HHsearch alignment for GI: 254780669 and conserved domain: TIGR03586
>TIGR03586 PseI pseudaminic acid synthase.
Probab=99.37 E-value=2.2e-10 Score=89.17 Aligned_cols=231 Identities=19% Similarity=0.241 Sum_probs=160.7
Q ss_pred EEEEE--CCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEC----------CCCC-----CCCCCCCCCCCCCCHHHHHH
Q ss_conf 69995--48634999999999999999655339-9706601----------5576-----88666322245671248889
Q gi|254780669|r 45 FVLIA--GPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKS----------SFDK-----ANRSSLAGKRGVGLKKGREI 106 (301)
Q Consensus 45 l~iIA--GPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~----------sfdK-----anRtS~~sfrG~Gle~gL~i 106 (301)
T Consensus 2 p~IIAEIG~NHnGdl~~Ak~LI~~A~~sGaDaVKFQ-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~e~ 78 (327)
T TIGR03586 2 PFIIAELSANHNGSLERALAMIEAAAAAGADAIKLQ-TYTADTITLDSDRPDFIIKGGLWDGRTLYELYQEA--HTPWEW 78 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEC-CCCHHHEECCCCCHHHHCCCCCCCCEEHHHHHHHH--HCCHHH
T ss_conf 999998157867829999999999999299999933-60666603566546541147877880899999986--478999
Q ss_pred ---HHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf ---9988665287688522889999876502-157882257628999999985059779983677789999999999997
Q gi|254780669|r 107 ---FRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLH 182 (301)
Q Consensus 107 ---l~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~ 182 (301)
T Consensus 79 ~~~L~~~~k~~gI~f~~t~fd~~s~~~l~~l~~~~~KIaS~d~~n~~Li~~iak~~kpviiStG~-s~~~EI~~av~~~~ 157 (327)
T TIGR03586 79 HKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI-ATLEEIEEAVEAAR 157 (327)
T ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHCCCCCEEEECCC-CCHHHHHHHHHHHH
T ss_conf 99999999985997997889979999998707995998941536656999986648867996888-75456788888776
Q ss_pred HCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 258780899514654440100000001068885-1871687117774212234532126388999999999971898899
Q gi|254780669|r 183 AHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIF 261 (301)
Q Consensus 183 ~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlf 261 (301)
T Consensus 158 ~~~~~~i~llhC~s~YPt~~~~~nL~~I~~lk~~f~~~vG~-SDHt-----------~g~-----~~~~~Ava~GA~--i 218 (327)
T TIGR03586 158 EAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGL-SDHT-----------LGI-----LAPVAAVALGAC--V 218 (327)
T ss_pred HHCCCCEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCEEE-CCCC-----------CCC-----HHHHHHHHCCCE--E
T ss_conf 50255715652585899893774367899999974997583-8989-----------982-----679999986994--9
Q ss_pred EEECCCHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 983698334797--8201868899999999999999988
Q gi|254780669|r 262 LETHQDPDNAPS--DGPNMINIKDLPKLLSQLLAIDKII 298 (301)
Q Consensus 262 iE~Hp~P~~Als--D~~q~l~l~~l~~ll~~l~~i~~~v 298 (301)
T Consensus 219 IEKHfTld~~~~g~Dh~~Sl~p~e~~~~v~~ir~~~~~l 257 (327)
T TIGR03586 219 IEKHFTLDRSDGGVDSAFSLEPDEFKALVKETRNAWLAL 257 (327)
T ss_pred EEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 998777689999986676099999999999999999981