVLD 68 (445)
Q Consensus 44 ~Dr~~~~~Lv~gvlR~~~~ld~il~ 68 (445)
.|..-+.+++..+..+.+.||.+++
T Consensus 66 t~~~~v~~~i~~~~~~~G~id~lvn 90 (255)
T PRK05717 66 ADEAQVAAGVAEVLGQFGRLDALVC 90 (255)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999999998299989998
No 430
>PRK11749 putative oxidoreductase; Provisional
Probab=27.42 E-value=34 Score=13.75 Aligned_cols=81 Identities=23% Similarity=0.202 Sum_probs=40.5
Q ss_pred CCCCCCCEECCCCCCCCCEEE--ECCCCCCHHHHH-----------------CCHHHHHHHHHHHHCCCCCCE-EEEE-C
Q ss_conf 632133100355644700001--025684100010-----------------596798776544320488741-7720-7
Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALD-----------------VSKRRLEKLRCNLDRLHLYAE-DIIE-M 296 (445)
Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~--l~~~~~~i~A~D-----------------~~~~Rl~~l~~~~~R~g~~~~-~~~~-~ 296 (445)
.+..|++|.=.-|||.|=|+. |+..+-.|+-+| +...-++...+.+..+|+... .+.. .
T Consensus 136 ~~~~gkkVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGll~~GIP~~rlpk~v~~~ei~~i~~~GV~~~~n~~vG~ 215 (460)
T PRK11749 136 APKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTAVGR 215 (460)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEECC
T ss_conf 66789989998967899999999997698479970478787557545899755447999999999853978985558566
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHH
Q ss_conf 744577434476689616742110011
Q gi|254780666|r 297 DAFDYCPKKLFDAVLVDAPCSSTGTIR 323 (445)
Q Consensus 297 D~~~~~~~~~fD~iLlDaPCSg~Gt~r 323 (445)
|..--.....||.|++ ++|+++
T Consensus 216 ditl~~L~~~ydAV~l-----AtGa~~ 237 (460)
T PRK11749 216 DITLDELRAEYDAVFI-----GTGLGL 237 (460)
T ss_pred CCCHHHHHHCCCEEEE-----ECCCCC
T ss_conf 4328877411488999-----447898
No 431
>PRK06227 consensus
Probab=27.20 E-value=38 Score=13.41 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=9.9
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 568410001059679877654432048
Q gi|254780666|r 261 VSGAKVTALDVSKRRLEKLRCNLDRLH 287 (445)
Q Consensus 261 ~~~~~i~A~D~~~~Rl~~l~~~~~R~g 287 (445)
+.+++|+.+|+++.......+.++..|
T Consensus 27 ~~Ga~V~i~~~~~~~~~~~~~~~~~~g 53 (256)
T PRK06227 27 ENGAKVVIADIDEEAGLEREEMLRSNG 53 (256)
T ss_pred HCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 879999999698889999999999559
No 432
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=27.18 E-value=27 Score=14.48 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=15.0
Q ss_pred HHCCHHHHHHHHHHHHCCCCCC-EEEEECC
Q ss_conf 1059679877654432048874-1772077
Q gi|254780666|r 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMD 297 (445)
Q Consensus 269 ~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D 297 (445)
+|+|-.||++ +|+.-|..+ |+++-+-
T Consensus 195 VDVHIRRLRK---aL~~~g~~~~vqTVRGa 221 (226)
T TIGR02154 195 VDVHIRRLRK---ALEPGGLEDLVQTVRGA 221 (226)
T ss_pred EEEEECCHHH---HCCCCCCCCCEEEECCC
T ss_conf 0032200054---23878888715651046
No 433
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=26.98 E-value=37 Score=13.48 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=35.6
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-----CCCCCEEEE
Q ss_conf 025684100010596798776544320488741772077445774-----344766896
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLV 312 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-----~~~fD~iLl 312 (445)
+++.+..|.-+|.++.|.+.+.+.+. ++.++++|+++... -..+|.++.
T Consensus 250 ~L~~~~~v~iIe~d~~~~~~la~~l~-----~~~Vi~GD~td~~~L~e~gi~~aD~~ia 303 (455)
T PRK09496 250 LLEKGYSVKLIERDPERAEELAEELP-----NTLVLHGDGTDQELLEEEGIDEADAFIA 303 (455)
T ss_pred HHHCCCEEEEECCCHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHCCCCCCEEEE
T ss_conf 87408838997089899999997478-----5399978876889997636455648999
No 434
>TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660 Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity.
Probab=26.96 E-value=24 Score=14.88 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHCHHH-HHHHHHHCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCC
Q ss_conf 99999999860898289997747883439998-9999996887417813763233556643-455868808988763235
Q gi|254780666|r 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV-VQKVLRSSPIPVELVPLNSAYWKSIDMA-MALSPEGWIRITPDMLEK 422 (445)
Q Consensus 345 ~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~v-V~~fL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~r~~P~~~~~ 422 (445)
.+||.+=+..-. =|||+-|+..=--|.+ |+++=-.||..---+|--.......+.+ ..++..-|+|.+|...+.
T Consensus 757 a~lLa~DyGV~s----DvwSvtSf~ELaRdg~dv~R~nlLHP~e~~~vsyVA~~L~~~~aPGv~iA~tDYvra~a~qir~ 832 (905)
T TIGR00759 757 AELLAADYGVAS----DVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAPGVVIASTDYVRAFAEQIRP 832 (905)
T ss_pred HHHHHHHCCCEE----EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCHHHHCHHHHHH
T ss_conf 999875178314----5520587567656789998864258788887648989741279980699852212303576631
Q ss_pred CCCCCC----CCCEE
Q ss_conf 577788----86314
Q gi|254780666|r 423 IDGVSS----GMDGF 433 (445)
Q Consensus 423 ~~~~~~----g~DGF 433 (445)
..|.++ |||||
T Consensus 833 ~VP~~~Y~tLGTDGF 847 (905)
T TIGR00759 833 YVPARKYVTLGTDGF 847 (905)
T ss_pred CCCCCCCEEECCCCC
T ss_conf 278877368315788
No 435
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=26.90 E-value=38 Score=13.37 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=9.1
Q ss_pred CCCCEEEECCCCCCC
Q ss_conf 447668961674211
Q gi|254780666|r 305 KLFDAVLVDAPCSST 319 (445)
Q Consensus 305 ~~fD~iLlDaPCSg~ 319 (445)
+-|.=.+||+--|+-
T Consensus 213 KvYeNlMVDV~vsN~ 227 (291)
T TIGR00274 213 KVYENLMVDVAVSNE 227 (291)
T ss_pred CEECCEEEEHHHHHH
T ss_conf 100150210444346
No 436
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.71 E-value=39 Score=13.35 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=65.1
Q ss_pred CCCCEECCCCCCC-CCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CC
Q ss_conf 1331003556447-0000--10256841000105967987765443204887417720774457743-----------44
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KL 306 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~ 306 (445)
.|+.+|=--|+.| |+.+ .|++.+.+|+.+|.+..+++.+.+.++..|.. ...+..|..+...- +.
T Consensus 5 ~gKvalITGas~GIG~aiA~~la~~Ga~V~l~~r~~~~l~~~~~~i~~~g~~-~~~~~~Dvtd~~~v~~~v~~~~~~~G~ 83 (238)
T PRK07666 5 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARSEENLKAVAKEVEAEGVK-AVIATADVSDYEEVTTAIETLKNGLGS 83 (238)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 9998999163778999999999987998999989999999999999955992-799993079999999999999998199
Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH----HHHHHHHHHHHC--CCCCEEEEE--ECCCCHHHC
Q ss_conf 7668961674211001101103332886677889999----999999999860--898289997--747883439
Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF----QRKLLLQGISFV--KPGGIVVFS--NCSLDKQDS 373 (445)
Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~----Q~~iL~~a~~~l--k~gG~lvYs--TCSi~~eEn 373 (445)
.|.++ .+-|+....| ....++++..+...+ ..-+...+++.+ +.+|.+|-. +..+.+.-+
T Consensus 84 iDiLV-----NNAGi~~~~~--~~~~~~e~~~~~~~vNl~g~~~~~~~~lp~M~~~~~G~IInisS~ag~~~~~~ 151 (238)
T PRK07666 84 IDILI-----NNAGISKFGK--FLELDVAEWEKIIQVNLMGVYYVTRAVLPSMIEQQSGDIINISSTAGQKGAPV 151 (238)
T ss_pred CCEEE-----ECCCCCCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCC
T ss_conf 87899-----8474579998--23399999999998962999999999999999749958999877777067999
No 437
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=26.49 E-value=31 Score=14.01 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=38.9
Q ss_pred HHHC-CCEECCCCCCCCCCCCCCCCCC-CEECCCCCCCCCEEEECCCCCCHHHHHCC-HHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 1100-1013463212322235632133-10035564470000102568410001059-6798776544320488741772
Q gi|254780666|r 218 FAEG-VWWVQDASASIPVQLFGTLNNL-SVLDLCAAPGGKTAQLIVSGAKVTALDVS-KRRLEKLRCNLDRLHLYAEDII 294 (445)
Q Consensus 218 f~eG-~~~VQD~aSql~~~~l~~~~g~-~VLD~CAAPGGKT~~l~~~~~~i~A~D~~-~~Rl~~l~~~~~R~g~~~~~~~ 294 (445)
-+.| ..+|.|---.|...+++.-|.+ .|+= +.|+|.=+..|.. ..--+..+.-+.|+--..+...
