HHsearch alignment for GI: 254780670 and conserved domain: cd03322
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=99.67 E-value=4e-13 Score=117.52 Aligned_cols=288 Identities=19% Similarity=0.292 Sum_probs=193.5
Q ss_pred EEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10589986886079784299999984897676634478664775467626898651680489999999875678975988
Q gi|254780670|r 2 FINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCD 81 (424)
Q Consensus 2 ~I~~i~~r~IlDSRG~PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~ 81 (424)
T Consensus 1 ki~~~~~~--~~~p~r~~vlVkI~Td~Gi~G~GEa~~~---~~-----------------~~~~~~~i~~~l~p~liG~d 58 (361)
T cd03322 1 KITAIEVI--VTCPGRNFVTLKITTDQGVTGLGDATLN---GR-----------------ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CCEEEEEE--EECCCCCEEEEEEEECCCCEEEEECCCC---CC-----------------HHHHHHHHHHHHHHHHCCCC
T ss_conf 94378999--9889974899999989999899726578---88-----------------69999999999999976998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCE
Q ss_conf 55789888646530366432212322220244899875266349848882253245647543000003664556776610
Q gi|254780670|r 82 ARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQ 161 (424)
Q Consensus 82 ~~dQ~~iD~~Li~lDgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~NiinGG~HA~~~l~iQ 161 (424)
T Consensus 59 p~~ie~i~~~l~~~~~~-~~g~~~~~A~saIDiALWDi~gK~~g~Pv~~LLGG~~r~~i~~--y~~~~~----------- 124 (361)
T cd03322 59 ANRIEDIWQYLYRGAYW-RRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMV--YSHASG----------- 124 (361)
T ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEE--EEECCC-----------
T ss_conf 65899999999874234-6881788899999999999999885995999818977874789--996388-----------
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCH
Q ss_conf 25651488774899989999999999987520000136765576448868468999999999975385311102343110
Q gi|254780670|r 162 EFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDC 241 (424)
Q Consensus 162 EfmIiP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~t~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~ 241 (424)
T Consensus 125 ---------~~~~e~~~~-------a~~~~-~~Gf~~---------~K~k~----~~~-i~avR~~---~G~~~~l~vDa 170 (361)
T cd03322 125 ---------RDIPELLEA-------VERHL-AQGYRA---------IRVQL----PKL-FEAVREK---FGFEFHLLHDV 170 (361)
T ss_pred ---------CCHHHHHHH-------HHHHH-HCCCCE---------EEECH----HHH-HHHHHHH---HCCCCEEECCC
T ss_conf ---------996999999-------99888-659887---------87452----999-9999997---29997085125
Q ss_pred HHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCHHHHH
Q ss_conf 46532027851111468656878999999987654486997767631042379988642388368504300002148885
Q gi|254780670|r 242 AASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLH 321 (424)
Q Consensus 242 AAsefy~~~kY~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~vTn~~rl~ 321 (424)
T Consensus 171 ----------------n~~~~~~~Ai~~~~~-l~~~~l~w~EeP~~~~d~~~~~~l~~~~~--iPIa~gE~-~~~~~~~~ 230 (361)
T cd03322 171 ----------------HHRLTPNQAARFGKD-VEPYRLFWMEDPTPAENQEAFRLIRQHTA--TPLAVGEV-FNSIWDWQ 230 (361)
T ss_pred ----------------CCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCC--CCEEECCC-CCCHHHHH
T ss_conf ----------------568999999999999-87420210217988658899999997469--98882787-68999999
Q ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC-CCHHHHH--HHHHHH
Q ss_conf 2100386522342545300389999999999987986999507888-7235899--899981
Q gi|254780670|r 322 KGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGE-TEDHTIA--DLAVAT 380 (424)
Q Consensus 322 ~gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGE-TeD~~ia--DLAVg~ 380 (424)
T Consensus 231 ~~i~~~a~divq~d~~~~GGit~~~kia~lA~~~gi~~~-~H~~~~~~~i~~aa~~H~~aa~ 291 (361)
T cd03322 231 NLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTG-WHGPTDLSPVGMAAALHLDLWV 291 (361)
T ss_pred HHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHHHC
T ss_conf 999827656205566604879999999999998599374-0478874799999999999867