Query gi|254780668|ref|YP_003065081.1| hypothetical protein CLIBASIA_02775 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 46 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 07:53:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780668.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1e2wa1 b.2.6.1 (A:1-168,A:233 10.0 44 0.0032 14.2 1.0 13 14-26 64-76 (187) 2 d1ci3m1 b.2.6.1 (M:1-169,M:232 9.8 45 0.0033 14.1 1.0 13 14-26 64-76 (187) 3 d1wgwa_ a.24.13.1 (A:) Signal 7.5 49 0.0036 13.9 0.4 13 4-16 4-16 (99) 4 d3cx5b2 d.185.1.1 (B:219-368) 4.8 1.2E+02 0.0085 12.2 1.0 14 12-25 126-139 (150) 5 d2v4jb2 d.58.36.2 (B:2-135) Di 2.3 2.2E+02 0.016 10.9 1.2 15 7-21 80-94 (134) 6 d1dhsa_ c.31.1.1 (A:) Deoxyhyp 2.2 80 0.0058 12.9 -1.9 29 5-33 308-336 (361) 7 d3c7bb2 d.58.36.2 (B:4-122) Di 2.1 2.3E+02 0.017 10.8 1.2 16 7-22 67-82 (119) 8 d4fiva_ b.50.1.1 (A:) Feline i 2.1 1.9E+02 0.014 11.2 -0.2 8 4-11 26-33 (113) 9 d2fmba_ b.50.1.1 (A:) EIAV pro 2.1 1.9E+02 0.014 11.1 -0.2 8 4-11 24-31 (104) 10 d1lc0a2 d.81.1.4 (A:129-246) B 2.0 2.4E+02 0.018 10.7 1.6 14 31-44 53-66 (118) No 1 >d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=10.03 E-value=44 Score=14.16 Aligned_cols=13 Identities=46% Similarity=0.422 Sum_probs=9.7 Q ss_pred HCCCCEEEEEEEE Q ss_conf 3047303778987 Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46) Q Consensus 14 fskgklnvaavkc 26 (46) =|||.|||.||-- T Consensus 64 G~kg~LnVGAVli 76 (187) T d1e2wa1 64 GKKGDLNVGMVLI 76 (187) T ss_dssp SSEECCEEEEEEE T ss_pred CCCCCCCEEEEEE T ss_conf 8515741236997 No 2 >d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain {Phormidium laminosum [TaxId: 32059]} Probab=9.77 E-value=45 Score=14.09 Aligned_cols=13 Identities=62% Similarity=0.531 Sum_probs=9.7 Q ss_pred HCCCCEEEEEEEE Q ss_conf 3047303778987 Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46) Q Consensus 14 fskgklnvaavkc 26 (46) =|||.|||.||-- T Consensus 64 G~kg~LnVGAVli 76 (187) T d1ci3m1 64 GSKGPLNVGAVLM 76 (187) T ss_dssp SSEECCEEEEEEE T ss_pred CCCCCCCEEEEEE T ss_conf 8525741236997 No 3 >d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]} Probab=7.55 E-value=49 Score=13.91 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=9.9 Q ss_pred CCCCHHHHHHHCC Q ss_conf 1222014555304 Q gi|254780668|r 4 LATGADLTEKFSK 16 (46) Q Consensus 4 latgadltekfsk 16 (46) -++||||+++|+. T Consensus 4 ~~~~a~L~~~i~~ 16 (99) T d1wgwa_ 4 GSSGADLGRKITS 16 (99) T ss_dssp SSSCSHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 6106269899999 No 4 >d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.81 E-value=1.2e+02 Score=12.17 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=10.6 Q ss_pred HHHCCCCEEEEEEE Q ss_conf 55304730377898 Q gi|254780668|r 12 EKFSKGKLNVAAVK 25 (46) Q Consensus 12 ekfskgklnvaavk 25 (46) .+|.+||.