HHsearch alignment for GI: 254780666 and conserved domain: pfam01269

>pfam01269 Fibrillarin Fibrillarin.
Probab=97.75  E-value=0.00084  Score=47.96  Aligned_cols=121  Identities=21%  Similarity=0.177  Sum_probs=86.6

Q ss_pred             CCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCE
Q ss_conf             56321331003556447000010---25684100010596798776544320488741772077445774----344766
Q gi|254780666|r  237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDA  309 (445)
Q Consensus       237 l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~  309 (445)
T Consensus        69 ~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R--~NIvPIl~DAr~P~~Y~~lv~~VD~  146 (229)
T pfam01269        69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKR--PNIVPILEDARHPQKYRMLVEMVDV  146 (229)
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHCCCCCE
T ss_conf             68589987999447779857678872288953999971735578999997427--9944576677875676542556668


Q ss_pred             EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEE---C---CCCHHHCHHHHHHHHH
Q ss_conf             8961674211001101103332886677889999999999999-8608982899977---4---7883439998999999
Q gi|254780666|r  310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI-SFVKPGGIVVFSN---C---SLDKQDSEEVVQKVLR  382 (445)
Q Consensus       310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~-~~lk~gG~lvYsT---C---Si~~eEne~vV~~fL~  382 (445)
T Consensus       147 ifqDva---------Q~----------------~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~  201 (229)
T pfam01269       147 IFADVA---------QP----------------DQARILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLK  201 (229)
T ss_pred             EEECCC---------CH----------------HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             996278---------77----------------78999999999861269889999971342167898999999999998


Q ss_pred             HC
Q ss_conf             68
Q gi|254780666|r  383 SS  384 (445)
Q Consensus       383 ~~  384 (445)
T Consensus       202 ~~  203 (229)
T pfam01269       202 EE  203 (229)
T ss_pred             HC
T ss_conf             76