HHsearch alignment for GI: 254780669 and conserved domain: PRK09331
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=93.89 E-value=0.24 Score=29.76 Aligned_cols=181 Identities=15% Similarity=0.200 Sum_probs=109.1
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHH
Q ss_conf 95486349999999999999996553399706601557688666322245671248889998866528768852288999
Q gi|254780669|r 48 IAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQ 127 (301)
Q Consensus 48 IAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~ 127 (301)
T Consensus 27 ~gg~lt~ea~ka-------~~~~gdgysvcd~C~~~L--------D~i~~Ppi~~---f~~~la~flg~D~~rlvnGar~ 88 (386)
T PRK09331 27 RGGRLTPEARKA-------LIEYGDGYSVCDYCKGRL--------DKIEKPPIAD---FHEDLAKFLGMDEARVTPGARE 88 (386)
T ss_pred HCCCCCHHHHHH-------HHHHCCCCCHHHHHCCHH--------HCCCCCCHHH---HHHHHHHHHCCCEEEECCCCCH
T ss_conf 269689999999-------999748873664541101--------1255998899---9999999849963785288427
Q ss_pred HHH-----HHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEEC----CCCCCHHHHHHHHHHHHHC-C-CCCEE-EEECC
Q ss_conf 987-----65021578822576289999999850597799836----7778999999999999725-8-78089-95146
Q gi|254780669|r 128 CEA-----IADSVDILQIPALLCRQTDLLTAAAQTGRVINVKK----GQFLSPWEMHNILQKLHAH-G-AKDVL-FCERG 195 (301)
Q Consensus 128 ~e~-----~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKk----gq~~s~~e~~~a~eki~~~-G-n~~i~-lcERG 195 (301)
T Consensus 89 g~qAv~~a~c~~GD~VIl~-rnaHyS~~~A~elaG~~~~~v~~~~~~~~~I~~~~~~~~Iee~~~e~gk~~aL~llt~pd 167 (386)
T PRK09331 89 GKFAVMHALCKKGDYVVLD-GLAHYTSYVAAERAGLNVREVPKTGYPDYRITPEAYAEKIEEVEDETGKPPALALLTHVD 167 (386)
T ss_pred HHHHHHHHHHCCCCEEEEC-CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8999999863699979844-840599999999759858993687772345080057999999998618985599996888
Q ss_pred CCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 544401000000010688-851871687117774212234532126388999999999971898899983698
Q gi|254780669|r 196 TSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQD 267 (301)
Q Consensus 196 ~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~ 267 (301)
T Consensus 168 --y~yGn~-~d~~~i~~iah~~~ip~lvdeA~~~-----------~~------~P~~a~~~GaD~~v~S~HK~ 220 (386)
T PRK09331 168 --GNYGNL-HDAKKIAKVAHQYGIPLLLNGAYTV-----------GR------MPVDGKELGADFIVGSGHKS 220 (386)
T ss_pred --CCCCCH-HHHHHHHHHHHHCCCCEEEECCCCC-----------CC------CCCCHHHCCCCEEEEECCCC
T ss_conf --664454-6389999999874981898144335-----------77------89746663998898634544