HHsearch alignment for GI: 254780666 and conserved domain: pfam01269
>pfam01269 Fibrillarin Fibrillarin.
Probab=97.75 E-value=0.00084 Score=47.96 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=86.6
Q ss_pred CCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCE
Q ss_conf 56321331003556447000010---25684100010596798776544320488741772077445774----344766
Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDA 309 (445)
Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~ 309 (445)
T Consensus 69 ~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R--~NIvPIl~DAr~P~~Y~~lv~~VD~ 146 (229)
T pfam01269 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKR--PNIVPILEDARHPQKYRMLVEMVDV 146 (229)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHCCCCCE
T ss_conf 68589987999447779857678872288953999971735578999997427--9944576677875676542556668
Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEE---C---CCCHHHCHHHHHHHHH
Q ss_conf 8961674211001101103332886677889999999999999-8608982899977---4---7883439998999999
Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI-SFVKPGGIVVFSN---C---SLDKQDSEEVVQKVLR 382 (445)
Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~-~~lk~gG~lvYsT---C---Si~~eEne~vV~~fL~ 382 (445)
T Consensus 147 ifqDva---------Q~----------------~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~ 201 (229)
T pfam01269 147 IFADVA---------QP----------------DQARILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLK 201 (229)
T ss_pred EEECCC---------CH----------------HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 996278---------77----------------78999999999861269889999971342167898999999999998
Q ss_pred HC
Q ss_conf 68
Q gi|254780666|r 383 SS 384 (445)
Q Consensus 383 ~~ 384 (445)
T Consensus 202 ~~ 203 (229)
T pfam01269 202 EE 203 (229)
T ss_pred HC
T ss_conf 76