HHsearch alignment for GI: 254780669 and conserved domain: cd04740
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.68 E-value=0.22 Score=29.98 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=86.3
Q ss_pred EEECCCCCEEEEECCCCCCCHHHHHHHHHH------HHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCCCCHHHHHHHH
Q ss_conf 797699706999548634999999999999------99965533997066015576886663--2224567124888999
Q gi|254780669|r 37 VTFSNEQRFVLIAGPCQIESHDHAFMIAEK------LYAICQSLNIGLVYKSSFDKANRSSL--AGKRGVGLKKGREIFR 108 (301)
Q Consensus 37 i~ig~~~~l~iIAGPCsiES~e~~~~~A~~------lk~~~~~~~~~~ifK~sfdKanRtS~--~sfrG~Gle~gL~il~ 108 (301)
T Consensus 7 l~~~--nPi~lAAG~~~-~~~~~~~~~~~~g~G~v~~~Tvt~~-p~~Gn~~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~ 82 (296)
T cd04740 7 LRLK--NPVILASGTFG-FGEELSRVADLGKLGAIVTKSITLE-PREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELL 82 (296)
T ss_pred EECC--CCCEECCCCCC-CCHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCEEECCHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 8579--98787867899-8399999988589638993804703-145899981781541167652378886489998789
Q ss_pred HHHHHHCCEEEEECCC--HH----HHHHHHHH-CCEEEE----------CHHHCCCHHH----HHHHHH-CCCEEEEECC
Q ss_conf 8866528768852288--99----99876502-157882----------2576289999----999850-5977998367
Q gi|254780669|r 109 DLKKKYGFPILTDVHT--EQ----QCEAIADS-VDILQI----------PALLCRQTDL----LTAAAQ-TGRVINVKKG 166 (301)
Q Consensus 109 e~k~~~glpv~TeV~~--~~----~~e~~~~~-vDilQI----------gA~~~rqtdL----l~a~a~-t~kpV~iKkg 166 (301)
T Consensus 83 ~~~~~~~~pvi~si~~~~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~~~~~Pi~vKls 162 (296)
T cd04740 83 PWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT 162 (296)
T ss_pred HHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 86356897189981689878999999998864898899978899867636775749999999999998604896699718
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 7789999999999997258780899514
Q gi|254780669|r 167 QFLSPWEMHNILQKLHAHGAKDVLFCER 194 (301)
Q Consensus 167 q~~s~~e~~~a~eki~~~Gn~~i~lcER 194 (301)
T Consensus 163 P~~--~~i~~ia~~~~~~g~dgiv~~NT 188 (296)
T cd04740 163 PNV--TDIVEIARAAEEAGADGLTLINT 188 (296)
T ss_pred CCC--CHHHHHHHHHHHCCCCEEEEECC
T ss_conf 980--00999999999769988999746