HHsearch results for GI: 254780670 and protein with PDBid: 1kko_A
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*
Probab=100.00 E-value=0 Score=379.39 Aligned_cols=347 Identities=18% Similarity=0.181 Sum_probs=286.9
Q ss_pred EEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 29999998489767663447866477546762689865168048999999987567897598855789888646530366
Q gi|254780670|r 19 TIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGT 98 (424)
Q Consensus 19 TvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~~iD~~Li~lDgT 98 (424)
+|.|+|.+++|.+|.+-|.....+|.-. .++.|. ....+..|++.|+|.|+|+|++++..+. ..+|++
T Consensus 52 ~v~V~~~l~dG~~g~Gecaav~~~G~gg------rdpl~~---a~~~~~~ie~~iaP~LiG~D~~~~~~l~---~~ld~~ 119 (413)
T 1kko_A 52 CVSVQLILENGAVAVGDCAAVQYSGAGG------RDPLFL---AEHFIPFLNDHIKPLLEGRDVDAFLPNA---RFFDKL 119 (413)
T ss_dssp EEEEEEEETTSCEEEEEECCCTTTTSTT------CCCCCC---HHHHHHHHHHHTHHHHTTCBCSCSHHHH---HHHHHC
T ss_pred EEEEEEEECCCCEEEEEECCCCCCCCCC------CCCHHH---HHHHHHHHHHHCCHHHCCCCCCCHHHHH---HHHHHH
T ss_conf 7999999789988987403556777776------550220---9999999985024364399820499999---999865
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 43221232222-02448998752663498488822532456475430000036645567766102565148877489998
Q gi|254780670|r 99 PNKSRLGANAI-LGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAI 177 (424)
Q Consensus 99 ~nks~lGaNai-lAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~NiinGG~HA~~~l~iQEfmIiP~g~~sf~eal 177 (424)
..+.+.+.|++ ++||+|++.|.|+..++|||+||++.. ..|.|+++|.+++.|.++..+.||+||...- ..+.
T Consensus 120 ~~~~~~~~~Ai~~GVs~Al~Da~Ak~~~~pL~~lLGg~~--~~~~~~~~v~~~~~~g~~~~~~~e~mi~~~~-~~~~--- 193 (413)
T 1kko_A 120 RIDGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEW--QLPCVPEAIPLFGQSGDDRYIAVDKMILKGV-DVLP--- 193 (413)
T ss_dssp EETTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHT--TCCCCCCCCCEECCCTTCTTHHHHHHHHTTC-SEEE---
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC--CCCCCCEEEEEEECCCCCCCCCHHHHHHHHH-HHHH---
T ss_conf 637914889999989999999999984993999957334--7987630365532148632036999999999-9877---
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHHHCCCCCEEECCC
Q ss_conf 99999999999875200001367655764488684689999999999753853111023431104653202785111146
Q gi|254780670|r 178 RMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGE 257 (424)
Q Consensus 178 ~~~~ev~~~lk~~L~~~g~~t~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AAsefy~~~kY~~~~~ 257 (424)
|.+.+ .+...+|.+| .+..+.++.+.+.|+++++.+|.++.|.+|+..+..+.
T Consensus 194 -------~~~~~-----~lK~KvG~~~------~~~~e~l~~~~erI~~ir~~~G~~~~l~vDan~~~~~~--------- 246 (413)
T 1kko_A 194 -------HALIN-----NVEEKLGFKG------EKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLI--------- 246 (413)
T ss_dssp -------ETTCC-----CCCCCCCTTS------HHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHH---------
T ss_pred -------HHHHH-----HEEEEECCCC------CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---------
T ss_conf -------64333-----3246306786------65377898999999999853488867999626645433---------
Q ss_pred CCCCCHHHHHHHHHHHHHHCCE--EEEECCCCCCCHHHHHHHHHHC-------CCCEEEECCCEEECCHHHHHHHHHCCC
Q ss_conf 8656878999999987654486--9977676310423799886423-------883685043000021488852100386
Q gi|254780670|r 258 NLELQPNEMASYLANLVDQYPI--YSIEDGMSEDDWHGWKILTNKI-------GSNCQLVGDDLFVTNPERLHKGINEEV 328 (424)
Q Consensus 258 ~~~~t~~elid~y~~l~~~yPI--~sIEDP~~e~D~~gw~~l~~~~-------g~~~~IvGDDL~vTn~~rl~~gi~~~~ 328 (424)
...+++++++|+..|.+.++. ++||||++++||++|.+.++++ |.+++|++|+..+| +..+++.|+.++
T Consensus 247 -~~~~~~~ai~~~~~L~e~~~~~~l~IEqPv~~~D~~~~i~~la~l~~~l~~~g~~vpI~~DE~~~t-~~d~~~~i~~~a 324 (413)
T 1kko_A 247 -FDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNT-YQDIVDFTDAGS 324 (413)
T ss_dssp -TTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCS-HHHHHHHHHTTC
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCC-HHHHHHHHHHCC
T ss_conf -389999999999999984688764541799996556789999999998760488873432554258-999999876086
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH--HHHHHHCCCHH--EECCCCHHHHHHHHHHHHH
Q ss_conf 5223425453003899999999999879869995078887235899--89998199801--0075611448999999999
Q gi|254780670|r 329 ANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIA--DLAVATNCGQI--KTGSLARSDRIAKYNQLIR 404 (424)
Q Consensus 329 ~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~ia--DLAVg~~a~~i--K~G~~~R~ER~aKyNrLlr 404 (424)
+|.+.||++|+|++||+++++++|+++|+.+++||+++||++++++ |+|+++++.|+ |.|.+++.+++.|||+++|
T Consensus 325 ~d~v~iK~~~~GGitea~~~~~~a~~~Gi~~~igg~~~Et~~s~~a~~hva~at~~~~~l~kpg~~~d~g~~~~~ne~~r 404 (413)
T 1kko_A 325 CHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNR 404 (413)
T ss_dssp CSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHCCSEEECCSCSSSHHHHHHHHHHHHH
T ss_pred CCEEEECHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHH
T ss_conf 88799550323899999999999998699389858858872889999999984386421148998655543388888999
Q ss_pred HHHHHHHC
Q ss_conf 99983110
Q gi|254780670|r 405 IEESLGKQ 412 (424)
Q Consensus 405 Iee~Lg~~ 412 (424)
|+++|+.+
T Consensus 405 ~~~~~~~~ 412 (413)
T 1kko_A 405 TIALLQTK 412 (413)
T ss_dssp HHHHHHC-
T ss_pred HHHHHCCC
T ss_conf 99985379