BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter asiaticus str. psy62] (301 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter asiaticus str. psy62] Length = 301 Score = 624 bits (1610), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/301 (100%), Positives = 301/301 (100%) Query: 1 MHILYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHA 60 MHILYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHA Sbjct: 1 MHILYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHA 60 Query: 61 FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT 120 FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT Sbjct: 61 FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT 120 Query: 121 DVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK 180 DVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK Sbjct: 121 DVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK 180 Query: 181 LHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGG 240 LHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGG Sbjct: 181 LHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGG 240 Query: 241 ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKP 300 ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKP Sbjct: 241 ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKP 300 Query: 301 L 301 L Sbjct: 301 L 301 >gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62] Length = 175 Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 12/22 (54%) Query: 114 YGFPILTDVHTEQQCEAIADSV 135 YG P L D +Q C + DSV Sbjct: 35 YGDPTLVDREIQQYCTNVIDSV 56 >gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 594 Score = 23.9 bits (50), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 7/31 (22%) Query: 275 GPNMINIKDLPKLLS-----QLLA--IDKII 298 GPN I I+++P +LS QLL ID+II Sbjct: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEII 521 >gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 22.7 bits (47), Expect = 7.2, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 55 ESHDHAFMIAEKLYAICQSLNIGLV 79 ESH+ F+ ++ YA+ + LNI +V Sbjct: 94 ESHNIFFIGPQRDYALLEKLNIKIV 118 >gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 22.7 bits (47), Expect = 7.9, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 23/109 (21%) Query: 3 ILYPQNLEEK----QRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQ------RFVLIAGPC 52 I++ + EE Q++ID +IH N HL KNQ+ +++ R+ + + P Sbjct: 166 IVFSSDREEYIGLHQKQID---LIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPL 222 Query: 53 QI--ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVG 99 + S D A +Y + + ++ G + RS +A + +G Sbjct: 223 DLPEMSQDEAIKYINHVYLLGKWISRG--------EIQRSQIARREYIG 263 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.137 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 193,844 Number of Sequences: 1233 Number of extensions: 7959 Number of successful extensions: 21 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 5 length of query: 301 length of database: 328,796 effective HSP length: 73 effective length of query: 228 effective length of database: 238,787 effective search space: 54443436 effective search space used: 54443436 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)