Query gi|254780668|ref|YP_003065081.1| hypothetical protein CLIBASIA_02775 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 46 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 16:52:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780668.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1hcz_A Cytochrome F; electron 8.1 1E+02 0.0042 13.6 1.0 12 14-25 64-75 (252) 2 1e2w_A Cytochrome F; electron 7.9 1E+02 0.0044 13.5 1.0 12 14-25 64-75 (251) 3 1vf5_C Cytochrome F; photosynt 6.7 99 0.0041 13.6 0.4 12 14-25 65-76 (289) 4 1q90_A Apocytochrome F; membra 5.8 1.6E+02 0.0065 12.7 1.0 11 15-25 65-75 (292) 5 3kog_A Putative pore-forming t 5.2 1.9E+02 0.008 12.3 2.4 38 2-39 26-80 (256) 6 1ci3_M Protein (cytochrome F); 3.9 2.4E+02 0.01 11.8 1.0 13 14-26 64-76 (249) 7 3oae_A Late major capsid prote 2.4 2.6E+02 0.011 11.6 -0.2 7 9-15 404-410 (428) 8 1rlz_A DHS, deoxyhypusine synt 2.3 1.4E+02 0.0059 12.9 -1.8 28 7-34 318-345 (369) 9 1wrg_A LH-1, light-harvesting 2.2 2.1E+02 0.0088 12.1 -1.0 6 41-46 15-20 (55) 10 2r5i_A L1 protein; HPV18, pent 2.1 2.9E+02 0.012 11.4 -0.4 7 9-15 404-410 (428) No 1 >1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B* Probab=8.14 E-value=1e+02 Score=13.59 Aligned_cols=12 Identities=58% Similarity=0.548 Sum_probs=7.8 Q ss_pred HCCCCEEEEEEE Q ss_conf 304730377898 Q gi|254780668|r 14 FSKGKLNVAAVK 25 (46) Q Consensus 14 fskgklnvaavk 25 (46) =|||.|||.||- T Consensus 64 G~kg~LnVGAVl 75 (252) T 1hcz_A 64 GKKGALNVGAVL 75 (252) T ss_dssp SSEECCEEEEEE T ss_pred CCCCCCCCCEEE T ss_conf 851565522599 No 2 >1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A* Probab=7.92 E-value=1e+02 Score=13.51 Aligned_cols=12 Identities=50% Similarity=0.487 Sum_probs=8.0 Q ss_pred HCCCCEEEEEEE Q ss_conf 304730377898 Q gi|254780668|r 14 FSKGKLNVAAVK 25 (46) Q Consensus 14 fskgklnvaavk 25 (46) =|||.|||.||- T Consensus 64 G~kg~LnVGAVl 75 (251) T 1e2w_A 64 GKKGDLNVGMVL 75 (251) T ss_dssp SSEECCEEEEEE T ss_pred CCCCCCCCEEEE T ss_conf 852554400599 No 3 >1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C* Probab=6.70 E-value=99 Score=13.62 Aligned_cols=12 Identities=58% Similarity=0.313 Sum_probs=8.4 Q ss_pred HCCCCEEEEEEE Q ss_conf 304730377898 Q gi|254780668|r 14 FSKGKLNVAAVK 25 (46) Q Consensus 14 fskgklnvaavk 25 (46) =|||.|||.||- T Consensus 65 G~kg~LNVGAVl 76 (289) T 1vf5_C 65 GSKVGLNVGAVL 76 (289) T ss_dssp SCEECCCEECEE T ss_pred CCCCCCCCEEEE T ss_conf 842565410499 No 4 >1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 Probab=5.80 E-value=1.6e+02 Score=12.70 Aligned_cols=11 Identities=55% Similarity=0.688 Sum_probs=7.9 Q ss_pred CCCCEEEEEEE Q ss_conf 04730377898 Q gi|254780668|r 15 SKGKLNVAAVK 25 (46) Q Consensus 15 skgklnvaavk 25 (46) |||.|||.||- T Consensus 65 ~kg~lnvGavl 75 (292) T 1q90_A 65 KKGDLNVGMVL 75 (292) T ss_dssp SEECCEEEEEE T ss_pred CCCCCCEEEEE T ss_conf 43563130089 No 5 >3kog_A Putative pore-forming toxin; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.85A {Bacteroides vulgatus atcc 8482} Probab=5.25 E-value=1.9e+02 Score=12.28 Aligned_cols=38 Identities=34% Similarity=0.525 Sum_probs=24.7 Q ss_pred CCCCCCHHHHH----HHCCCC-------------EEEEEEEEEEEEEEEEEEEEE Q ss_conf 42122201455----530473-------------037789876422367753333 Q gi|254780668|r 2 YNLATGADLTE----KFSKGK-------------LNVAAVKCELKAEVTVTRAAI 39 (46) Q Consensus 2 ynlatgadlte----kfskgk-------------lnvaavkcelkaevtvtraai 39 (46) |.