HHsearch alignment for GI: 254780669 and conserved domain: cd02911

>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=91.75  E-value=1.2  Score=25.04  Aligned_cols=110  Identities=16%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             HHHHHCCEEEE--------------CHHHCCCHH----HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             76502157882--------------257628999----999985059779983677789999999999997258780899
Q gi|254780669|r  130 AIADSVDILQI--------------PALLCRQTD----LLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF  191 (301)
Q Consensus       130 ~~~~~vDilQI--------------gA~~~rqtd----Ll~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l  191 (301)
T Consensus        93 ~~~~~~d~IDiN~GCP~~kV~~~g~GsaLl~dp~~~~~iv~avk~~~~PVtvKiR~G~d~~~-~~~a~~~e~aG~~~--l  169 (233)
T cd02911          93 LVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDD-EELARLIEKAGADI--I  169 (233)
T ss_pred             HHHCCCCEEEEECCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HHHHHHHHHHCCCE--E
T ss_conf             97436999999799992898379753777389899999999998538984279856999888-99999999839607--9


Q ss_pred             EECCCCCCCHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             514654440100000001068885187168711777421223453212638899999999997189889998
Q gi|254780669|r  192 CERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE  263 (301)
Q Consensus       192 cERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE  263 (301)
T Consensus       170 ~v~~~--~~~~-~ad~~~I~~~~-~~i~Vig-----------NGDI~--s~ed----a~~~~~~G~DgVMIg  220 (233)
T cd02911         170 HVDAM--DPGN-HADLKKIRDIS-TELFIIG-----------NNSVT--TIES----AKEMFSYGADMVSVA  220 (233)
T ss_pred             EEECC--CCCC-HHHHHHHHHHC-CCCEEEE-----------ECCCC--CHHH----HHHHHHHCCCEEEEC
T ss_conf             94320--7785-08999999863-7987998-----------08969--9999----999998599999973