HHsearch alignment for GI: 254780666 and conserved domain: pfam00398

>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=95.93  E-value=0.0061  Score=41.57  Aligned_cols=128  Identities=15%  Similarity=0.177  Sum_probs=80.0

Q ss_pred             CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCEEE
Q ss_conf             2223563213310035564470000102568410001059679877654432048874177207744577434-476689
Q gi|254780666|r  233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVL  311 (445)
Q Consensus       233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~-~fD~iL  311 (445)
T Consensus        22 Iv~~~~~~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~--~~~~~~ii~~D~l~~d~~~~~~~~vv   99 (258)
T pfam00398        22 IVDKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLA--LHPNVEVVHQDFLKFSFPKHEPFLVV   99 (258)
T ss_pred             HHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCCCCCCCCCEEEE
T ss_conf             9997089999979997996239999999616947999544779999998644--28977999663010575457861689


Q ss_pred             ECCCCCCCCH-HHCCCHHHHCCCHH-HH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
Q ss_conf             6167421100-11011033328866-77-889999999999999860898289997747883
Q gi|254780666|r  312 VDAPCSSTGT-IRRHPDVLWTRDTD-DI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK  370 (445)
Q Consensus       312 lDaPCSg~Gt-~rr~Pd~~w~~~~~-~l-~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~  370 (445)
T Consensus       100 gNLPY~Iss~il~~-----ll~~~~~~~~~~vlmvQkEvA~R---l~a~pg~k~y~~LSv~~  153 (258)
T pfam00398       100 GNIPYNITTPIVKK-----LLFEPRFGRVKMLLVVQKEFARR---LLARPGSKIYSRLTVLT  153 (258)
T ss_pred             ECCCCCCCHHHHHH-----HHHCCCCCCCEEEEEEEHHHHHH---HHCCCCCCCCCHHHHHH
T ss_conf             44886341789999-----99704767204899988999999---85589986513689999