HHsearch alignment for GI: 254780666 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.64 E-value=7.8e-08 Score=77.85 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=96.7
Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCC
Q ss_conf 01346321232223563213310035564470000102---56841000105967987765443204887-417720774
Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDA 298 (445)
Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~ 298 (445)
T Consensus 86 iYpkD~s--~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv 163 (309)
T pfam08704 86 LYTPDIS--LIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDV 163 (309)
T ss_pred ECCCCHH--HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 5560099--99998098999999983678429999999974888659998447899999999998749875058898520
Q ss_pred CCCC----CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEE-EEECCCCHHH
Q ss_conf 4577----434476689616742110011011033328866778899999999999998608-982899-9774788343
Q gi|254780666|r 299 FDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCSLDKQD 372 (445)
Q Consensus 299 ~~~~----~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk-~gG~lv-YsTCSi~~eE 372 (445)
T Consensus 164 ~~~gf~~~~~~~~D~VfLDlp------------~PW---------------~ai~~~~~~Lk~~Gg~l~~f~P~i----- 211 (309)
T pfam08704 164 CKSGFDTEVSNKADAVFLDLP------------APW---------------EAIPHAAKALKVEGGRLCSFSPCI----- 211 (309)
T ss_pred HCCCCCCCCCCCCCEEEECCC------------CHH---------------HHHHHHHHHHCCCCCEEEEECCCH-----
T ss_conf 013666445664358997589------------979---------------988999986068996899991989-----
Q ss_pred CHHHHHHH---HHHCC
Q ss_conf 99989999---99688
Q gi|254780666|r 373 SEEVVQKV---LRSSP 385 (445)
Q Consensus 373 ne~vV~~f---L~~~~ 385 (445)
T Consensus 212 --eQv~r~~~aL~~~g 225 (309)
T pfam08704 212 --EQVQRTCLALAALG 225 (309)
T ss_pred --HHHHHHHHHHHHCC
T ss_conf --99999999999779