RPSBLAST alignment for GI: 254780666 and conserved domain: pfam01029
>gnl|CDD|144570 pfam01029, NusB, NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. Length = 126
Score = 76.5 bits (189), Expect = 1e-14
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
NAR ++ L V + SL LLD L +RD+ +V LR L +D
Sbjct: 1 RNARELALQALYAVEERGASLNELLDKL----LEADLDERDRAFATELVYGVLRNLEELD 56
Query: 65 AVLD-FVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
A++ + L R + +LR++ ++LYL D+ + ++ AVE AK+ A
Sbjct: 57 ALIAKLLENWPLERLDPVDRAILRLAAYELLYLDDIPPHVAINEAVELAKK-FGGEKSAG 115
Query: 123 LVNSILRRVSR 133
VN +LR+++R
Sbjct: 116 FVNGVLRKIAR 126