Query         gi|254780668|ref|YP_003065081.1| hypothetical protein CLIBASIA_02775 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 46
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 07:53:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780668.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1e2wa1 b.2.6.1 (A:1-168,A:233  10.0      44  0.0032   14.2   1.0   13   14-26     64-76  (187)
  2 d1ci3m1 b.2.6.1 (M:1-169,M:232   9.8      45  0.0033   14.1   1.0   13   14-26     64-76  (187)
  3 d1wgwa_ a.24.13.1 (A:) Signal    7.5      49  0.0036   13.9   0.4   13    4-16      4-16  (99)
  4 d3cx5b2 d.185.1.1 (B:219-368)    4.8 1.2E+02  0.0085   12.2   1.0   14   12-25    126-139 (150)
  5 d2v4jb2 d.58.36.2 (B:2-135) Di   2.3 2.2E+02   0.016   10.9   1.2   15    7-21     80-94  (134)
  6 d1dhsa_ c.31.1.1 (A:) Deoxyhyp   2.2      80  0.0058   12.9  -1.9   29    5-33    308-336 (361)
  7 d3c7bb2 d.58.36.2 (B:4-122) Di   2.1 2.3E+02   0.017   10.8   1.2   16    7-22     67-82  (119)
  8 d4fiva_ b.50.1.1 (A:) Feline i   2.1 1.9E+02   0.014   11.2  -0.2    8    4-11     26-33  (113)
  9 d2fmba_ b.50.1.1 (A:) EIAV pro   2.1 1.9E+02   0.014   11.1  -0.2    8    4-11     24-31  (104)
 10 d1lc0a2 d.81.1.4 (A:129-246) B   2.0 2.4E+02   0.018   10.7   1.6   14   31-44     53-66  (118)

No 1  
>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.03  E-value=44  Score=14.16  Aligned_cols=13  Identities=46%  Similarity=0.422  Sum_probs=9.7

Q ss_pred             HCCCCEEEEEEEE
Q ss_conf             3047303778987
Q gi|254780668|r   14 FSKGKLNVAAVKC   26 (46)
Q Consensus        14 fskgklnvaavkc   26 (46)
                      =|||.|||.||--
T Consensus        64 G~kg~LnVGAVli   76 (187)
T d1e2wa1          64 GKKGDLNVGMVLI   76 (187)
T ss_dssp             SSEECCEEEEEEE
T ss_pred             CCCCCCCEEEEEE
T ss_conf             8515741236997


No 2  
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain {Phormidium laminosum [TaxId: 32059]}
Probab=9.77  E-value=45  Score=14.09  Aligned_cols=13  Identities=62%  Similarity=0.531  Sum_probs=9.7

Q ss_pred             HCCCCEEEEEEEE
Q ss_conf             3047303778987
Q gi|254780668|r   14 FSKGKLNVAAVKC   26 (46)
Q Consensus        14 fskgklnvaavkc   26 (46)
                      =|||.|||.||--
T Consensus        64 G~kg~LnVGAVli   76 (187)
T d1ci3m1          64 GSKGPLNVGAVLM   76 (187)
T ss_dssp             SSEECCEEEEEEE
T ss_pred             CCCCCCCEEEEEE
T ss_conf             8525741236997


No 3  
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.55  E-value=49  Score=13.91  Aligned_cols=13  Identities=38%  Similarity=0.539  Sum_probs=9.9

Q ss_pred             CCCCHHHHHHHCC
Q ss_conf             1222014555304
Q gi|254780668|r    4 LATGADLTEKFSK   16 (46)
Q Consensus         4 latgadltekfsk   16 (46)
                      -++||||+++|+.
T Consensus         4 ~~~~a~L~~~i~~   16 (99)
T d1wgwa_           4 GSSGADLGRKITS   16 (99)
T ss_dssp             SSSCSHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
T ss_conf             6106269899999


No 4  
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.81  E-value=1.2e+02  Score=12.17  Aligned_cols=14  Identities=43%  Similarity=0.619  Sum_probs=10.6

Q ss_pred             HHHCCCCEEEEEEE
Q ss_conf             55304730377898
Q gi|254780668|r   12 EKFSKGKLNVAAVK   25 (46)
Q Consensus        12 ekfskgklnvaavk   25 (46)
                      .+|.+||.++++|-
T Consensus       126 k~~~~~K~s~~avG  139 (150)
T d3cx5b2         126 KDFKLGKFNYVAVG  139 (150)
T ss_dssp             CEECCCSCEEEEEE
T ss_pred             HHHHCCCCEEEEEC
T ss_conf             99745897699973


