BLAST/PSIBLAST alignment of GI: 254780666 and GI: 116254448 at iteration 1
>gi|116254448|ref|YP_770286.1| ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] Length = 460
>gi|115259096|emb|CAK10207.1| putative ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] Length = 460
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/440 (52%), Positives = 300/440 (68%), Gaps = 4/440 (0%)
Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
K G+ AR ++ +L+ V+ +++ L LD E+G+ A+R L + D+ LVRAI+N TLR LP
Sbjct: 24 KLGLQARAAAAKILAAVVDRKLPLDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLP 83
Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
RIDA + +L S LP +L +L + AQILYLDV D++ VDLAVEQA +D NR FA
Sbjct: 84 RIDAAIAGLLDSPLPEGARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFA 143
Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
KLVN+ILRR+ REK ++L I ++ +P WF RLE YG++ LAIS++ + P IDLT
Sbjct: 144 KLVNAILRRLGREKEQVLADIGKVAPMPAWFIARLEKAYGRDAALAISESQLEPAAIDLT 203
Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
VK D E WA +LN V+LPTGGIRL I SL GF EG WWVQDA+ASIP +LFG L
Sbjct: 204 VKSDPEGWAKRLNGVVLPTGGIRLAAFDGGIPSLEGFDEGAWWVQDAAASIPAKLFGDLA 263
Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
DLCAAPGGKTAQLI++G VTALD S+ RL +LR NLDRL L AE I D +
Sbjct: 264 GKRTADLCAAPGGKTAQLILAGGAVTALDQSENRLRRLRSNLDRLGLKAE-TIAADLTTF 322
Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
P + FDA+L+DAPCSSTGT RRHPDVLWT+ +DI + A Q +LL ++ +KPGG +
Sbjct: 323 GPTERFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPGGTL 382
Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
VFSNCSLD + E+VV +VL S VE VP+ + W ++ A++P G R P ML+
Sbjct: 383 VFSNCSLDPVEGEDVVARVL-SDTDAVERVPIGAGDWPGLE--AAITPLGEFRTLPTMLK 439
Query: 422 KIDGVSSGMDGFFAVALRRL 441
DG+ SG+DGF+A LRRL
Sbjct: 440 MPDGIGSGLDGFYAAVLRRL 459