HHsearch alignment for GI: 254780666 and conserved domain: pfam08242

Probab=97.74  E-value=1.5e-05  Score=60.97  Aligned_cols=94  Identities=27%  Similarity=0.402  Sum_probs=68.8

Q ss_pred             ECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCCCCEEEECCCCCCCCH
Q ss_conf             03556447000010256--841000105967987765443204887417720774457--74344766896167421100
Q gi|254780666|r  246 LDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGT  321 (445)
Q Consensus       246 LD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~--~~~~~fD~iLlDaPCSg~Gt  321 (445)
T Consensus         1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~------~~v   74 (98)
T pfam08242         1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVA------SNV   74 (98)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEE------CCC
T ss_conf             98863379999999987899889998598899999999998713453111000000022203589889961------041


Q ss_pred             HHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             1101103332886677889999999999999860898289
Q gi|254780666|r  322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV  361 (445)
Q Consensus       322 ~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~l  361 (445)
T Consensus        75 l~~~~~----------------~~~~l~~~~r~LkpgG~l   98 (98)
T pfam08242        75 LHHLAD----------------PRAVLRNLRRLLKPGGVL   98 (98)
T ss_pred             HHHCCC----------------HHHHHHHHHHHCCCCCCC
T ss_conf             772589----------------999999999974999899