RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780667|ref|YP_003065080.1| hypothetical protein
CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>gnl|CDD|161830 TIGR00344, alaS, alanine--tRNA ligase.  The model describes
           alanine--tRNA ligase. This enzyme catalyzes the reaction
           (tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
           pyrophosphate + AMP).
          Length = 851

 Score = 24.7 bits (54), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 3   KGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ 43
            G L A+D +FR   VQ+      P+ VV+ FG +   + +
Sbjct: 505 TGYLIANDGKFRVVDVQK------PNGVVFHFGEVEGGSLK 539


>gnl|CDD|150068 pfam09272, Hepsin-SRCR, Hepsin, SRCR.  Members of this family form
           an extracellular domain of the serine protease hepsin.
           They are formed primarily by three elements of regular
           secondary structure: a 12-residue alpha helix, a twisted
           five-stranded antiparallel beta sheet, and a second,
           two-stranded, antiparallel sheet. The two beta-sheets
           lie at roughly right angles to each other, with the
           helix nestled between the two, adopting an SRCR fold.
           The exact function of this domain has not been
           identified, though it probably may serve to orient the
           protease domain or place it in the vicinity of its
           substrate.
          Length = 110

 Score = 24.1 bits (52), Expect = 7.1
 Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 12  EFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ 43
           E      QRL+            GR L A CQ
Sbjct: 73  EGELPYGQRLLTVISVCDC--PRGRFLEAICQ 102


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.336    0.142    0.458 

Gapped
Lambda     K      H
   0.267   0.0693    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 707,279
Number of extensions: 25278
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 43
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,627,137
Effective search space: 146305562
Effective search space used: 146305562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.1 bits)