T Consensus 187 V~~G~Mlsi~Dv~~~L~i~LiGviPeD~~iI~------------stN~GEP~vl~~~L~~~g~Af~~~ArRi~G~~vpf~ 254 (272)
T TIGR01968 187 VKKGDMLSIDDVLEILSIPLIGVIPEDEEIIV------------STNKGEPVVLNKKLSRAGKAFENIARRILGEEVPFE 254 (272)
T ss_pred HHCCCCCCHHHHHHHCCCCCEEEECCCCCEEE------------EECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 41689827899998608861686329986576------------645614354460026167889999875348864303
No 438
>PRK07583 cytosine deaminase; Validated
Probab=26.48 E-value=35 Score=13.65 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=21.4
Q ss_pred CCCCCCCEEEECCCCCCCCHHHCCCHHHH
Q ss_conf 74344766896167421100110110333
Q gi|254780666|r 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 (445)
Q Consensus 302 ~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w 330 (445)
......|.||+||.|+.. .+.|.|..|.
T Consensus 386 ~~G~~ADlVl~da~~~~e-avar~~~~r~ 413 (437)
T PRK07583 386 AVGAPADLVIFKARSFSE-LLSRPQSDRI 413 (437)
T ss_pred CCCCCCCEEEEECCCHHH-HHHCCCCCCE
T ss_conf 899954289995899899-9835788508
No 439
>PRK13557 histidine kinase; Provisional
Probab=26.45 E-value=36 Score=13.61 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=35.4
Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC---C-CCCCCCCEEEECCC
Q ss_conf 4100010596798776544320488741772077445---7-74344766896167
Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---Y-CPKKLFDAVLVDAP 315 (445)
Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~---~-~~~~~fD~iLlDaP 315 (445)
.+|.-+|=++.-...++..|+++|.. +. ...|+.+ . .....||.||.|.=
T Consensus 414 ~~ILvVDD~~~~r~~~~~~L~~~G~~-v~-~a~~G~eAl~~l~~~~~~Dlvl~D~~ 467 (538)
T PRK13557 414 ETILIVDDRPDVAELARMILEDFGYR-TL-VASNGREALEILESHPEVDLLFTDLI 467 (538)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 25899679899999999999976999-99-98999999999960999889988777
No 440
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=26.43 E-value=39 Score=13.31 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=60.0
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCC---CCCCE--EEEECC--C-CCCCC-CCCCCEEEECCCCCCCCHHHCCCHHH
Q ss_conf 0256841000105967987765443204---88741--772077--4-45774-34476689616742110011011033
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRL---HLYAE--DIIEMD--A-FDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~---g~~~~--~~~~~D--~-~~~~~-~~~fD~iLlDaPCSg~Gt~rr~Pd~~ 329 (445)
+++.+-+|+++|++++|++.+...--.. |+... ...... + .+... -...|.|++-+|.--.. ...||.
T Consensus 19 la~~G~~V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i~~~d~i~I~VpTP~~~--~~~~d~- 95 (185)
T pfam03721 19 LAEIGHDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKANVSGRLRFTTDVAEAIKEADVIFIAVPTPSKK--GGAPDL- 95 (185)
T ss_pred HHHCCCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEECCCCCCC--CCCCCC-
T ss_conf 99489939999799899999862689746758899998734089699878799884498999973687655--767663-
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 32886677889999999999999860898289997747883439998999999688
Q gi|254780666|r 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 330 w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
..+. ..+....+.+++|- ++=..+|+.|--.+.++..++++.+
T Consensus 96 --------s~l~----~~~~~i~~~l~~~~-liii~STVppGtt~~~~~~l~~~~~ 138 (185)
T pfam03721 96 --------TYVE----SAARTIGPVLKKGK-VVVVKSTVPPGTTEEVVKPILEKRS 138 (185)
T ss_pred --------HHHH----HHHHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf --------5999----99999974467998-9999189998868999999999726
No 441
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=26.26 E-value=31 Score=14.06 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=63.4
Q ss_pred EECCCCCC--CCCEEE---E----CCCCCCHHHHHCCHHHHHH-HHHHHHCCCCCC--EEEEECCCCC-C------CCCC
Q ss_conf 00355644--700001---0----2568410001059679877-654432048874--1772077445-7------7434
Q gi|254780666|r 245 VLDLCAAP--GGKTAQ---L----IVSGAKVTALDVSKRRLEK-LRCNLDRLHLYA--EDIIEMDAFD-Y------CPKK 305 (445)
Q Consensus 245 VLD~CAAP--GGKT~~---l----~~~~~~i~A~D~~~~Rl~~-l~~~~~R~g~~~--~~~~~~D~~~-~------~~~~ 305 (445)
|+=+|..- -|||+. | ++.+.+|.-+|-++.+--. -.++..+-|..+ ..+...+... + ....
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~ 82 (231)
T pfam07015 3 LITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGS 82 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHC
T ss_conf 79996179986599999999999996899599996899868899999876468888765222056601589999988657
Q ss_pred CCCEEEECCCCCCCCHHHCC---CH---HHHCCCHHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 47668961674211001101---10---33328866778899999999999--998608982899977478834399989
Q gi|254780666|r 306 LFDAVLVDAPCSSTGTIRRH---PD---VLWTRDTDDIVKSACFQRKLLLQ--GISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445)
Q Consensus 306 ~fD~iLlDaPCSg~Gt~rr~---Pd---~~w~~~~~~l~~l~~~Q~~iL~~--a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445)
.||.|++|-|=+.+-..+.= -| +.-.-++-|+..-.++=+.|.+. +...--|...|.=-|=..-...-...+
T Consensus 83 ~yD~VIIDtpg~~s~~~~~AI~~ADlVLIP~qpSplD~~~a~~t~~~i~~~~~~~~~~ip~avl~tRv~~~~~~~~~~~i 162 (231)
T pfam07015 83 GFDYALADTHGGSSELNNTIIASSDLLLIPTMLTPLDIDEALATYRYVIELLLTENLAIPTAILRQRVPVGRLTSSQRFC 162 (231)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 99989983998575899999997898997789982339999999999999999737899803345511400021789999
Q ss_pred HHHHHHCC
Q ss_conf 99999688
Q gi|254780666|r 378 QKVLRSSP 385 (445)
Q Consensus 378 ~~fL~~~~ 385 (445)
+..++.-|
T Consensus 163 ~e~le~lp 170 (231)
T pfam07015 163 SDMLEQLP 170 (231)
T ss_pred HHHHHCCC
T ss_conf 99996498
No 442
>KOG2920 consensus
Probab=26.25 E-value=21 Score=15.28 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=40.8
Q ss_pred CCCCCEECCCCCCCCCEEEEC-CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 213310035564470000102-5684100010596798776544320488741772077445774344766896
Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI-VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312 (445)
Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~-~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLl 312 (445)
..|++|||+-|++|-+..-.+ .....+...|.+..=++. .++.|+.+.-.....+.....||-|+.
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~-------~t~pn~~~~~~~~~~~~e~~~~~~i~~ 181 (282)
T KOG2920 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRL-------VTLPNILVNSHAGVEEKENHKVDEILN 181 (282)
T ss_pred ECCCEEEECCCCCCCCCHHHHHHCCCEEEEEECCHHHEEE-------ECCCCEECCHHHHHHHHHCCCCEECCC
T ss_conf 4475568637864564166664035323347335112465-------214653302001023441365212123
No 443
>PRK06194 hypothetical protein; Provisional
Probab=25.82 E-value=40 Score=13.23 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=12.9
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHCHHHHHH
Q ss_conf 99999860898289997747883439998999
Q gi|254780666|r 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 (445)
Q Consensus 348 L~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~ 379 (445)
-+....-+..|-..||+ +|+-.+.+-++
T Consensus 243 a~~v~~~i~~~~f~I~~----hp~~~~~~~~r 270 (301)
T PRK06194 243 AQLVFDAIAADRFYIYS----HPQALASVQTR 270 (301)
T ss_pred HHHHHHHHHHCCEEEEC----CCHHHHHHHHH
T ss_conf 99999999709779966----80667999999
No 444
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.77 E-value=40 Score=13.23 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=5.8
Q ss_pred CHHHCHHHHHHHHHH
Q ss_conf 834399989999996
Q gi|254780666|r 369 DKQDSEEVVQKVLRS 383 (445)
Q Consensus 369 ~~eEne~vV~~fL~~ 383 (445)
.|||=-..| .||.+
T Consensus 225 ~peeiA~~v-~FLaS 238 (258)
T PRK06935 225 EPDDLMGAA-VFLAS 238 (258)
T ss_pred CHHHHHHHH-HHHHC
T ss_conf 899999999-99838
No 445
>pfam01959 DHQS 3-dehydroquinate synthase (EC 4.6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides.
