HHsearch results for GI: 254780670 and protein with PDBid: 3caw_A
>3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100}
Probab=98.56 E-value=3e-05 Score=57.64 Aligned_cols=240 Identities=15% Similarity=0.121 Sum_probs=141.8
Q ss_pred CCEEEEEEEECCCCEEEEEC-CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 84299999984897676634-47866477546762689865168048999999987567897598855789888646530
Q gi|254780670|r 17 SPTIEVDVCLEDGSTGRAMV-PSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDL 95 (424)
Q Consensus 17 ~PTvEvev~~~~g~~gra~~-PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~~iD~~Li~l 95 (424)
+.+|-|.|.+++|.+|.+-+ |- +.|.......++..+. +.
T Consensus 26 re~~lv~v~~~~G~~G~GE~aP~----------------p~~~~etl~~~l~~l~-----------------------~~ 66 (330)
T 3caw_A 26 REGVLLKVEWNDGLYGFADLHPW----------------PELGDLSLEEQLSDLR-----------------------MG 66 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEECCC----------------GGGTCCCHHHHHHHHH-----------------------HT
T ss_pred EEEEEEEEEECCCCEEEEEECCC----------------CCCCHHHHHHHHHHHH-----------------------CC
T ss_conf 53599999989989799851588----------------7737330999999998-----------------------06
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHH
Q ss_conf 36643221232222024489987526634984888225324564754300000366455677661025651488774899
Q gi|254780670|r 96 DGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIRE 175 (424)
Q Consensus 96 DgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~NiinGG~HA~~~l~iQEfmIiP~g~~sf~e 175 (424)
.. ..-+.-|+.+|++-+.++..++|||+.++.. ..+.+.. .......+
T Consensus 67 ~~-------~~~a~~aid~Al~Dl~~k~~~~pl~~~l~~~--------~~~~~~~-----------------~~~~~~~~ 114 (330)
T 3caw_A 67 RM-------TTQIEQSIWLARRDALLRKEKKHVFDGGEKI--------KNNYLLS-----------------HFQDLKPG 114 (330)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHTTCBTTTTSCCC--------CBCEEEC-----------------TTSCCCTT
T ss_pred CC-------CHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC--------CCCEECC-----------------CCCHHHHH
T ss_conf 99-------8789999999875099887599425507988--------6303435-----------------78447899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHHHCCCCCE
Q ss_conf 98999999999998752000013---676557644886846899999999997538531110234311046532027851
Q gi|254780670|r 176 AIRMGAEVFHTLKKELKSKGYST---NVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKY 252 (424)
Q Consensus 176 al~~~~ev~~~lk~~L~~~g~~t---~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AAsefy~~~kY 252 (424)
.++. +.++|+.+ .+|. +..+.++.+.+.. |.++.|-+|+
T Consensus 115 ~~~~-----------~~~~G~~~~KiK~g~---------~~~~~~~~i~~~~-------~~~~~l~~Da----------- 156 (330)
T 3caw_A 115 FLDG-----------LKNEGYNTVKVKMGR---------DLQKEADMLTHIA-------ASGMRMRLDF----------- 156 (330)
T ss_dssp HHHH-----------HHHHTCCEEEEECSS---------CHHHHHHHHHHHH-------HTTCEEEEEC-----------
T ss_pred HHHH-----------HHHCCCCEEEECCCC---------CHHHHHHHHHHHC-------CCCCEEEECH-----------
T ss_conf 9999-----------997498757615779---------8799999999854-------8997799623-----------
Q ss_pred EECCCCCCCCHHHHHHHHHHHHH--HCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCHHHHHHHHHCCCCC
Q ss_conf 11146865687899999998765--4486997767631042379988642388368504300002148885210038652
Q gi|254780670|r 253 ILKGENLELQPNEMASYLANLVD--QYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVAN 330 (424)
Q Consensus 253 ~~~~~~~~~t~~elid~y~~l~~--~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~vTn~~rl~~gi~~~~~N 330 (424)
|.-+|.++-+.+...|-. +|.|.++|+|+. .|.++|..+.... .|..|.-.. +.....+...+++
T Consensus 157 -----N~~~~~~~A~~~~~~l~~~~~~~i~~iEqP~~-~d~~~~~~~~~~~----pIa~dEs~~---~~~~~~~~~~~~~ 223 (330)
T 3caw_A 157 -----NALGSWQTFEKFMVNLPLTVRPLIEYVEDPFP-FDFHAWGEARKLA----KIALDNQYD---KVPWGKIASAPFD 223 (330)
T ss_dssp -----TTCSCHHHHHHHHHTSCTTTGGGEEEEECCSS-CCHHHHHHHTTTS----CEEESTTGG---GCCTTTCSSCSCS
T ss_pred -----HHCCCHHHHHHHHHHHHHHCCCCEEECCCCCC-CCHHHHHHHHHCC----CEEEECCCC---CHHHHHHHCCCCC
T ss_conf -----33689999999999845642568134369998-4689999761089----989725324---5346676528588
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCC-CHHHHHHHHHHHCC
Q ss_conf 23425453003899999999999879869995078887-23589989998199
Q gi|254780670|r 331 AILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGET-EDHTIADLAVATNC 382 (424)
Q Consensus 331 ailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGET-eD~~iaDLAVg~~a 382 (424)
..++||.-. ++.+.+++|+.+|+.+++++-.+-. .-..-+|||..++.
T Consensus 224 v~~~k~g~~----g~~~~~~~a~~~~~~~~~~~~~es~ig~~a~~hlaa~~~~ 272 (330)
T 3caw_A 224 VIVIKPAKT----DVDKAVAQCQKWNLKLAVTSYMDHPVGVVHAVGVAMELKD 272 (330)
T ss_dssp EEEECTTTS----CHHHHHHHHHHTTCEEEEBCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCHH----HHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 899877457----6999999999819977845866768999999999983665