RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780667|ref|YP_003065080.1| hypothetical protein
CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.7 bits (60), Expect = 0.70
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 28/48 (58%)

Query: 2  MKGL-----LHADDIEFRFTAVQRLVFAFYPS-AVVWEFGRILTATCQ 43
          +K L     L+ADD     +A         P+ A+         AT +
Sbjct: 22 LKKLQASLKLYADD-----SA---------PALAI--------KATME 47


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.336    0.142    0.458 

Gapped
Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 376,385
Number of extensions: 9741
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 43
Length of database: 5,693,230
Length adjustment: 16
Effective length of query: 27
Effective length of database: 5,305,326
Effective search space: 143243802
Effective search space used: 143243802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.8 bits)