Probab=25.73 E-value=39 Score=13.28 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=33.4
Q ss_pred HHHCCCEECCCCCCCCCCCCCCCC--CCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHH
Q ss_conf 110010134632123222356321--3310035564470000102--56841000105967
Q gi|254780666|r 218 FAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKR 274 (445)
Q Consensus 218 f~eG~~~VQD~aSql~~~~l~~~~--g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~ 274 (445)
|..|.|-|..+.-..+=-...|.. -.-|=-+|-.|||||..|. ..+..|.++|.+.+
T Consensus 202 ~s~~lfLVhsEt~~s~Yv~~RPFRVNAGaVHaYv~~p~g~T~YLsEL~sGdeVlvvd~~G~ 262 (343)
T pfam01959 202 SSRGLFLVHSETLESPYVASRPFRVNAGAVHAYVRVPGGKTRYLSELKAGDEVLVVDADGR 262 (343)
T ss_pred CCCEEEEEEECCCCCCCCCCCCEEECCCCEEEEEECCCCCEEEEHHHCCCCEEEEEECCCC
T ss_conf 3662799981333688878997233177305799828993787302058986999978998
No 446
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=25.66 E-value=40 Score=13.21 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=19.2
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 025684100010596798776544320488741772077445
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~ 300 (445)
+++.+.+|+.+|.++.+++.+.+.+ |- .+..+..|.++
T Consensus 26 l~~~Ga~V~~~~r~~~~l~~~~~~~---~~-~~~~~~~Dv~~ 63 (263)
T PRK06200 26 FLAEGARVAVLERSAEKCASLRQRF---GD-DVLVVEGDVTS 63 (263)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHH---CC-CEEEEECCCCC
T ss_conf 9987999999979999999999981---88-64687179999
No 447
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=25.63 E-value=40 Score=13.21 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 34476689616742110011011033328-86677889999999999999860898289997747883439998999999
Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~-~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445)
.+.|-..-+++|| ..++|+.||+. +++|++....++. .+.+ .-|++. -++|-.||.
T Consensus 168 P~~fk~~~l~~p~-----~~~~~~~RltvDt~eD~~~~~~vye--------~~~~------~~~~~~----~d~iid~ld 224 (241)
T COG1861 168 PERFKVAYLEAPE-----AWKRPDYRLTVDTQEDFALAKAVYE--------YFCP------ENPDFT----LDNIIDFLD 224 (241)
T ss_pred CCEEEEEEECCHH-----HCCCCCEEEEECCHHHHHHHHHHHH--------HHCC------CCCCCC----HHHHHHHHH
T ss_conf 7607897654732-----2268764788463999999999999--------7174------689975----899999996
Q ss_pred HCCC
Q ss_conf 6887
Q gi|254780666|r 383 SSPI 386 (445)
Q Consensus 383 ~~~~ 386 (445)
++|+
T Consensus 225 ~npd 228 (241)
T COG1861 225 KNPD 228 (241)
T ss_pred CCCH
T ss_conf 3924
No 448
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.61 E-value=40 Score=13.21 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=7.5
Q ss_pred CCCCCHHHHHCCHHHHHHHH
Q ss_conf 56841000105967987765
Q gi|254780666|r 261 VSGAKVTALDVSKRRLEKLR 280 (445)
Q Consensus 261 ~~~~~i~A~D~~~~Rl~~l~ 280 (445)
+.+++|+.+|.+..+++...
T Consensus 31 ~~Ga~Vvi~~r~~~~l~~~~ 50 (251)
T PRK07523 31 QAGAEVILNGRDAAKLAAAA 50 (251)
T ss_pred HCCCEEEEEECCHHHHHHHH
T ss_conf 87999999969989999999
No 449
>pfam06801 consensus
Probab=25.58 E-value=23 Score=14.98 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=6.4
Q ss_pred EEEEECCCCH
Q ss_conf 9997747883
Q gi|254780666|r 361 VVFSNCSLDK 370 (445)
Q Consensus 361 lvYsTCSi~~ 370 (445)
..|+|||++|
T Consensus 87 ~ty~~csllp 96 (96)
T pfam06801 87 FTYRTCSLLP 96 (96)
T ss_pred CCCEEEECCC
T ss_conf 3210200389
No 450
>PRK12747 short chain dehydrogenase; Provisional
Probab=25.39 E-value=41 Score=13.18 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=3.5
Q ss_pred HHHHCCCCCEE
Q ss_conf 99860898289
Q gi|254780666|r 351 GISFVKPGGIV 361 (445)
Q Consensus 351 a~~~lk~gG~l 361 (445)
+++.++.+|.+
T Consensus 130 ~~~~m~~~g~I 140 (252)
T PRK12747 130 ALSRLRDNSRI 140 (252)
T ss_pred HHHHHHHCCCC
T ss_conf 99999766975
No 451
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=25.36 E-value=41 Score=13.18 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=18.4
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 1000105967987765443204887417720774
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~ 298 (445)
+++|.|.+...++..-..+..+|++|+-++.+|.
T Consensus 64 Hltcr~~n~~~l~~~L~~~~~~Gi~niLaLrGD~ 97 (274)
T cd00537 64 HLTCRDRNRIELQSILLGAHALGIRNILALRGDP 97 (274)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8601789999999999999985986388735888
No 452
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=25.07 E-value=41 Score=13.14 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=32.8
Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC---CCCCCCCCCEEEECCC
Q ss_conf 410001059679877654432048874177207744---5774344766896167
Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---DYCPKKLFDAVLVDAP 315 (445)
Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~---~~~~~~~fD~iLlDaP 315 (445)
.+|.-+|=++--...++.-++++|.. +. ...|+. +......||.||.|.=
T Consensus 959 l~ILvVeDn~~Nr~ll~~~L~~lG~~-v~-~a~nG~eAl~~~~~~~fDlILmDi~ 1011 (1197)
T PRK09959 959 LSILIADDHPTNRLLLKRQLNLLGYD-VD-EATDGVQALHKVSMQHYDLLITDVN 1011 (1197)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHCCCCCEEEECCC
T ss_conf 87999799899999999999983999-99-9899999999976699999998797
No 453
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=24.91 E-value=42 Score=13.12 Aligned_cols=120 Identities=11% Similarity=-0.036 Sum_probs=72.4
Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC---CCCC--CCCCCE---EEEC---CCCCCCCH-HHCCCHHHHC
Q ss_conf 410001059679877654432048874177207744---5774--344766---8961---67421100-1101103332
Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---DYCP--KKLFDA---VLVD---APCSSTGT-IRRHPDVLWT 331 (445)
Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~---~~~~--~~~fD~---iLlD---aPCSg~Gt-~rr~Pd~~w~ 331 (445)
.+++|.|.+...++..-+.+..+|+.++-.+.+|.. .+.. ....|. |-.+ -.|-|.+. -.+||+.+
T Consensus 82 ~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~-- 159 (291)
T COG0685 82 PHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESK-- 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCH--
T ss_conf 475146889899999999999818855999458987778878654689999999998568973589986788784410--
Q ss_pred CCHHHHHHHHH-H---------H----HHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC
Q ss_conf 88667788999-9---------9----99999999860898289997747883439998999999688
Q gi|254780666|r 332 RDTDDIVKSAC-F---------Q----RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445)
Q Consensus 332 ~~~~~l~~l~~-~---------Q----~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445)
-...|+.++.+ + | .+.+..-...++..|.=+.....|.|--|..++.+|-+..+
T Consensus 160 ~~~~d~~~lkrKv~aGAd~~iTQ~~fd~e~~~~~~~~~~~~g~~~pI~~Gimpi~~~~~~~~~~~~~~ 227 (291)
T COG0685 160 DVKEDIKRLKRKVDAGADFFITQFFFDVEAFERFAERVRAAGIDIPIIPGIMPVTNFKQLLRFASLCG 227 (291)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHCC
T ss_conf 05789999999986588657642016899999999999863899855621310135689999998339
No 454
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=24.84 E-value=42 Score=13.11 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-----CCCCCCEEEECCCCCCCCHHHCC
Q ss_conf 4470000102568410001059679877654432048874177207744577-----43447668961674211001101
Q gi|254780666|r 251 APGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFDAVLVDAPCSSTGTIRRH 325 (445)
Q Consensus 251 APGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-----~~~~fD~iLlDaPCSg~Gt~rr~ 325 (445)
-|+-|+.-+.-+.++ +.|..-++.+++.++..|++-++....+.-+.. -.++-|.|+. ||+.+=.-
T Consensus 156 ~Pnak~Igv~Y~p~E----~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~--p~dn~i~s--- 226 (322)
T COG2984 156 LPNAKSIGVLYNPGE----ANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYI--PTDNLIVS--- 226 (322)
T ss_pred CCCCEEEEEEECCCC----CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEE--ECCHHHHH---
T ss_conf 788706999957988----660899999999998779889998347632008999973478767998--66067788---
Q ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH----CHHHHHHHHH-HCCC
Q ss_conf 10333288667788999999999999986089828999774788343----9998999999-6887
Q gi|254780666|r 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD----SEEVVQKVLR-SSPI 386 (445)
Q Consensus 326 Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE----ne~vV~~fL~-~~~~ 386 (445)
.-+.-+..--+-..-++...-.+++.|+. ++|++...+ .-.+|.++|+ ++|.
T Consensus 227 ------~~~~l~~~a~~~kiPli~sd~~~V~~Ga~---aA~gvdy~~~G~qtg~~v~~ILkG~~p~ 283 (322)
T COG2984 227 ------AIESLLQVANKAKIPLIASDTSSVKEGAL---AALGVDYKDLGKQTGEMVVKILKGKKPK 283 (322)
T ss_pred ------HHHHHHHHHHHHCCCEECCCHHHHHCCCC---EEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ------89999999887089735477788766860---3660679998899999999997699955
No 455
>PRK13663 hypothetical protein; Provisional
Probab=24.65 E-value=42 Score=13.08 Aligned_cols=33 Identities=6% Similarity=-0.073 Sum_probs=19.2
Q ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 110333288667788999999999999986089
Q gi|254780666|r 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 (445)
Q Consensus 325 ~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~ 357 (445)
=||-..-++|+-++-.+.+-.+.|.+--..|..