++++|- T Consensus 126 k~~~~~K~s~~avG 139 (150) T d3cx5b2 126 KDFKLGKFNYVAVG 139 (150) T ss_dssp CEECCCSCEEEEEE T ss_pred HHHHCCCCEEEEEC T ss_conf 99745897699973 No 5 >d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Probab=2.33 E-value=2.2e+02 Score=10.89 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=10.5 Q ss_pred CHHHHHHHCCCCEEE Q ss_conf 201455530473037 Q gi|254780668|r 7 GADLTEKFSKGKLNV 21 (46) Q Consensus 7 gadltekfskgklnv 21 (46) =||+.+||+.|.+.. T Consensus 80 iadIAdkYg~G~lrf 94 (134) T d2v4jb2 80 MCDIADKYCGGHLRF 94 (134) T ss_dssp HHHHHHHHSTTEEEE T ss_pred HHHHHHHHCCCCEEE T ss_conf 999999978782215 No 6 >d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} Probab=2.21 E-value=80 Score=12.93 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=18.9 Q ss_pred CCCHHHHHHHCCCCEEEEEEEEEEEEEEE Q ss_conf 22201455530473037789876422367 Q gi|254780668|r 5 ATGADLTEKFSKGKLNVAAVKCELKAEVT 33 (46) Q Consensus 5 atgadltekfskgklnvaavkcelkaevt 33 (46) -.||-+.|+-|-||+...+-.-...++.| T Consensus 308 lSGA~p~EaiSWGKi~~~a~~v~V~~DAT 336 (361) T d1dhsa_ 308 DSGARPDEAVSWGKIRVDAQPVKVYADAS 336 (361) T ss_dssp STTCCHHHHHHHTSBCTTCCCEEECSCHH T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEHH T ss_conf 66898330130576178988379996077 No 7 >d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Probab=2.15 E-value=2.3e+02 Score=10.75 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=11.2 Q ss_pred CHHHHHHHCCCCEEEE Q ss_conf 2014555304730377 Q gi|254780668|r 7 GADLTEKFSKGKLNVA 22 (46) Q Consensus 7 gadltekfskgklnva 22 (46) =+|+.+||..|-++.. T Consensus 67 iadIAdKY~~G~lrfT 82 (119) T d3c7bb2 67 LCDIADKYSDGYLRWT 82 (119) T ss_dssp HHHHHHHHSTTEEEEC T ss_pred HHHHHHHHCCCEEEEE T ss_conf 9999999686607761 No 8 >d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Probab=2.13 E-value=1.9e+02 Score=11.22 Aligned_cols=8 Identities=75% Similarity=1.049 Sum_probs=0.0 Q ss_pred CCCCHHHH Q ss_conf 12220145 Q gi|254780668|r 4 LATGADLT 11 (46) Q Consensus 4 latgadlt 11 (46) |.||||-| T Consensus 26 LDTGAD~T 33 (113) T d4fiva_ 26 LDTGADIT 33 (113) T ss_dssp ECTTCSSC T ss_pred ECCCCCCE T ss_conf 72799847 No 9 >d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Probab=2.07 E-value=1.9e+02 Score=11.14 Aligned_cols=8 Identities=63% Similarity=0.837 Sum_probs=0.0 Q ss_pred CCCCHHHH Q ss_conf 12220145 Q gi|254780668|r 4 LATGADLT 11 (46) Q Consensus 4 latgadlt 11 (46) |-||||-| T Consensus 24 LDTGAD~T 31 (104) T d2fmba_ 24 LDTGADTS 31 (104) T ss_dssp ECTTCSSC T ss_pred EECCCCEE T ss_conf 81799808 No 10 >d1lc0a2 d.81.1.4 (A:129-246) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=2.04 E-value=2.4e+02 Score=10.66 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=0.0 Q ss_pred EEEEEEEEEEEHHC Q ss_conf 36775333311110 Q gi|254780668|r 31 EVTVTRAAIVEAKE 44 (46) Q Consensus 31 evtvtraaiveake 44 (46) |++|+.|...|.|| T Consensus 53 elsvtsatlee~kE 66 (118) T d1lc0a2 53 ELSLISATLEERKE 66 (118) T ss_dssp SCEEEEEEEEEEGG T ss_pred EEEEEECHHHHHHH T ss_conf 06876411555313 Done!