HHsearch alignment for GI: 254780669 and conserved domain: pfam01207
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=95.51 E-value=0.22 Score=30.06 Aligned_cols=80 Identities=24% Similarity=0.291 Sum_probs=31.2
Q ss_pred CHHHCCCHHHHHHHHH-----CCCEEEEEC--CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH
Q ss_conf 2576289999999850-----597799836--777899999999999972587808995146544401000000010688
Q gi|254780669|r 141 PALLCRQTDLLTAAAQ-----TGRVINVKK--GQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM 213 (301)
Q Consensus 141 gA~~~rqtdLl~a~a~-----t~kpV~iKk--gq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l 213 (301)
T Consensus 100 GsaLl~~p~~~~~iv~a~~~~~~~PVtvK~RlG~d~~~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~g-~a~w~~i~~~ 178 (309)
T pfam01207 100 GAALLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTRAQNYEG-PADWDAIKQV 178 (309)
T ss_pred CEEHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCC-CCCHHHHHHH
T ss_conf 762541778999999999975588546754337887638899999999846888799967632402678-6541899999
Q ss_pred HH-HCCCEE
Q ss_conf 85-187168
Q gi|254780669|r 214 TS-MGVPVI 221 (301)
Q Consensus 214 k~-~~~PVi 221 (301)
T Consensus 179 k~~~~ipvi 187 (309)
T pfam01207 179 KQAVSIPVI 187 (309)
T ss_pred HHHCCCCEE
T ss_conf 985898289