T Consensus 394 I~d~i~Lisp~~iepI~~LK~~~Lg~~n~~L~~ 426 (493)
T PRK13663 394 IDDEIHLISPEIVEPIQGLKTNHLGSRNPRLHS 426 (493)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 996556179888767998748875788887677
No 456
>KOG4174 consensus
Probab=24.50 E-value=42 Score=13.06 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHHCCCCCCEEEEECCCCCCCC-----CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 44320488741772077445774-----3447668961674211001101103332886677889999999999999860
Q gi|254780666|r 281 CNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 (445)
Q Consensus 281 ~~~~R~g~~~~~~~~~D~~~~~~-----~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~l 355 (445)
+.++|+|... +...|++.... -..||.|+-.=|-||.|.- +.-| ...+....++=+.-|+.|-.+|
T Consensus 109 ~~Lk~lG~~I--~h~Vdv~sl~~~~~~~~~~~d~IiFNFPH~G~g~~-~e~d------~~~i~~~qkL~rgFle~akemL 179 (282)
T KOG4174 109 EALKRLGGTI--LHGVDVTSLKFHADLRLQRYDNIIFNFPHSGKGIK-FEQD------RNIIPLHQKLFRGFLESAKEML 179 (282)
T ss_pred HHHHHCCCCE--EECCCCEEEEECCCCCCCCCCEEEECCCCCCCCCC-CCCC------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999819925--72013425773320134510158981787887754-2111------3778999999999999999987
Q ss_pred C-CCCEEEEEECCCCHHHCHHHHHHHHHHC
Q ss_conf 8-9828999774788343999899999968
Q gi|254780666|r 356 K-PGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445)
Q Consensus 356 k-~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445)
+ .-|.++-.--+..|- |-..|+ +|++.
T Consensus 180 ~~edGeI~itlk~t~P~-~~W~ik-~Lak~ 207 (282)
T KOG4174 180 KDEDGEIHITLKTTYPF-NPWNIK-FLAKE 207 (282)
T ss_pred HHCCCCEEEEECCCCCC-CHHHHH-HHHHH
T ss_conf 73278289986057888-614266-76553
No 457
>PRK10458 DNA cytosine methylase; Provisional
Probab=24.45 E-value=42 Score=13.06 Aligned_cols=23 Identities=26% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHCCCCCCEECCCCCCHHHCHH
Q ss_conf 21023566111045678555850
Q gi|254780666|r 195 AVMLPTGGIRLKELPESIVSLPG 217 (445)
Q Consensus 195 ~~~~~~~~~~~~~~~~~i~~~~~ 217 (445)
...+|...+.+...|....+..|
T Consensus 167 ~~~iP~~dil~aGFPCQ~fS~aG 189 (470)
T PRK10458 167 RQHIPDHDVLLAGFPCQPFSLAG 189 (470)
T ss_pred CCCCCCCCEEECCCCCCHHHHHC
T ss_conf 14699616773178996354543
No 458
>pfam11219 DUF3014 Protein of unknown function (DUF3014). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=24.43 E-value=18 Score=15.76 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH
Q ss_conf 11033328866778899999999999998608982899977478834399989999996
Q gi|254780666|r 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445)
Q Consensus 325 ~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445)
+|.+.|......++.|...|++||.-. -||...|+..|.+
T Consensus 116 ~~~v~Y~yaDp~LEaL~~~QK~LlRMG-------------------PeN~~~vKaklre 155 (158)
T pfam11219 116 RPSVRYKFADPQLEALSAAQKLLLRMG-------------------PENARKVKAKLRE 155 (158)
T ss_pred CCCEEEEECCHHHHCCCHHHHHHHHCC-------------------HHHHHHHHHHHHH
T ss_conf 066689975843422868889999708-------------------8889999999999
No 459
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.43 E-value=42 Score=13.05 Aligned_cols=19 Identities=11% Similarity=-0.155 Sum_probs=8.0
Q ss_pred HHHHHHHHHHCC-CCCCCCH
Q ss_conf 999999998428-8100488
Q gi|254780666|r 62 RIDAVLDFVLIS-SLPRKKY 80 (445)
Q Consensus 62 ~ld~il~~~~~~-~~~~~~~ 80 (445)
.++.+-++.+.. .++.++|
T Consensus 51 fi~~ikera~g~ev~~~l~p 70 (451)
T COG0541 51 FIKRIKERALGEEVPKGLTP 70 (451)
T ss_pred HHHHHHHHHCCCCCCCCCCH
T ss_conf 99999998614667888998
No 460
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=24.41 E-value=40 Score=13.22 Aligned_cols=48 Identities=19% Similarity=0.077 Sum_probs=28.3
Q ss_pred HHCCHHHHHHHHHHHHCCCCCCEEEEECCC---CCCCCCCCCCEEEECCCCCC
Q ss_conf 105967987765443204887417720774---45774344766896167421
Q gi|254780666|r 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSS 318 (445)
Q Consensus 269 ~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~---~~~~~~~~fD~iLlDaPCSg 318 (445)
+|=++.=.+.+++-+++.|.. +. ...|+ ........||.|++|.-..+
T Consensus 3 VDD~~~~~~~l~~~L~~~g~~-v~-~a~~g~~al~~~~~~~~dlvi~D~~mP~ 53 (113)
T cd00156 3 VDDDPLIRELLRRLLEKEGYE-VV-EAEDGEEALALLAEEKPDLILLDIMMPG 53 (113)
T ss_pred ECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 927299999999999988999-99-9899999999987579999997799989
No 461
>KOG3349 consensus
Probab=24.36 E-value=39 Score=13.35 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=14.3
Q ss_pred HHCCCCCEEEEEECCCCHH
Q ss_conf 8608982899977478834
Q gi|254780666|r 353 SFVKPGGIVVFSNCSLDKQ 371 (445)
Q Consensus 353 ~~lk~gG~lvYsTCSi~~e 371 (445)
+-+..-|+|.|.|||-+++
T Consensus 121 ~qL~~egyL~~C~ps~L~~ 139 (170)
T KOG3349 121 KQLAEEGYLYYCTPSTLPA 139 (170)
T ss_pred HHHHHCCCEEEEECCCHHH
T ss_conf 9998659689960565678
No 462
>PRK05875 short chain dehydrogenase; Provisional
Probab=24.34 E-value=42 Score=13.04 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999608999999999
Q gi|254780666|r 45 DQILVRAIVNVTLRFLPRIDAVLDF 69 (445)
Q Consensus 45 Dr~~~~~Lv~gvlR~~~~ld~il~~ 69 (445)
|..-+.+++-.+..+.+.+|-+++.
T Consensus 70 ~~~~v~~~v~~~~~~~g~iD~LVnn 94 (277)
T PRK05875 70 NEDEVARAVDAATAWHGRLHGVVHC 94 (277)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999999984995399987
No 463
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=24.31 E-value=42 Score=13.07 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHCCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf 8608982899977478834399989999
Q gi|254780666|r 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445)
Q Consensus 353 ~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445)
..++.||- +. +..+++..
T Consensus 312 e~~~~G~~-------~~---G~~i~~~m 329 (382)
T cd06371 312 NARAAGGG-------VS---GANLAQHT 329 (382)
T ss_pred HHHHCCCC-------CC---HHHHHHHH
T ss_conf 99975899-------77---89999874
No 464
>PRK06346 consensus
Probab=23.93 E-value=43 Score=12.99 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=25.9
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 0256841000105967987765443204887417720774457
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~ 301 (445)
+++.+++|+-+|++..+++.+.+.+...|.. +..+..|..+.
T Consensus 25 la~~Ga~V~i~~r~~e~~~~~~~~l~~~~~~-~~~~~~Dv~~~ 66 (251)
T PRK06346 25 FAKEGAKVVVADLNLERAQKVVEEITSNGGT-AIAVVANVTKQ 66 (251)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCE-EEEEECCCCCH
T ss_conf 9987998999979899999999999963990-89997788989
No 465
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=23.92 E-value=43 Score=12.99 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=9.2
Q ss_pred CCCCCEEEECCCCCC
Q ss_conf 344766896167421
Q gi|254780666|r 304 KKLFDAVLVDAPCSS 318 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg 318 (445)
.+.|+-.+||+--|+
T Consensus 215 GKvy~NlMVDv~atN 229 (298)
T COG2103 215 GKVYGNLMVDVKATN 229 (298)
T ss_pred CCCCCCEEEEEECCH
T ss_conf 211056578753463
No 466
>KOG0725 consensus
Probab=23.59 E-value=44 Score=12.94 Aligned_cols=29 Identities=38% Similarity=0.390 Sum_probs=12.7
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 02568410001059679877654432048
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g 287 (445)
++..+.+|+-++.+..+++.....+...+
T Consensus 28 la~~Ga~v~i~~r~~~~~~~~~~~~~~~~ 56 (270)
T KOG0725 28 LAKAGAKVVITGRSEERLEETAQELGGLG 56 (270)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 99879989998454566677899987436
No 467
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=23.54 E-value=44 Score=12.94 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=61.0
Q ss_pred CCCCCCCCEECCCCCCCCCEE--EECCC-CCCHHHHHCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCC-CCCEEE
Q ss_conf 563213310035564470000--10256-84100010596798776544320-48874177207744577434-476689
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTA--QLIVS-GAKVTALDVSKRRLEKLRCNLDR-LHLYAEDIIEMDAFDYCPKK-LFDAVL 311 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~--~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R-~g~~~~~~~~~D~~~~~~~~-~fD~iL 311 (445)
-.+.|+++||=+-||--+|+. .|... +-.|+-.=....|.+.|-+.+++ ++.+.-+++.....+..... +||.|+
T Consensus 116 ~~l~~~~~~li~GAGGAa~a~a~~L~~~t~~~~~i~NRT~~ka~~La~~~~~kln~~~G~~~~~~~~~~~l~~G~~DlII 195 (286)
T TIGR00507 116 SKLKPNQRVLIIGAGGAAKAVALELLKATDCNVIIANRTVEKAEELAERFQRKLNKKYGEIQAFSLDEVPLHKGKVDLII 195 (286)
T ss_pred HCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEE
T ss_conf 03689977999942867899999998600997899828778999999998988534248536521133555578567998
Q ss_pred ECCCCCCCCHHHCCCHHH
Q ss_conf 616742110011011033
Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVL 329 (445)
Q Consensus 312 lDaPCSg~Gt~rr~Pd~~ 329 (445)
==-|-|=+|-+- +|.+.
