RPSBLAST alignment for GI: 254780666 and conserved domain: TIGR00563

>gnl|CDD|161931 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. Length = 426
 Score =  208 bits (531), Expect = 3e-54
 Identities = 124/393 (31%), Positives = 195/393 (49%), Gaps = 33/393 (8%)

Query: 21  KRISLTCLLDLEYGDSAFRLL-------SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
           + I+   L  LE G S   LL       S +D+ L++ +    LR L ++D ++  ++  
Sbjct: 1   RSIAAQALEQLEQGQSLSNLLPPLQQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMDR 60

Query: 74  SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
            +  K  ++  L+ V + Q+LY  +  +A V   VE AK  K  +    LVN +LRR  R
Sbjct: 61  PMKGKPRTVHYLILVGLYQLLYTRIPAHAAVAETVEGAKAIK-RKGLKGLVNGVLRRFQR 119

Query: 134 EKIELLQ---RIAGISIIPEWFKERL-ENFYGKERVLAISDACISPLYIDLTV---KFDI 186
           E+ ELL     +    + PEW  +RL + + G+ +  +I +A      + L +   K   
Sbjct: 120 EQEELLAEFNALDARYLHPEWLVKRLQKAYPGQWQ--SICEANNQRPPMWLRINRTKHSR 177

Query: 187 ETWAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
           + W   L           L    +RL E P ++ +LPGF EG   VQDASA         
Sbjct: 178 DEWLALLAEAGMKGFPHDLAPDAVRL-ETPAAVHALPGFEEGWVTVQDASAQWVATWLAP 236

Query: 240 LNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
            N  ++LD CAAPGGKT  +  +   A+V ALD+ + RL+++  NL RL L  +     D
Sbjct: 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIK-AETKD 295

Query: 298 A-----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
                   +   + FD +L+DAPCS+TG IRRHPD+ W R   DI + A  Q ++L    
Sbjct: 296 GDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIW 355

Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
             +K GG +V++ CS+  +++ E ++  L+  P
Sbjct: 356 PLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388