HHsearch results for GI: 254780670 and protein with PDBid: 2gdq_A
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, enolase, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=99.68 E-value=1.6e-13 Score=118.92 Aligned_cols=291 Identities=15% Similarity=0.200 Sum_probs=196.8
Q ss_pred CEEEEEEEEE--------EEECCC----CCEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 9105899868--------860797----8429999998489767663447866477546762689865168048999999
Q gi|254780670|r 1 MFINDIIARE--------VIDSRG----SPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAF 68 (424)
Q Consensus 1 m~I~~i~~r~--------IlDSRG----~PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~ 68 (424)
|+|++|..+. +..|+| +.++-|+|++++|.+|.+-+... .......
T Consensus 4 ~kI~~ie~~~~~~pl~~p~~~a~g~~~~r~~~lV~i~t~~G~~G~GE~~~~----------------------~~~~~~~ 61 (382)
T 2gdq_A 4 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDW----------------------LPALHVG 61 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECSC----------------------HHHHHHH
T ss_pred CEEEEEEEEEEEEECCCCEECCCEEEEEEEEEEEEEEECCCCEEEEECCCC----------------------HHHHHHH
T ss_conf 678389999998746787476885899879999999989999899954687----------------------4789999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEEC
Q ss_conf 98756789759885578988864653036643221232222024489987526634984888225324564754300000
Q gi|254780670|r 69 VNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNIL 148 (424)
Q Consensus 69 in~~i~~~L~g~~~~dQ~~iD~~Li~lDgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~Nii 148 (424)
+.+.++|.|+|+++.+...+-..|... ...++.|+.+|++-+.++..++|||+.|++.....+|+... .
T Consensus 62 ~~~~l~~~liG~d~~~~~~~~~~l~~~---------~~~a~said~AlwDl~gK~~~~pl~~LLGg~~r~~v~~~~s--~ 130 (382)
T 2gdq_A 62 FTKRIIPFLLGKQAGSRLSLVRTIQKW---------HQRAASAVSMALTEIAAKAADCSVCELWGGRYREEIPVYAS--F 130 (382)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCSCSEEEEEEE--C
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCEEEECC--C
T ss_conf 999999997599900678999999888---------78899999999999886663002100137644441132101--0
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3664556776610256514887748999899999999999875200001---3676557644886846899999999997
Q gi|254780670|r 149 NGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYS---TNVGDEGGFSPNLKTADSALDLIANSIE 225 (424)
Q Consensus 149 nGG~HA~~~l~iQEfmIiP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~---t~vgDEGGfap~~~~~eeaL~ll~eAi~ 225 (424)
..+. .........++ .+.+.+ ++|+. ..+|. .+.++-++.+...-+
T Consensus 131 ~~~~---------------~~~~~~~~~~~-------~~~~~~-~~Gf~~~KiKvg~--------~~~~~d~~~v~~ir~ 179 (382)
T 2gdq_A 131 QSYS---------------DSPQWISRSVS-------NVEAQL-KKGFEQIKVKIGG--------TSFKEDVRHINALQH 179 (382)
T ss_dssp CCBC---------------SSTTHHHHHHH-------HHHHHH-TTTCCEEEEECSS--------SCHHHHHHHHHHHHH
T ss_pred CCCC---------------CCHHHHHHHHH-------HHHHHH-HCCCCCCCCCCCC--------CCHHHHHHHHHHHHH
T ss_conf 0245---------------78155999999-------999999-7078733566789--------999999999999987
Q ss_pred HCCCCCCCCHHHHHCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC-CEEEEECCCCCCCHHHHHHHHHHCCCC
Q ss_conf 5385311102343110465320278511114686568789999999876544-869977676310423799886423883
Q gi|254780670|r 226 KAGYNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQY-PIYSIEDGMSEDDWHGWKILTNKIGSN 304 (424)
Q Consensus 226 ~aGy~~g~di~i~lD~AAsefy~~~kY~~~~~~~~~t~~elid~y~~l~~~y-PI~sIEDP~~e~D~~gw~~l~~~~g~~ 304 (424)
. .|.++.|.+|+. ...+.++.+.+...| ++| ++.++|+|+..+|+++..++..+.+-
T Consensus 180 ~----~g~~~~l~vDaN----------------~~~~~~~a~~~~~~l-~~~~~l~~~EeP~p~~~~~~~~~l~~~~~~- 237 (382)
T 2gdq_A 180 T----AGSSITMILDAN----------------QSYDAAAAFKWERYF-SEWTNIGWLEEPLPFDQPQDYAMLRSRLSV- 237 (382)
T ss_dssp H----HCTTSEEEEECT----------------TCCCHHHHHTTHHHH-TTCSCEEEEECCSCSSCHHHHHHHHTTCSS-
T ss_pred H----CCCCEEEEECCC----------------CCCCHHHHHHHHHHH-HHHHCCCCCCCCCCCCCHHHHHHHHHHCCC-
T ss_conf 5----388179993476----------------532589999999998-765134540367783579999988872899-
Q ss_pred EEEECCCEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 68504300002148885210038652234254530038999999999998798699950788872358998999819
Q gi|254780670|r 305 CQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATN 381 (424)
Q Consensus 305 ~~IvGDDL~vTn~~rl~~gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~iaDLAVg~~ 381 (424)
-|.+|. .++++.-+.+.++.++++.+.+|+..+|.+|++++.+++|+.+|..+++ |-.+ +.-.+++.+.++..
T Consensus 238 -pIa~dE-~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i~~~a~~~g~~v~~-h~~~-~~i~~~a~~~~~a~ 310 (382)
T 2gdq_A 238 -PVAGGE-NMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASA-HAYD-GSLSRLYALFAQAC 310 (382)
T ss_dssp -CEEECT-TCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEECC-CCSS-CSHHHHHHHHHHHT
T ss_pred -CCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-CCCC-HHHHHHHHHHHHHH
T ss_conf -963886-5789999999998278651214755368899999999999973991875-6885-49999999999996