T Consensus 196 NATs~G~~~~~~-~~~v~ 212 (286)
T TIGR00507 196 NATSAGMSGNID-EPPVP 212 (286)
T ss_pred ECCCCCCCCCCC-CCCCC
T ss_conf 546778888988-74568
No 468
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.36 E-value=39 Score=13.33 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=46.5
Q ss_pred HHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE-----CC----CCCCHHHHHCCHHHHHHHHHHHHC-CCC
Q ss_conf 10010134632123222356321331003556447000010-----25----684100010596798776544320-488
Q gi|254780666|r 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----IV----SGAKVTALDVSKRRLEKLRCNLDR-LHL 288 (445)
Q Consensus 219 ~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l-----~~----~~~~i~A~D~~~~Rl~~l~~~~~R-~g~ 288 (445)
.+|..+|.++|+.+...--...+|..|.=.| -|.+-+.+ .. ...+-.+.-++.+|+..+-.-+++ +|+
T Consensus 272 ~~GL~eV~npS~lFL~er~~~~~GS~v~~~~--EGtRpllvEvQALv~~s~~~nPrR~~~G~D~nRl~mllAVLek~~gl 349 (456)
T COG1066 272 ENGLREVSNPSALFLSERGEQTPGSAVVVVM--EGTRPLLVEIQALVSPSSFGNPRRVAVGLDQNRLAMLLAVLEKRLGL 349 (456)
T ss_pred CCCEEEECCCHHHHHHCCCCCCCCCEEEEEE--ECCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 3884680382786742267789986799999--62663598861203666688870276053755899999999986198
No 469
>KOG0024 consensus
Probab=23.36 E-value=28 Score=14.36 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHH
Q ss_conf 222356321331003556447000010---2568410001059679877654
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~ 281 (445)
+......++|.+||=+-|||=|=-+.+ +-.-.+|+..|+++.|++..++
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred HHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
T ss_conf 3332476668868997676899999999987498728996067779999998
No 470
>PRK05866 short chain dehydrogenase; Provisional
Probab=23.25 E-value=44 Score=12.90 Aligned_cols=106 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCCC
Q ss_conf 10256841000105967987765443204887417720774457743-----------4476689616742110011011
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHP 326 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~P 326 (445)
++++.+++|+.+|.+..+++.+.+.+...|.. +..+..|..+...- +..|.++--|=-+..+.+--..
T Consensus 59 ~la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~~-~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDiLVNNAG~~~~~~~~~~~ 137 (290)
T PRK05866 59 KFARRGATVVAVARRKDLLDAVADRITAAGGD-AMAIPCDLSDLDAVDALVADVEERIGGVDILINNAGRSIRRPLAESL 137 (290)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH
T ss_conf 99986998999989999999999999964990-89997788989999999999999859988899757666787422215
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEE
Q ss_conf 0333288667788999999999999986089--82899977
Q gi|254780666|r 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKP--GGIVVFSN 365 (445)
Q Consensus 327 d~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~--gG~lvYsT 365 (445)
| .|.--++-+.-...-...+...+.+.++. +|.+|...
T Consensus 138 ~-~~~d~~~~~~vN~~g~~~l~~~~lp~M~~~~~G~IVnis 177 (290)
T PRK05866 138 D-RWHDVERTMVLNYYAPLRLIRGLAPGMIERGDGHIINVA 177 (290)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 7-799999999998399999998750999966996499992
No 471
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.21 E-value=31 Score=14.06 Aligned_cols=76 Identities=24% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEE--ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEE
Q ss_conf 2235632133100355644700001--02568410001059679877654432048874177207744577434476689
Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL 311 (445)
Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~--l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iL 311 (445)
+..+....|++|+=+-.|.-|+++. |.+.+..|+..|.+........+.+...| +.+..........+..||.|+
T Consensus 1 m~~~~~~~~k~i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~l~~~g---i~~~~g~~~~~~~~~~~d~vV 77 (450)
T PRK02472 1 MKTITTFQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPAAQELLEEG---IKVICGSHPLELLDENFDLMV 77 (450)
T ss_pred CCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCC---CEEEECCCHHHHCCCCCCEEE
T ss_conf 97630358998999977899999999999886989998488665798999999679---989978880786057887999
Q ss_pred E
Q ss_conf 6
Q gi|254780666|r 312 V 312 (445)
Q Consensus 312 l 312 (445)
+
T Consensus 78 ~ 78 (450)
T PRK02472 78 K 78 (450)
T ss_pred E
T ss_conf 8
No 472
>KOG0822 consensus
Probab=23.07 E-value=30 Score=14.18 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred CEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCC-CCCCEE
Q ss_conf 000102568410001059679877654432048874-17720774457743-447668
Q gi|254780666|r 255 KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPK-KLFDAV 310 (445)
Q Consensus 255 KT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~-~~fD~i 310 (445)
|++....++.+++|+|+++..+-.|+. .++.+-.+ |.++..|-++|.+. ++.|.+
T Consensus 387 kaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~ 443 (649)
T KOG0822 387 KAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADII 443 (649)
T ss_pred HHHHHHCCCEEEEEEECCCCHHHHHHH-HCHHHHCCEEEEEECCCCCCCCCHHHCCCH
T ss_conf 999872471579999338544042454-243654681699934312468844421203
No 473
>PRK04946 hypothetical protein; Provisional
Probab=23.05 E-value=45 Score=12.87 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=0.0
Q ss_pred EEEECCC-CCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 0898876-32355777888631466765412788
Q gi|254780666|r 412 WIRITPD-MLEKIDGVSSGMDGFFAVALRRLIQP 444 (445)
Q Consensus 412 ~~r~~P~-~~~~~~~~~~g~DGFF~A~l~k~~~~ 444 (445)
|++-.|. ..++..+..||.+|-++.+|+|--+|
T Consensus 145 WL~~~p~VlAF~sA~~~~GG~GA~yVLLkk~e~~ 178 (181)
T PRK04946 145 WLAQHPDVMAFHQAPKEWGGDAALLVLIEIEEWP 178 (181)
T ss_pred HHCCCCCEEEEEECCHHCCCCEEEEEEEECCCCC
T ss_conf 9737852789855780119700799999886657
No 474
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.97 E-value=45 Score=12.86 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCEEEEC--------CCCCC-----HHHHHC-CHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCCCCEEEECCCCC
Q ss_conf 0000102--------56841-----000105-96798776544320488741772077445--77434476689616742
Q gi|254780666|r 254 GKTAQLI--------VSGAK-----VTALDV-SKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCS 317 (445)
Q Consensus 254 GKT~~l~--------~~~~~-----i~A~D~-~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~--~~~~~~fD~iLlDaPCS 317 (445)
|||+-++ ..+.+ +++.|. ...-.+.|+...+.+|+.-..+...+... ......+|.||+|-+
T Consensus 186 GKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D~IlIDTA-- 263 (388)
T PRK12723 186 GKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLIDTI-- 263 (388)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEECC--
T ss_conf 578799999999998626767737999807875889999999999978806985788999999997249999999589--
Q ss_pred CCCHHHCCCHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 110011011033328866778899999999
Q gi|254780666|r 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 (445)
Q Consensus 318 g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~i 347 (445)
.|-..+...+.++.++-..+
T Consensus 264 ----------Grs~~d~~~~~el~~~~~~~ 283 (388)
T PRK12723 264 ----------GKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHC
T ss_conf ----------98856899999999999741
No 475
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=22.96 E-value=40 Score=13.26 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=0.0
Q ss_pred CCCCCEEEECCC
Q ss_conf 344766896167
Q gi|254780666|r 304 KKLFDAVLVDAP 315 (445)
Q Consensus 304 ~~~fD~iLlDaP 315 (445)
.+.||.|++|.|
T Consensus 210 ~~~yD~IIiDTP 221 (274)
T TIGR03029 210 MGDYDVVIVDTP 221 (274)
T ss_pred HHHCCEEEEECC
T ss_conf 840999999389
No 476
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=22.86 E-value=37 Score=13.50 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHCCCHHHHCCCHHHHHHHHHHHHHHH------HHHHHHCCCCCEEEEEECC
Q ss_conf 0110110333288667788999999999------9999860898289997747
Q gi|254780666|r 321 TIRRHPDVLWTRDTDDIVKSACFQRKLL------LQGISFVKPGGIVVFSNCS 367 (445)
Q Consensus 321 t~rr~Pd~~w~~~~~~l~~l~~~Q~~iL------~~a~~~lk~gG~lvYsTCS 367 (445)
.||-+|=--++++++.++.+.+....++ .+..+..++.=.+++..||
T Consensus 18 ~WRGKPVfI~rRT~~~i~~~~~~~~~~~~~p~~~~~~~rs~~~e~lV~igvCT 70 (126)
T cd03470 18 EWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICT 70 (126)
T ss_pred EECCEEEEEEECCHHHHHHHHHCCHHHCCCCHHCCCCCCCCCCCEEEEECCCC
T ss_conf 98994899994899999876626153539801223541117875799970336
No 477
>PRK07831 short chain dehydrogenase; Provisional
Probab=22.82 E-value=45 Score=12.84 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCC
Q ss_conf 1025684100010596798776544320-4887417720774457743-----------447668961674211001101
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRH 325 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R-~g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~ 325 (445)
++++.+++|+.+|++.+++....+.+.. .|...+..+..|.++...- ...|.++--|=....+-+-.-
T Consensus 36 ~la~~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNNAG~~~~~~~~e~ 115 (261)
T PRK07831 36 RALEEGADVVISDIHERRLGETADELAAELGLGRVEGVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDM 115 (261)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHC
T ss_conf 99987998999808777789999999984387728999756899999999999999982998699988866899881449
Q ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---CCCCEEE
Q ss_conf 103332886677889999999999999860---8982899
Q gi|254780666|r 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFV---KPGGIVV 362 (445)
Q Consensus 326 Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~l---k~gG~lv 362 (445)
++--| .+-++-...--.-+-..+++.+ +.||.+|
T Consensus 116 ~~e~w---~~~~~vNl~g~~~~~~~~~p~m~~~~~gG~Ii 152 (261)
T PRK07831 116 TDDEW---SRVLDVTLTGTFRATRAALRYMRAAPHGGVIV 152 (261)
T ss_pred CHHHH---HHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999---99861321519999999999999769997898
No 478
>pfam05063 MT-A70 MT-A70. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA:m6A methyl-transferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs.
