HHsearch alignment for GI: 254780666 and conserved domain: pfam00398
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=95.93 E-value=0.0061 Score=41.57 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCEEE
Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207744577434-476689
Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVL 311 (445)
Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~-~fD~iL 311 (445)
T Consensus 22 Iv~~~~~~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~--~~~~~~ii~~D~l~~d~~~~~~~~vv 99 (258)
T pfam00398 22 IVDKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLA--LHPNVEVVHQDFLKFSFPKHEPFLVV 99 (258)
T ss_pred HHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCCCCCCCCCEEEE
T ss_conf 9997089999979997996239999999616947999544779999998644--28977999663010575457861689
Q ss_pred ECCCCCCCCH-HHCCCHHHHCCCHH-HH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
Q ss_conf 6167421100-11011033328866-77-889999999999999860898289997747883
Q gi|254780666|r 312 VDAPCSSTGT-IRRHPDVLWTRDTD-DI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 (445)
Q Consensus 312 lDaPCSg~Gt-~rr~Pd~~w~~~~~-~l-~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~ 370 (445)
T Consensus 100 gNLPY~Iss~il~~-----ll~~~~~~~~~~vlmvQkEvA~R---l~a~pg~k~y~~LSv~~ 153 (258)
T pfam00398 100 GNIPYNITTPIVKK-----LLFEPRFGRVKMLLVVQKEFARR---LLARPGSKIYSRLTVLT 153 (258)
T ss_pred ECCCCCCCHHHHHH-----HHHCCCCCCCEEEEEEEHHHHHH---HHCCCCCCCCCHHHHHH
T ss_conf 44886341789999-----99704767204899988999999---85589986513689999