+.+|.|++. -+|+++ .+++|-+--|..+++|+-.|+ T Consensus 26 ~d~~~Gs~vt~~~~iTis~~~~t~tg~p~lAat~~~i~Akye~lsgsvtv~VPAL 80 (256) T 3kog_A 26 IDATTGTDVTQSAEISFSKGNGTYEGTPELASESININAKYKGMTGSASVTIPAL 80 (256) T ss_dssp EETTTTEECGGGSEEEESSSSSEEECSSSBCCEEEEEEEEETTEEEEEEEEECCB T ss_pred EECCCCCEECCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEHH T ss_conf 9857884121420699867775003885123467785542046541589995322 No 6 >1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transport; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B* Probab=3.95 E-value=2.4e+02 Score=11.78 Aligned_cols=13 Identities=62% Similarity=0.531 Sum_probs=8.4 Q ss_pred HCCCCEEEEEEEE Q ss_conf 3047303778987 Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46) Q Consensus 14 fskgklnvaavkc 26 (46) =|||.|||.||-- T Consensus 64 g~k~~lnVgavli 76 (249) T 1ci3_M 64 GSKGPLNVGAVLM 76 (249) T ss_dssp SSEECCEEEEEEE T ss_pred CCCCCCCEEEEEE T ss_conf 7315652357998 No 7 >3oae_A Late major capsid protein L1; jelly roll, receptor HSPG, virus capsid, VIR protein; HET: JHM IDU; 2.80A {Human papillomavirus} PDB: 2r5h_A 2r5j_A 2r5k_A Probab=2.45 E-value=2.6e+02 Score=11.63 Aligned_cols=7 Identities=71% Similarity=1.061 Sum_probs=0.0 Q ss_pred HHHHHHC Q ss_conf 1455530 Q gi|254780668|r 9 DLTEKFS 15 (46) Q Consensus 9 dltekfs 15 (46) ||+|||| T Consensus 404 DLtEr~S 410 (428) T 3oae_A 404 NLKEKFS 410 (428) T ss_dssp ECTTTCB T ss_pred CCCHHCC T ss_conf 4721025 No 8 >1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermidine, transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A* Probab=2.33 E-value=1.4e+02 Score=12.90 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=0.0 Q ss_pred CHHHHHHHCCCCEEEEEEEEEEEEEEEE Q ss_conf 2014555304730377898764223677 Q gi|254780668|r 7 GADLTEKFSKGKLNVAAVKCELKAEVTV 34 (46) Q Consensus 7 gadltekfskgklnvaavkcelkaevtv 34 (46) ||-+.|+-|-||+...+-+-...++.|+ T Consensus 318 GA~p~EaiSWGKi~~~a~~v~V~~DATI 345 (369) T 1rlz_A 318 GARPDEAVSWGKIRVDAQPVKVYADASL 345 (369) T ss_dssp TCCHHHHHHHTSBCTTCCCEEEESCHHH T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEHHH T ss_conf 8983400104771789884899961789 No 9 >1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum} Probab=2.21 E-value=2.1e+02 Score=12.10 Aligned_cols=6 Identities=83% Similarity=1.154 Sum_probs=0.0 Q ss_pred EHHCCC Q ss_conf 111049 Q gi|254780668|r 41 EAKELH 46 (46) Q Consensus 41 eakelh 46 (46) ||+|+| T Consensus 15 EA~EfH 20 (55) T 1wrg_A 15 EAKEFH 20 (55) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 10 >2r5i_A L1 protein; HPV18, pentamer, structure, type specific epitope, capsid, capsid protein, virion; 3.40A {Human papillomavirus type 18} Probab=2.13 E-value=2.9e+02 Score=11.44 Aligned_cols=7 Identities=86% Similarity=1.179 Sum_probs=0.0 Q ss_pred HHHHHHC Q ss_conf 1455530 Q gi|254780668|r 9 DLTEKFS 15 (46) Q Consensus 9 dltekfs 15 (46) ||+|||| T Consensus 404 DL~er~S 410 (428) T 2r5i_A 404 DLKEKFS 410 (428) T ss_dssp ECTTCCB T ss_pred CCCHHCC T ss_conf 5732124 Done!