Probab=22.72 E-value=43 Score=13.01 Aligned_cols=9 Identities=44% Similarity=1.125 Sum_probs=0.0
Q ss_pred CCEEEECCC
Q ss_conf 766896167
Q gi|254780666|r 307 FDAVLVDAP 315 (445)
Q Consensus 307 fD~iLlDaP 315 (445)
||.|+.|+|
T Consensus 1 y~~I~aDPP 9 (176)
T pfam05063 1 FDVIIADPP 9 (176)
T ss_pred CCEEEECCC
T ss_conf 998998199
No 479
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.65 E-value=46 Score=12.81 Aligned_cols=123 Identities=14% Similarity=0.021 Sum_probs=0.0
Q ss_pred CCCCEECCCCCCC-CCEEEE----CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------
Q ss_conf 1331003556447-000010----256841000105967987765443204887417720774457743-----------
Q gi|254780666|r 241 NNLSVLDLCAAPG-GKTAQL----IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----------- 304 (445)
Q Consensus 241 ~g~~VLD~CAAPG-GKT~~l----~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----------- 304 (445)
.|+++|=.-|+.| |....+ .+.++.|+.+..++...+.+++..+..|...+. ..|.++...-
T Consensus 7 ~GK~alVTGaa~g~Gig~aia~~~~~~Ga~V~i~~~~~~~~~~~~~l~~~~g~~~~~--~~Dvt~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVS--ELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHHHHHH
T ss_conf 999899989999668999999999987999999668679999999999843837698--657999999999999999986
Q ss_pred CCCCEEEECCC-CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 44766896167-42110011011033328866778899999999999998608982899977
Q gi|254780666|r 305 KLFDAVLVDAP-CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445)
Q Consensus 305 ~~fD~iLlDaP-CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445)
++.|.++--|. +.......+..|.-+.--...+.-...--..+.+.+.++.+.||.+|..+
T Consensus 85 G~iDiLVnnag~~~~~~~~~~~~d~~~~~~~~~~~~n~~~~~~~~~~a~~~m~~~GsIi~is 146 (260)
T PRK06603 85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLT 146 (260)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99778996442377765677510298999999999998999999999778741797302342
No 480
>TIGR02800 propeller_TolB Tol-Pal system beta propeller repeat protein TolB; InterPro: IPR014167 Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. Escherichia coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggests that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear..
Probab=22.63 E-value=24 Score=14.94 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=0.0
Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCC----CCCEEEE-CCCCC--CHHHHHCCHHHHHHH
Q ss_conf 013463212322235632133100355644----7000010-25684--100010596798776
Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAP----GGKTAQL-IVSGA--KVTALDVSKRRLEKL 279 (445)
Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAP----GGKT~~l-~~~~~--~i~A~D~~~~Rl~~l 279 (445)
++|||.++.-...+.+.. -+|.|| -||.+.+ |..+| .|+-+|++.+.+++|
T Consensus 230 iyv~~L~TG~r~~v~sf~------G~n~AP~fSPDG~~LA~~lS~~Gn~~IY~~dl~~~~~~rl 287 (439)
T TIGR02800 230 IYVQDLATGQREKVASFP------GINGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGGQLTRL 287 (439)
T ss_pred EEEEECCCCCEEEEECCC------CCEECCCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEE
T ss_conf 999921107488987189------8177421769997999998068996469995889802466
No 481
>KOG3124 consensus
Probab=22.58 E-value=26 Score=14.57 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=0.0
Q ss_pred CCCCCCCCCE---EEECCCCCC----HHHHHCCHHHHHHHHH
Q ss_conf 3556447000---010256841----0001059679877654
Q gi|254780666|r 247 DLCAAPGGKT---AQLIVSGAK----VTALDVSKRRLEKLRC 281 (445)
Q Consensus 247 D~CAAPGGKT---~~l~~~~~~----i~A~D~~~~Rl~~l~~ 281 (445)
|.|+-|||-| +|-++++|. +-|++-+..|.+.+.+
T Consensus 225 d~V~SPgG~TI~glh~LE~ggfRs~linaVeaa~~r~~el~~ 266 (267)
T KOG3124 225 DDVCSPGGTTIYGLHALEKGGFRSGLINAVEAATKRARELGK 266 (267)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 788899960478999987388515779999999999998635
No 482
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=22.52 E-value=22 Score=15.10 Aligned_cols=53 Identities=30% Similarity=0.433 Sum_probs=0.0
Q ss_pred CCE-------EEECCCCCCHHHHHCCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 000-------01025684100010596--79877654432048874177207744577434476689616742
Q gi|254780666|r 254 GKT-------AQLIVSGAKVTALDVSK--RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 (445)
Q Consensus 254 GKT-------~~l~~~~~~i~A~D~~~--~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCS 317 (445)
||| ..|++.+-++..+|.+. .-+..+.....+....-.++..+ |.|++|.|-+
T Consensus 12 GKTT~a~NLA~aLa~~g~~vllvD~D~~~~~l~~~~~~~~~~~~~~~~vl~g-----------D~viiD~ppg 73 (179)
T cd02036 12 GKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAG-----------DYILIDSPAG 73 (179)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCHHHCCCCC-----------CEEEEECCCC
T ss_conf 0999999999999977991899958999998366617655665313112669-----------9999979999
No 483
>PRK09019 translation initiation factor Sui1; Validated
Probab=22.35 E-value=39 Score=13.34 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=0.0
Q ss_pred CCCCEEEEEE
Q ss_conf 8982899977
Q gi|254780666|r 356 KPGGIVVFSN 365 (445)
Q Consensus 356 k~gG~lvYsT 365 (445)
+++..|||||
T Consensus 3 ~~ns~lVYST 12 (108)
T PRK09019 3 DSNSRLVYST 12 (108)
T ss_pred CCCCCEEEEC
T ss_conf 8988778979
No 484
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=22.22 E-value=42 Score=13.10 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCCCCEEEECC
Q ss_conf 10001059679877654432048874177207-744577434476689616
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DAFDYCPKKLFDAVLVDA 314 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D~~~~~~~~~fD~iLlDa 314 (445)
+|.-+|-+..=.+.+...++..|......-.+ ++........||.|++|.
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~ 52 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDL 52 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEC
T ss_conf 899995989999999999997899999989999999999757998999979
No 485
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=22.20 E-value=46 Score=12.75 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=0.0
Q ss_pred CCCCCEEEECCCCCC
Q ss_conf 344766896167421
Q gi|254780666|r 304 KKLFDAVLVDAPCSS 318 (445)
Q Consensus 304 ~~~fD~iLlDaPCSg 318 (445)
...||.|++|.|=||
T Consensus 111 ~~~yD~IVvDtpPTG 125 (217)
T cd02035 111 EGLYDVIVFDTAPTG 125 (217)
T ss_pred CCCCCEEEECCCCCH
T ss_conf 489988998289855
No 486
>pfam02442 L1R_F9L Lipid membrane protein of large eukaryotic DNA viruses. The four families of large eukaryotic DNA viruses, Poxviridae, Asfarviridae, Iridoviridae, and Phycodnaviridae, referred to collectively as nucleocytoplasmic large DNA viruses or NCLDV, have all been shown to have a lipid membrane, in spite of the major differences in virion structure. The paralogous genes L1R and F9L encode membrane proteins that have a conserved domain architecture, with a single, C-terminal transmembrane helix, and an N-terminal, multiple-disulfide-bonded domain. The conservation of the myristoylated, disulfide-bonded protein L1R/F9L in most of the NCLDV correlates with the conservation of the thiol-disulfide oxidoreductase E10R which, in vaccinia virus, is required for the formation of disulfide bonds in L1R and F9L.
