HHsearch alignment for GI: 254780669 and conserved domain: TIGR03569
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=99.27 E-value=5.9e-09 Score=79.80 Aligned_cols=227 Identities=17% Similarity=0.260 Sum_probs=159.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEC-----------CCCCCC----CCCCCCCCC--CCCHHHHHHHHHHH
Q ss_conf 48634999999999999999655339-9706601-----------557688----666322245--67124888999886
Q gi|254780669|r 50 GPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKS-----------SFDKAN----RSSLAGKRG--VGLKKGREIFRDLK 111 (301)
Q Consensus 50 GPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~-----------sfdKan----RtS~~sfrG--~Gle~gL~il~e~k 111 (301)
T Consensus 8 g~NH~Gdl~~Ak~LI~~A~~sGadaVKFQ-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~kk~els~~-~~~~L~~~~ 85 (329)
T TIGR03569 8 GVNHNGSLELAKKLVDAAAEAGADAVKFQ-TFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEE-DHRELKEYC 85 (329)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCHH-HHHHHHHHH
T ss_conf 78767809999999999999496999930-7871132781103033012689888619999987148999-999999999
Q ss_pred HHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CC
Q ss_conf 65287688522889999876502-1578822576289999999850597799836777899999999999972587--80
Q gi|254780669|r 112 KKYGFPILTDVHTEQQCEAIADS-VDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA--KD 188 (301)
Q Consensus 112 ~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn--~~ 188 (301)
T Consensus 86 ~~~gi~~~~s~fd~~s~~~l~~~~~~~~KIaS~d~~n~~Li~~i~~~~kpiiiStG~s-~~~EI~~av~~~~~~~~~~~~ 164 (329)
T TIGR03569 86 ESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMA-TLEEIEAAVGVLRDAGTPDSN 164 (329)
T ss_pred HHHCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCC-HHHHHHHHHHHHHHCCCCCCC
T ss_conf 9729929989698999999986499979979231054899999997489789967862-399999999999974886557
Q ss_pred EEEEECCCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 899514654440100000001068885-1871687117774212234532126388999999999971898899983698
Q gi|254780669|r 189 VLFCERGTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQD 267 (301)
Q Consensus 189 i~lcERG~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~ 267 (301)
T Consensus 165 i~llhC~s~YP~~~~~~nL~~i~~lk~~f~~~iG~-SDHt~-----------g-----~~~~~~Ava~GA~--vIEKHfT 225 (329)
T TIGR03569 165 ITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGY-SDHTL-----------G-----IEAPIAAVALGAT--VIEKHFT 225 (329)
T ss_pred EEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCEEE-CCCCC-----------C-----CHHHHHHHHCCCE--EEEEEEE
T ss_conf 68864378899993764789999999985998684-79789-----------8-----3679999986996--9998777
Q ss_pred HHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 334797--8201868899999999999999988
Q gi|254780669|r 268 PDNAPS--DGPNMINIKDLPKLLSQLLAIDKII 298 (301)
Q Consensus 268 P~~Als--D~~q~l~l~~l~~ll~~l~~i~~~v 298 (301)
T Consensus 226 ldk~~~g~D~~~Sl~p~e~k~lv~~i~~~~~~l 258 (329)
T TIGR03569 226 LDKNLPGPDHKASLEPDELKEMVQGIRNVEKAL 258 (329)
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 689999996787099999999999999999981