HHsearch alignment for GI: 254780666 and conserved domain: pfam01029
>pfam01029 NusB NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.
Probab=99.86 E-value=5.1e-21 Score=175.67 Aligned_cols=124 Identities=31% Similarity=0.385 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHH
Q ss_conf 46999999999999955998899999985112321689889999999999999608999999999842-88100488999
Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQ 83 (445)
Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~~~ 83 (445)
T Consensus 1 ~~aR~~a~q~L~~~~~~~~~~~~~l~~~~~~----~~~~~d~~~~~~l~~gv~~~~~~id~~i~~~~~~~~~~~l~~~~~ 76 (126)
T pfam01029 1 RNARELALQALYAVEERGASLNELLDKLLEA----DLDERDRAFATELVYGVLRNLEELDALIAKLLENWPLERLDPVDR 76 (126)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHH
T ss_conf 9499999999999986098999999999871----898899999999999999989999999998855999666599999
Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999999999986-8997332562258775225875544444310221100
Q gi|254780666|r 84 QLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 (445)
Q Consensus 84 ~iLr~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r 133 (445)
T Consensus 77 ~iLr~a~~El~~~~~~p~~~~InE~v~lak~~~-~~~~~~fvNaVL~~i~r 126 (126)
T pfam01029 77 AILRLAAYELLYLDDIPPHVAINEAVELAKKFG-GEKSAGFVNGVLRKIAR 126 (126)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHC
T ss_conf 999999999985789982445899999999877-88643028999887549