BLAST/PSIBLAST alignment of GI: 254780666 and GI: 116254448 at iteration 1
>gi|116254448|ref|YP_770286.1| ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] Length = 460
>gi|115259096|emb|CAK10207.1| putative ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] Length = 460
 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/440 (52%), Positives = 300/440 (68%), Gaps = 4/440 (0%)

Query: 2   KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
           K G+ AR  ++ +L+ V+ +++ L   LD E+G+ A+R L + D+ LVRAI+N TLR LP
Sbjct: 24  KLGLQARAAAAKILAAVVDRKLPLDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLP 83

Query: 62  RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
           RIDA +  +L S LP    +L  +L +  AQILYLDV D++ VDLAVEQA +D  NR FA
Sbjct: 84  RIDAAIAGLLDSPLPEGARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFA 143

Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
           KLVN+ILRR+ REK ++L  I  ++ +P WF  RLE  YG++  LAIS++ + P  IDLT
Sbjct: 144 KLVNAILRRLGREKEQVLADIGKVAPMPAWFIARLEKAYGRDAALAISESQLEPAAIDLT 203

Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
           VK D E WA +LN V+LPTGGIRL      I SL GF EG WWVQDA+ASIP +LFG L 
Sbjct: 204 VKSDPEGWAKRLNGVVLPTGGIRLAAFDGGIPSLEGFDEGAWWVQDAAASIPAKLFGDLA 263

Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
                DLCAAPGGKTAQLI++G  VTALD S+ RL +LR NLDRL L AE  I  D   +
Sbjct: 264 GKRTADLCAAPGGKTAQLILAGGAVTALDQSENRLRRLRSNLDRLGLKAE-TIAADLTTF 322

Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
            P + FDA+L+DAPCSSTGT RRHPDVLWT+  +DI + A  Q +LL   ++ +KPGG +
Sbjct: 323 GPTERFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPGGTL 382

Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
           VFSNCSLD  + E+VV +VL S    VE VP+ +  W  ++   A++P G  R  P ML+
Sbjct: 383 VFSNCSLDPVEGEDVVARVL-SDTDAVERVPIGAGDWPGLE--AAITPLGEFRTLPTMLK 439

Query: 422 KIDGVSSGMDGFFAVALRRL 441
             DG+ SG+DGF+A  LRRL
Sbjct: 440 MPDGIGSGLDGFYAAVLRRL 459