Query gi|254780667|ref|YP_003065080.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 14:45:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780667.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1yco_A Branched-chain phospho 9.6 56 0.0016 15.9 -0.6 11 1-11 73-83 (127)
2 >1sng_A COG4826: serine protea 8.1 66 0.002 15.5 -0.7 39 1-39 5-44 (173)
3 >1bts_A BAND 3 anion transport 8.0 1.9E+02 0.0057 13.2 1.7 15 14-28 7-21 (26)
4 >1e0b_A SWI6 protein; chromati 6.3 1.4E+02 0.0042 13.9 0.2 16 18-33 50-65 (68)
5 >1im3_D Cytomegalovirus protei 6.2 1.3E+02 0.0039 14.1 0.0 10 5-14 46-55 (95)
6 >1ybk_A Tetrabrachion; right h 4.4 2.6E+02 0.0077 12.6 0.5 13 7-19 7-19 (52)
7 >2fyu_K Ubiquinol-cytochrome C 4.2 3.4E+02 0.01 12.0 2.0 20 19-38 11-30 (56)
8 >3b4s_A Protein LUXT; APC91483 3.9 3.6E+02 0.011 11.9 1.6 13 14-26 36-48 (55)
9 >2qxf_A Exodeoxyribonuclease I 3.8 2.7E+02 0.0079 12.5 0.2 17 18-34 2-18 (219)
10 >1nxc_A Mannosyl-oligosacchari 3.8 3.1E+02 0.0091 12.2 0.5 14 29-42 48-61 (90)
No 1
>>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} (A:1-94,A:247-279)
Probab=9.62 E-value=56 Score=15.88 Aligned_cols=11 Identities=18% Similarity=0.788 Sum_probs=7.0
Q ss_pred CCCCCCCCCCH
Q ss_conf 93000110220
Q gi|254780667|r 1 MMKGLLHADDI 11 (43)
Q Consensus 1 mmkgllhaddi 11 (43)
+|||++|.+++
T Consensus 73 LMKG~i~T~~l 83 (127)
T 1yco_A 73 LLKGIIQTHTL 83 (127)
T ss_dssp EEECSSCHHHH
T ss_pred EEECCCCCHHH
T ss_conf 97589894676
No 2
>>1sng_A COG4826: serine protease inhibitor; serine protease inhibitor (serpin), native state., hydrolase inhibitor; 1.76A {Thermobifida fusca} (A:1-38,A:174-260,A:323-370)
Probab=8.12 E-value=66 Score=15.51 Aligned_cols=39 Identities=36% Similarity=0.577 Sum_probs=29.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHH-HHHHHH
Q ss_conf 930001102202258999999999811378974-432333
Q gi|254780667|r 1 MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWE-FGRILT 39 (43)
Q Consensus 1 mmkgllhaddiefrftavqrlvfafypsavvwe-fgrilt 39 (43)
|-.|.|..|..||....-.||.-|.-...|+|. |..-.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~T 44 (173)
T 1sng_A 5 MSGGFLRDDHLEFALHLHRRLAEAVPDGEVIWSPFEAHLT 44 (173)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHTSTTCCEEECHCCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECHCCCCCC
T ss_conf 3610455503279999999986019898799868584445
No 3
>>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} (A:)
Probab=8.03 E-value=1.9e+02 Score=13.22 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHCCH
Q ss_conf 589999999998113
Q gi|254780667|r 14 RFTAVQRLVFAFYPS 28 (43)
Q Consensus 14 rftavqrlvfafyps 28 (43)
--||||...||..-.
T Consensus 7 istavqgilfallga 21 (26)
T 1bts_A 7 ISTAVQGILFALLGA 21 (26)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999652
No 4
>>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} (A:)
Probab=6.26 E-value=1.4e+02 Score=13.89 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=13.0
Q ss_pred HHHHHHHHCCHHHHHH
Q ss_conf 9999999811378974
Q gi|254780667|r 18 VQRLVFAFYPSAVVWE 33 (43)
Q Consensus 18 vqrlvfafypsavvwe 33 (43)
.-..|..||.+-++|.
