HHsearch results for GI: 254780670 and protein with PDBid: 3ddm_A
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=99.55 E-value=1.3e-12 Score=112.20 Aligned_cols=296 Identities=18% Similarity=0.185 Sum_probs=190.5
Q ss_pred CEEEEEEEEEE--------EECCC----CCEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 91058998688--------60797----8429999998489767663447866477546762689865168048999999
Q gi|254780670|r 1 MFINDIIAREV--------IDSRG----SPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAF 68 (424)
Q Consensus 1 m~I~~i~~r~I--------lDSRG----~PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~ 68 (424)
|+|.+|+.+.+ -.|.| +++|-|+|.+++|.+|.+-+.+.... -+.......
T Consensus 10 ~~i~~i~~~~~~~Pl~~P~~~s~g~~~~r~~vlV~v~t~~G~~G~GE~~~~~~~-----------------~~~~~~~~~ 72 (392)
T 3ddm_A 10 ITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPA-----------------CGAEHRARL 72 (392)
T ss_dssp BCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCEEEEECCCCSST-----------------THHHHHHHH
T ss_pred CCHHEEEEEEEEEECCCCEECCCEEEEEEEEEEEEEEECCCCEEEEEECCCCCC-----------------CCHHHHHHH
T ss_conf 732269999999756882788588999999999999989999999874178877-----------------767899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCCCC--CCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 987567897598855789888646530366--43221--23222202448998752663498488822532456475430
Q gi|254780670|r 69 VNDEIRTALLGCDARDQLLIDKIMIDLDGT--PNKSR--LGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPL 144 (424)
Q Consensus 69 in~~i~~~L~g~~~~dQ~~iD~~Li~lDgT--~nks~--lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~ 144 (424)
+++.++|.|+|+++.|...+...|...... ..... ....++-|+.||++-+.++..++|||+.+++... .+|+-.
T Consensus 73 i~~~l~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~A~said~ALwDl~gK~~~~Pv~~llGg~~~-~i~vya 151 (392)
T 3ddm_A 73 VETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAGQPLWAWLGGSGD-RIGVYA 151 (392)
T ss_dssp HHHTHHHHHTTSCBSSHHHHHHHHHHTTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCC-EEEEEE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCC-CEEEEE
T ss_conf 9999999976998689899999999999886542165446899999999879989755149876661587532-113320
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 000036645567766102565148877489998999999999998752000013---67655764488684689999999
Q gi|254780670|r 145 MNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYST---NVGDEGGFSPNLKTADSALDLIA 221 (424)
Q Consensus 145 ~NiinGG~HA~~~l~iQEfmIiP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~t---~vgDEGGfap~~~~~eeaL~ll~ 221 (424)
. ...| .+..+.++ +. .++|+.+ .+|- ....-++.+.
T Consensus 152 --~----------------~~~~---~~~~e~~~----------~~-~~~Gf~~~K~k~g~---------~~~~D~~~v~ 190 (392)
T 3ddm_A 152 --S----------------GINP---ENPEDVVA----------RK-AAEGYRAFKLKVGF---------DDARDVRNAL 190 (392)
T ss_dssp --E----------------EECS---SSHHHHHH----------HH-HHHTCCCEEEECSS---------CHHHHHHHHH
T ss_pred --C----------------CCCC---CCHHHHHH----------HH-HHHCCCCCCCCCCC---------CCHHHHHHHH
T ss_conf --4----------------5788---77999999----------99-98388700244345---------5378899999
Q ss_pred HHHHHCCCCCCCCHHHHHCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCC-HHHHHHHHHH
Q ss_conf 999753853111023431104653202785111146865687899999998765448699776763104-2379988642
Q gi|254780670|r 222 NSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDD-WHGWKILTNK 300 (424)
Q Consensus 222 eAi~~aGy~~g~di~i~lD~AAsefy~~~kY~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D-~~gw~~l~~~ 300 (424)
.+-+. .|.++.|.+|+- .-.+.++-+++... +++|.+.++|+|+..+| +.+|+.+.+.
T Consensus 191 ~~r~~----~g~~~~l~vDaN----------------~~~~~~~A~~~~~~-l~~~~~~~iEeP~~~~~~~~~~~~l~~~ 249 (392)
T 3ddm_A 191 HVREL----LGAATPLMADAN----------------QGWDLPRARQMAQR-LGPAQLDWLEEPLRADRPAAEWAELAQA 249 (392)
T ss_dssp HHHHH----HCSSSCEEEECT----------------TCCCHHHHHHHHHH-HGGGCCSEEECCSCTTSCHHHHHHHHHH
T ss_pred HHHHH----CCCCEEEEECCC----------------CCCCCCHHHHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 99863----498647986036----------------77763124577888-6423754101677735707888887505
Q ss_pred CCCCEEEECCCEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC--HHHHHHHHH
Q ss_conf 388368504300002148885210038652234254530038999999999998798699950788872--358998999
Q gi|254780670|r 301 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETE--DHTIADLAV 378 (424)
Q Consensus 301 ~g~~~~IvGDDL~vTn~~rl~~gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETe--D~~iaDLAV 378 (424)
.+ +-|.+|.- +.+...+++.++.++++.+.+|+..+|-+|++++.+++|+.+|+.+ +.|-. ++. -...+||+.
T Consensus 250 ~~--ipia~~E~-~~~~~~~~~~i~~~~~di~~~d~~~~GGit~~~~i~~~A~~~gi~v-~~h~~-~~~i~~~a~~hl~a 324 (392)
T 3ddm_A 250 AP--MPLAGGEN-IAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLRY-CPHYL-GAGIGLQASAHLLA 324 (392)
T ss_dssp CS--SCEEECTT-CCSHHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHTTCEE-CCEEC-SCHHHHHHHHHHHH
T ss_pred CC--CEEECCCC-CCCHHHHHCHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEE-EECCC-CCHHHHHHHHHHHH
T ss_conf 87--30443654-3544442021103843799216321688999999999998679859-96689-86899999999998
Q ss_pred HHC
Q ss_conf 819
Q gi|254780670|r 379 ATN 381 (424)
Q Consensus 379 g~~ 381 (424)
++.
T Consensus 325 a~p 327 (392)
T 3ddm_A 325 AVP 327 (392)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 573