HHsearch alignment for GI: 254780669 and conserved domain: PRK10550
>PRK10550 tRNA-dihydrouridine synthase C; Provisional.
Probab=93.18 E-value=0.69 Score=26.71 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=49.9
Q ss_pred ECHHHCCCHHHHHH----HHH---CCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCH
Q ss_conf 22576289999999----850---59779983677-78999999999999725878089951465444010000000106
Q gi|254780669|r 140 IPALLCRQTDLLTA----AAQ---TGRVINVKKGQ-FLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIP 211 (301)
Q Consensus 140 IgA~~~rqtdLl~a----~a~---t~kpV~iKkgq-~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~ 211 (301)
T Consensus 108 ~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~RlG~~~~~~~~e~~~~~~~~G~~~ltvH~RT~~q~y~~~~~dw~~i~ 187 (312)
T PRK10550 108 GGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGDRKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIG 187 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCHHHHH
T ss_conf 26853289779999999999745878995477535899863199999999973998799905526535899834899999
Q ss_pred HHHH-HCCCEEE
Q ss_conf 8885-1871687
Q gi|254780669|r 212 IMTS-MGVPVIF 222 (301)
Q Consensus 212 ~lk~-~~~PVi~ 222 (301)
T Consensus 188 ~~~~~~~iPvi~ 199 (312)
T PRK10550 188 EIRQRLTIPVIA 199 (312)
T ss_pred HHHHHCCCCEEE
T ss_conf 999748998997