T Consensus 50 cPq~vi~FYE~rL~w~ 65 (68)
T 1e0b_A 50 CPQKMLQFYESHLTFR 65 (68)
T ss_dssp SHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHCEEEE
T ss_conf 4499999988607344
No 5
>>1im3_D Cytomegalovirus protein US2; beta sheet, beta sandwhich, immunoglobulin (IG) fold, immunoglobulin (IG)-like domain, protein complex; 2.20A {Human herpesvirus 5} (D:)
Probab=6.23 E-value=1.3e+02 Score=14.05 Aligned_cols=10 Identities=60% Similarity=1.042 Sum_probs=7.3
Q ss_pred CCCCCCHHHH
Q ss_conf 0110220225
Q gi|254780667|r 5 LLHADDIEFR 14 (43)
Q Consensus 5 llhaddiefr 14 (43)
..||||.||-
T Consensus 46 ~v~a~dvefi 55 (95)
T 1im3_D 46 YVHADDVEFV 55 (95)
T ss_dssp CCCGGGEEEE
T ss_pred EEECCCEEEC
T ss_conf 8974640563
No 6
>>1ybk_A Tetrabrachion; right hand coiled coil, protein binding; HET: BEQ; 1.45A {Staphylothermus marinus} PDB: 1fe6_A (A:)
Probab=4.35 E-value=2.6e+02 Score=12.58 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 1022022589999
Q gi|254780667|r 7 HADDIEFRFTAVQ 19 (43)
Q Consensus 7 haddiefrftavq 19 (43)
.||||-+|.|..-
T Consensus 7 taddivyrltvii 19 (52)
T 1ybk_A 7 TADDIVYRLTVII 19 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEE
T ss_conf 4331168999998
No 7
>>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa protein; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} (K:)
Probab=4.20 E-value=3.4e+02 Score=12.03 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=14.9
Q ss_pred HHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999981137897443233
Q gi|254780667|r 19 QRLVFAFYPSAVVWEFGRIL 38 (43)
Q Consensus 19 qrlvfafypsavvwefgril 38 (43)
-.++-+|-||++.|-..--+
T Consensus 11 ~~ia~~wips~~~~G~ag~l 30 (56)
T 2fyu_K 11 RQLARNWVPTASLWGAVGAV 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999870235655222131
No 8
>>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633} (A:1-55)
Probab=3.90 E-value=3.6e+02 Score=11.90 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 5899999999981
Q gi|254780667|r 14 RFTAVQRLVFAFY 26 (43)
Q Consensus 14 rftavqrlvfafy 26 (43)
.|.|+-||+|---
T Consensus 36 eF~AILRLlFhHi 48 (55)
T 3b4s_A 36 EFLAILRLLFHHI 48 (55)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999988
No 9
>>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, product bound structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli K12} (A:139-357)
Probab=3.85 E-value=2.7e+02 Score=12.54 Aligned_cols=17 Identities=29% Similarity=0.639 Sum_probs=12.8
Q ss_pred HHHHHHHHCCHHHHHHH
Q ss_conf 99999998113789744
Q gi|254780667|r 18 VQRLVFAFYPSAVVWEF 34 (43)
Q Consensus 18 vqrlvfafypsavvwef 34 (43)
+-|+.+|+.|....|..
T Consensus 2 vvRa~yAlrPdgi~WP~ 18 (219)
T 2qxf_A 2 VMRACYALRPEGINWPE 18 (219)
T ss_dssp HHHHHHHHCCTTSCCCB
T ss_pred HHHHHHHHHCCCCCCCC
T ss_conf 66530011112213430
No 10
>>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein structure initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} (A:273-362)
Probab=3.84 E-value=3.1e+02 Score=12.24 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 78974432333102
Q gi|254780667|r 29 AVVWEFGRILTATC 42 (43)
Q Consensus 29 avvwefgriltatc 42 (43)
.--|++|+-||.||
T Consensus 48 ~~~~~~a~~Lt~tC 61 (90)
T 1nxc_A 48 QHYLELGAEIARTC 61 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 78999999999999
Done!