No 5  
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=2.33  E-value=2.2e+02  Score=10.89  Aligned_cols=15  Identities=27%  Similarity=0.594  Sum_probs=10.5

Q ss_pred             CHHHHHHHCCCCEEE
Q ss_conf             201455530473037
Q gi|254780668|r    7 GADLTEKFSKGKLNV   21 (46)
Q Consensus         7 gadltekfskgklnv   21 (46)
                      =||+.+||+.|.+..
T Consensus        80 iadIAdkYg~G~lrf   94 (134)
T d2v4jb2          80 MCDIADKYCGGHLRF   94 (134)
T ss_dssp             HHHHHHHHSTTEEEE
T ss_pred             HHHHHHHHCCCCEEE
T ss_conf             999999978782215


No 6  
>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.21  E-value=80  Score=12.93  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=18.9

Q ss_pred             CCCHHHHHHHCCCCEEEEEEEEEEEEEEE
Q ss_conf             22201455530473037789876422367
Q gi|254780668|r    5 ATGADLTEKFSKGKLNVAAVKCELKAEVT   33 (46)
Q Consensus         5 atgadltekfskgklnvaavkcelkaevt   33 (46)
                      -.||-+.|+-|-||+...+-.-...++.|
T Consensus       308 lSGA~p~EaiSWGKi~~~a~~v~V~~DAT  336 (361)
T d1dhsa_         308 DSGARPDEAVSWGKIRVDAQPVKVYADAS  336 (361)
T ss_dssp             STTCCHHHHHHHTSBCTTCCCEEECSCHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEHH
T ss_conf             66898330130576178988379996077


No 7  
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.15  E-value=2.3e+02  Score=10.75  Aligned_cols=16  Identities=31%  Similarity=0.515  Sum_probs=11.2

Q ss_pred             CHHHHHHHCCCCEEEE
Q ss_conf             2014555304730377
Q gi|254780668|r    7 GADLTEKFSKGKLNVA   22 (46)
Q Consensus         7 gadltekfskgklnva   22 (46)
                      =+|+.+||..|-++..
T Consensus        67 iadIAdKY~~G~lrfT   82 (119)
T d3c7bb2          67 LCDIADKYSDGYLRWT   82 (119)
T ss_dssp             HHHHHHHHSTTEEEEC
T ss_pred             HHHHHHHHCCCEEEEE
T ss_conf             9999999686607761


No 8  
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}
Probab=2.13  E-value=1.9e+02  Score=11.22  Aligned_cols=8  Identities=75%  Similarity=1.049  Sum_probs=0.0

Q ss_pred             CCCCHHHH
Q ss_conf             12220145
Q gi|254780668|r    4 LATGADLT   11 (46)
Q Consensus         4 latgadlt   11 (46)
                      |.||||-|
T Consensus        26 LDTGAD~T   33 (113)
T d4fiva_          26 LDTGADIT   33 (113)
T ss_dssp             ECTTCSSC
T ss_pred             ECCCCCCE
T ss_conf             72799847


No 9  
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}
Probab=2.07  E-value=1.9e+02  Score=11.14  Aligned_cols=8  Identities=63%  Similarity=0.837  Sum_probs=0.0

Q ss_pred             CCCCHHHH
Q ss_conf             12220145
Q gi|254780668|r    4 LATGADLT   11 (46)
Q Consensus         4 latgadlt   11 (46)
                      |-||||-|
T Consensus        24 LDTGAD~T   31 (104)
T d2fmba_          24 LDTGADTS   31 (104)
T ss_dssp             ECTTCSSC
T ss_pred             EECCCCEE
T ss_conf             81799808


No 10 
>d1lc0a2 d.81.1.4 (A:129-246) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.04  E-value=2.4e+02  Score=10.66  Aligned_cols=14  Identities=36%  Similarity=0.515  Sum_probs=0.0

Q ss_pred             EEEEEEEEEEEHHC
Q ss_conf             36775333311110
Q gi|254780668|r   31 EVTVTRAAIVEAKE   44 (46)
Q Consensus        31 evtvtraaiveake   44 (46)
                      |++|+.|...|.||
T Consensus        53 elsvtsatlee~kE   66 (118)
T d1lc0a2          53 ELSLISATLEERKE   66 (118)
T ss_dssp             SCEEEEEEEEEEGG
T ss_pred             EEEEEECHHHHHHH
T ss_conf             06876411555313


Done!