Probab=22.18 E-value=45 Score=12.87 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred EECCCCCCCCCCCCCCCCCCCEECC-------CCCCCCCEEEE-CCCCCCHHHH
Q ss_conf 1346321232223563213310035-------56447000010-2568410001
Q gi|254780666|r 224 WVQDASASIPVQLFGTLNNLSVLDL-------CAAPGGKTAQL-IVSGAKVTAL 269 (445)
Q Consensus 224 ~VQD~aSql~~~~l~~~~g~~VLD~-------CAAPGGKT~~l-~~~~~~i~A~ 269 (445)
.++|..+-+.-.+-+--.....+|+ |.+|||+...+ .-+.|...+.
T Consensus 101 ~~~~~~~~l~q~C~a~a~~~n~I~Vq~i~i~~c~ap~~~i~~~~~~nsgsa~~n 154 (202)
T pfam02442 101 AVKDFVTELIQTCKASAVVTNSIDVQNIDIGECYAPGGVITDLQFVNSGSAEAN 154 (202)
T ss_pred HCCCCCHHHHHHCCCCEEECCEEEEEEEECCCCCCCCCEEEEEEEEECCCHHHH
T ss_conf 302331067641635215512378888630223489983699999961547776
No 487
>PRK08263 short chain dehydrogenase; Provisional
Probab=22.16 E-value=47 Score=12.75 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-----------CCCCEEEECCCCCCCCHHHCCC
Q ss_conf 10256841000105967987765443204887417720774457743-----------4476689616742110011011
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHP 326 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-----------~~fD~iLlDaPCSg~Gt~rr~P 326 (445)
.+++.+.+|++++.+..+++.+.+... ..+..+..|.++...- +..|.++--|--...|.+-.-+
T Consensus 22 ~la~~G~~Vv~~~R~~~~l~~l~~~~~----~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDiLVNNAG~~~~~~~~e~~ 97 (275)
T PRK08263 22 AALERGDRVVATARDTATLADLAERYG----DALLPLALDVTDRAAVFAAVEQAVKHFGRLDIVVNNAGYGLFGMIEEVT 97 (275)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHCC----CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCC
T ss_conf 999879989999798999999999759----9679999648999999999999999849987899888667888747699
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEE
Q ss_conf 0333288667788999999999999986089--82899977
Q gi|254780666|r 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKP--GGIVVFSN 365 (445)
Q Consensus 327 d~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~--gG~lvYsT 365 (445)
+-.| .+-++-...=...+...+.+.++. +|.+|..+
T Consensus 98 ~~~~---~~~~~vNl~g~~~~~~a~lp~m~~~~~G~Ivnis 135 (275)
T PRK08263 98 ESEA---RAQIDTNVFGALWVTQAVLPYLRAQRSGHIIQIS 135 (275)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEC
T ss_conf 9999---9999986199999876426133516997799945
No 488
>PRK08267 short chain dehydrogenase; Provisional
Probab=21.85 E-value=47 Score=12.70 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------CCCCCCEEEECCCCCCCCHHHCC
Q ss_conf 102568410001059679877654432048874177207744577------------43447668961674211001101
Q gi|254780666|r 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTIRRH 325 (445)
Q Consensus 258 ~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------------~~~~fD~iLlDaPCSg~Gt~rr~ 325 (445)
++++.+.+|+.+|+++.+++.+.+.+ +-.++.....|.++.. ..+..|.++--|=-...|.+-.-
T Consensus 20 ~~a~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~ 96 (258)
T PRK08267 20 LFAARGWRVGAYDINEDGLAALAAEL---GAERAWTGALDVTDRAAWDAALADFCAATGGRLDVLFNNAGILRGGPFEDI 96 (258)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHC
T ss_conf 99987999999988899999999983---699679999117999999999999999958998689988877999882449
Q ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCEEE
Q ss_conf 10333288667788999999999999986089--82899
Q gi|254780666|r 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKP--GGIVV 362 (445)
Q Consensus 326 Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~--gG~lv 362 (445)
++-.| ..-++-...=...+...+.++++. ||.+|
T Consensus 97 ~~e~~---~~~~~vNl~g~~~~~~~~lp~m~~~~~g~Iv 132 (258)
T PRK08267 97 PLEAH---DRVIDINVKGVLNGAYAALPYLKATPGARVI 132 (258)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999---9999997399999999999999977992799
No 489
>KOG1429 consensus
Probab=21.56 E-value=45 Score=12.87 Aligned_cols=101 Identities=15% Similarity=0.030 Sum_probs=0.0
Q ss_pred ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHH
Q ss_conf 02568410001059679877654432048874177207744577434476689616742110011011033328866778
Q gi|254780666|r 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 (445)
Q Consensus 259 l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~ 338 (445)
||..+-+|+|.|......+..-+..- +..+.+++..|....-..+.=...=|-+|||+.+-..+.-+....-.---+.
T Consensus 47 Lm~egh~Via~Dn~ftg~k~n~~~~~--~~~~fel~~hdv~~pl~~evD~IyhLAapasp~~y~~npvktIktN~igtln 124 (350)
T KOG1429 47 LMTEGHEVIALDNYFTGRKENLEHWI--GHPNFELIRHDVVEPLLKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLN 124 (350)
T ss_pred HHHCCCEEEEEECCCCCCHHHCCCCC--CCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf 97468779998313455210021003--6776358973002478887778864226778755235765056652222678
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 899999999999998608982899977478834
Q gi|254780666|r 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445)
Q Consensus 339 ~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445)
+|.-|.+.-+. .|.-|||-+..+
T Consensus 125 --------~lglakrv~aR--~l~aSTseVYgd 147 (350)
T KOG1429 125 --------MLGLAKRVGAR--FLLASTSEVYGD 147 (350)
T ss_pred --------HHHHHHHHCCE--EEEEECCCCCCC
T ss_conf --------88999873766--898640000488
No 490
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=21.52 E-value=45 Score=12.87 Aligned_cols=12 Identities=42% Similarity=1.035 Sum_probs=0.0
Q ss_pred CCCCCEEEECCC
Q ss_conf 344766896167
Q gi|254780666|r 304 KKLFDAVLVDAP 315 (445)
Q Consensus 304 ~~~fD~iLlDaP 315 (445)
.+.||.|++|-|
T Consensus 128 ~~~fD~iiiDTP 139 (207)
T TIGR01007 128 RKYFDYIIIDTP 139 (207)
T ss_pred HCCCCEEEEEEC
T ss_conf 716888999518
No 491
>pfam00106 adh_short short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
Probab=21.29 E-value=48 Score=12.62 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred EECCCCCCHHHHH---CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEE-----ECCCCCCCCHHHCCCHH
Q ss_conf 1025684100010---596798776544320488741772077445774-34476689-----61674211001101103
Q gi|254780666|r 258 QLIVSGAKVTALD---VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL-----VDAPCSSTGTIRRHPDV 328 (445)
Q Consensus 258 ~l~~~~~~i~A~D---~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iL-----lDaPCSg~Gt~rr~Pd~ 328 (445)
++++.++.++..+ .+..+++.+.+.++..|.. +.....|..+... ...++.+. +|.=..+-|+....|
T Consensus 19 ~la~~Ga~~vv~~~r~~~~~~~~~~~~~~~~~g~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~linnAG~~~~~~-- 95 (167)
T pfam00106 19 WLAAEGARHLVLVSRRGDAPGAAELVAELEALGAE-VTVAACDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGP-- 95 (167)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--
T ss_conf 99987994899965996768999999999955985-999984699999999999999997599739998871268986--
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEE
Q ss_conf 33288667788999999999999986089--82899977
Q gi|254780666|r 329 LWTRDTDDIVKSACFQRKLLLQGISFVKP--GGIVVFSN 365 (445)
Q Consensus 329 ~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~--gG~lvYsT 365 (445)
....+++++++...+-..=.-...+.+.| +|.+|..+
T Consensus 96 ~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~~~G~Ii~is 134 (167)
T pfam00106 96 LEELTPERFERVLAPKVTGAWNLHELTLDLDLGAFVLFS 134 (167)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 565269999999999869999999997553589579993
No 492
>PRK13856 two-component response regulator VirG; Provisional
Probab=21.27 E-value=47 Score=12.69 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCCCCEEEEC
Q ss_conf 10001059679877654432048874177207-74457743447668961
Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DAFDYCPKKLFDAVLVD 313 (445)
Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D~~~~~~~~~fD~iLlD 313 (445)
+|.-+|-+..=.+.+...++..|........+ ++........||.|++|
T Consensus 3 ~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlD 52 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVD 52 (241)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 89999698999999999998779999998999999999865999999996
No 493
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=21.22 E-value=48 Score=12.61 Aligned_cols=54 Identities=7% Similarity=-0.050 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHCC-CCCCEEEEEC--CCCCCCCCCCCCEEEEC
Q ss_conf 256841000105967987765443204-8874177207--74457743447668961
Q gi|254780666|r 260 IVSGAKVTALDVSKRRLEKLRCNLDRL-HLYAEDIIEM--DAFDYCPKKLFDAVLVD 313 (445)
Q Consensus 260 ~~~~~~i~A~D~~~~Rl~~l~~~~~R~-g~~~~~~~~~--D~~~~~~~~~fD~iLlD 313 (445)
|...-+|.-+|=++.=.+.+++.+++. |+..+..... +|.......++|.||+|
T Consensus 1 M~~~i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLD 57 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLD 57 (225)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 999886999959899999999999728995499998999999999973599999982
No 494
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit; InterPro: IPR014214 Members of this entry represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation..
