HHsearch alignment for GI: 254780670 and conserved domain: cd03317

>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.59  E-value=7.7e-13  Score=115.45  Aligned_cols=287  Identities=20%  Similarity=0.293  Sum_probs=194.5

Q ss_pred             EEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             86886079784299999984897676634478664775467626898651680489999999875678975988557898
Q gi|254780670|r    8 AREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLL   87 (424)
Q Consensus         8 ~r~IlDSRG~PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~~   87 (424)
T Consensus        17 s~~~~~~~--~~vlv~I~td~G~~G~GE~~~~~-------------~p~~~~e~~~~~~~~l~~~~~p~l~g~~~~~~~~   81 (354)
T cd03317          17 SFGTLNER--EFLIVELTDEEGITGYGEVVAFE-------------GPFYTEETNATAWHILKDYLLPLLLGREFSHPEE   81 (354)
T ss_pred             CCEEEEEE--EEEEEEEEECCCCEEEEECCCCC-------------CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             79999999--99999999899999998325788-------------8875704499999999999899976999899999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEC
Q ss_conf             88646530366432212322220244899875266349848882253245647543000003664556776610256514
Q gi|254780670|r   88 IDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMP  167 (424)
Q Consensus        88 iD~~Li~lDgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~NiinGG~HA~~~l~iQEfmIiP  167 (424)
T Consensus        82 ~~~~~~~~~g~~-------~A~said~ALwDl~gK~~~~Pv~~LLGg~~-~~i~~~~s----~~----------------  133 (354)
T cd03317          82 VSERLAPIKGNN-------MAKAGLEMAVWDLYAKAQGQSLAQYLGGTR-DSIPVGVS----IG----------------  133 (354)
T ss_pred             HHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHCCCCHHHHHCCCC-CEEEEEEE----CC----------------
T ss_conf             999987544857-------999999999999999883996799808987-60576687----16----------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHH
Q ss_conf             887748999899999999999875200001---36765576448868468999999999975385311102343110465
Q gi|254780670|r  168 VGAENIREAIRMGAEVFHTLKKELKSKGYS---TNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAAS  244 (424)
Q Consensus       168 ~g~~sf~eal~~~~ev~~~lk~~L~~~g~~---t~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AAs  244 (424)
T Consensus       134 ~-~~~~e~~~~~-------~~~~-~~~Gf~~~Kikv~------~~~-d-i~~v----~~ir~~~---~-d~~l~vDa---  185 (354)
T cd03317         134 I-QDDVEQLLKQ-------IERY-LEEGYKRIKLKIK------PGW-D-VEPL----KAVRERF---P-DIPLMADA---  185 (354)
T ss_pred             C-CCCHHHHHHH-------HHHH-HHCCCCEEEEECC------CHH-H-HHHH----HHHHHHC---C-CCEEEEEC---
T ss_conf             8-9999999999-------9999-9779876764018------512-5-9999----9999865---7-97399626---


Q ss_pred             HHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCHHHHHHHH
Q ss_conf             32027851111468656878999999987654486997767631042379988642388368504300002148885210
Q gi|254780670|r  245 AFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGI  324 (424)
Q Consensus       245 efy~~~kY~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~vTn~~rl~~gi  324 (424)
T Consensus       186 ----N---------~~~~~~~a-~~~~~-l~~~~l~~~EeP~~~~d~~~~~~l~~~~~--~pIa~~E-~~~~~~~~~~~i  247 (354)
T cd03317         186 ----N---------SAYTLADI-PLLKR-LDEYGLLMIEQPLAADDLIDHAELQKLLK--TPICLDE-SIQSAEDARKAI  247 (354)
T ss_pred             ----C---------CCCCHHHH-HHHHH-HCCCCEEEEECCCCCCCHHHHHHHHCCCC--CCEECCC-CCCCHHHHHHHH
T ss_conf             ----8---------88887899-99997-33067013444687227777655641589--9888188-868878899998


Q ss_pred             HCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             038652234254530038999999999998798699950788872358998999819980
Q gi|254780670|r  325 NEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQ  384 (424)
Q Consensus       325 ~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~iaDLAVg~~a~~  384 (424)
T Consensus       248 ~~~a~div~~d~~~~GGit~~~~ia~~A~~~gi~~~~g~~~-~s~i~~aa~~~la~~~~~  306 (354)
T cd03317         248 ELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGML-ESGIGRAHNVALASLPNF  306 (354)
T ss_pred             HCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCC-CCHHHHHHHHHHHHCCCC
T ss_conf             76997646545653670999999999999839978876864-139999999999848786