Probab=21.20 E-value=49 Score=12.61 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEECCCCCC
Q ss_conf 774344766896167421
Q gi|254780666|r 301 YCPKKLFDAVLVDAPCSS 318 (445)
Q Consensus 301 ~~~~~~fD~iLlDaPCSg 318 (445)
+.|+.++| +||=|||||
T Consensus 74 ~GP~~~LD-~mviaP~TG 90 (188)
T TIGR02852 74 FGPKVPLD-VMVIAPLTG 90 (188)
T ss_pred CCCCCCCC-EEEECCCCC
T ss_conf 97697533-688778862
No 495
>PRK13984 putative oxidoreductase; Provisional
Probab=21.15 E-value=49 Score=12.60 Aligned_cols=152 Identities=17% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHCHHHHHCCCEEC
Q ss_conf 29978999988412679999999961469836676159989999864321023566111045678555850110010134
Q gi|254780666|r 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 (445)
Q Consensus 147 s~P~Wl~~~~~~~~G~~~~~~l~~~~~~p~~l~i~~k~~~~~~~~~L~~~~~~~~~~~~~~~~~~i~~~~~f~eG~~~VQ 226 (445)
..|.|+..-....| +++-.++...|.=|-+.=|+=+..-+-.-.+... .+.+.+......+.+ .+|.+|+..+-
T Consensus 202 ~IP~~i~lv~~G~~--~eA~~~i~~tN~fP~icGRVCP~~CE~aC~~~~~---~~pVaI~~lER~iaD-~a~~~~~~~~~ 275 (604)
T PRK13984 202 QIPDYIKAIYKDDL--EEGLRWLYKTNPLSAVCGRVCTHKCETVCSVGHR---GEPIAIRWLKRYIVD-NVPLEKYEEIL 275 (604)
T ss_pred CHHHHHHHHHCCCH--HHHHHHHHHHCCHHHHHHCCCCCHHHHHHCCCCC---CCCEEECHHHHHHHH-HHHHCCCCCCC
T ss_conf 76899999987899--9999999876880347537898501786328998---998253667888850-79872996567
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCEEE--ECCCCCCHHHHH-----------------CCHHHHHHHHHHHHCCC
Q ss_conf 63212322235632133100355644700001--025684100010-----------------59679877654432048
Q gi|254780666|r 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALD-----------------VSKRRLEKLRCNLDRLH 287 (445)
Q Consensus 227 D~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~--l~~~~~~i~A~D-----------------~~~~Rl~~l~~~~~R~g 287 (445)
..-. +..|++|-=.-|||.|=|+. |+..+-.|+-.| +...-+++=.+.++.+|
T Consensus 276 ~~~~--------~~tGKKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~G 347 (604)
T PRK13984 276 DIKP--------PKKGKKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALG 347 (604)
T ss_pred CCCC--------CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 8998--------87899899989868999999999986986899745677897233158722287899999999999729
Q ss_pred CCC-EEEEECCCCCCCC-CCCCCEEEE
Q ss_conf 874-1772077445774-344766896
Q gi|254780666|r 288 LYA-EDIIEMDAFDYCP-KKLFDAVLV 312 (445)
Q Consensus 288 ~~~-~~~~~~D~~~~~~-~~~fD~iLl 312 (445)
+.- ..+..+.-..+.. .+.||.|+|
T Consensus 348 V~f~~n~~VGkDit~eeL~~~yDAVfL 374 (604)
T PRK13984 348 VKIHTNTRVGKDISLEELREKHDAVFV 374 (604)
T ss_pred CEEECCCEECCCCCHHHHHHCCCEEEE
T ss_conf 899768577984789999705899999
No 496
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=21.13 E-value=49 Score=12.60 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCCCCEEEEC
Q ss_conf 2568410001059679877654432048874177207-74457743447668961
Q gi|254780666|r 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DAFDYCPKKLFDAVLVD 313 (445)
Q Consensus 260 ~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D~~~~~~~~~fD~iLlD 313 (445)
|.....|.-+|-...-...+...+++.|......... ++...-....||.|++|
T Consensus 1 ~~~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~D 55 (464)
T COG2204 1 MMMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLD 55 (464)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 9876878999297899999999999769748985899999999862899989981
No 497
>PRK06114 short chain dehydrogenase; Provisional
Probab=21.09 E-value=49 Score=12.60 Aligned_cols=131 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCC-CCEEE--ECCCCCCHHHHHC-CHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 632123222356321331003556447-00001--0256841000105-9679877654432048874177207744577
Q gi|254780666|r 227 DASASIPVQLFGTLNNLSVLDLCAAPG-GKTAQ--LIVSGAKVTALDV-SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 (445)
Q Consensus 227 D~aSql~~~~l~~~~g~~VLD~CAAPG-GKT~~--l~~~~~~i~A~D~-~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~ 302 (445)
+.-+|-+..+++.+ |+.+|=--|+.| |+... +++.+++|+.+|+ ++..++...+.++..|.. ...+..|.++..
T Consensus 2 ~~~~m~~~~lf~L~-gKvalVTGa~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~Dvt~~~ 79 (262)
T PRK06114 2 SDITLNAPKLFDLD-GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRR-AIQIAADVTSKS 79 (262)
T ss_pred CCCCCCCCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCCHH
T ss_conf 87777962124989-9989996847899999999999879989999589746999999999965995-899981689999
Q ss_pred CC-----------CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCEEE
Q ss_conf 43-----------44766896167421100110110333288667788999999999999986089--82899
Q gi|254780666|r 303 PK-----------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP--GGIVV 362 (445)
Q Consensus 303 ~~-----------~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~--gG~lv 362 (445)
.- +.-|.++--|--+..+.+-.-++--| .+-+.-...=-.-+...+.+.+++ +|.+|
T Consensus 80 ~v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~~e~w---~~~~~vNl~g~f~~~~~~~~~m~~~~~G~IV 149 (262)
T PRK06114 80 DLAAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQW---QTVMDINLTGVFLSCQAEARAMLENGGGSIV 149 (262)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999999998199989998998999988155999999---9999997366999999999999972897899
No 498
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR; InterPro: IPR014160 The members of this entry from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterised nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologues, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologues not in this entry have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel..
Probab=21.08 E-value=49 Score=12.59 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 899999999984288100488999999999999
Q gi|254780666|r 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQ 92 (445)
Q Consensus 60 ~~~ld~il~~~~~~~~~~~~~~~~~iLr~a~~e 92 (445)
...||.+++ .++.....--+|.|||.|+-|
T Consensus 12 l~~LD~~~~---~~GYqnRSEAiRDLlR~Gl~q 41 (130)
T TIGR02793 12 LEVLDRLIA---TRGYQNRSEAIRDLLRAGLQQ 41 (130)
T ss_pred HHHHHHHHH---HCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999987---308898017999999988878
No 499
>pfam09189 DUF1952 Domain of unknown function (DUF1952). Members of this family are found in various Thermus thermophilus proteins. Their exact function has not, as yet, been determined.
Probab=21.07 E-value=49 Score=12.59 Aligned_cols=14 Identities=36% Similarity=0.843 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHCCC
Q ss_conf 99789999884126
Q gi|254780666|r 148 IPEWFKERLENFYG 161 (445)
Q Consensus 148 ~P~Wl~~~~~~~~G 161 (445)
+|.|+.++....||
T Consensus 9 ~ppwl~e~yl~~wg 22 (78)
T pfam09189 9 FPPWLLERYLEEWG 22 (78)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 88799999999847
No 500
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=21.00 E-value=49 Score=12.58 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCCCC-CEEE-----ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECCC
Q ss_conf 64470-0001-----0256841000105967987765443204887417720774457743-44766896167
Q gi|254780666|r 250 AAPGG-KTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAP 315 (445)
Q Consensus 250 AAPGG-KT~~-----l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-~~fD~iLlDaP 315 (445)
||+|| ||+- ++.-.|.+++.|.|..=.....+.-..+| -++++.|+++.... +.-|.|.-+-|
T Consensus 230 AGSGGyKTTs~vIPT~L~y~G~lVvlDPs~Evapmv~~~Rr~~g---r~V~~ldP~~~~~gFN~Ldwi~~~~~ 299 (645)
T PRK13822 230 AGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRGAG---RKVIVLDPTNPRTGFNVLDWIGRSGG 299 (645)
T ss_pred ECCCCCCCCCEECCCEECCCCCEEEECCCCCCHHHHHHHHHHCC---CCEEEECCCCCCCCCCHHHHHHCCCC
T ss_conf 07998752550446501568877998875220588999999779---95599789998889661245405898
Done!