HHsearch results for GI: 254780670 and protein with PDBid: 3h12_A
>3h12_A Mandelate racemase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, E PSI-2; 1.50A {Bordetella bronchiseptica} PDB: 3op2_A*
Probab=99.66 E-value=1.8e-13 Score=118.43 Aligned_cols=301 Identities=18% Similarity=0.217 Sum_probs=193.7
Q ss_pred CEEEEEEEEEEE----------ECCC----CCEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 910589986886----------0797----84299999984897676634478664775467626898651680489999
Q gi|254780670|r 1 MFINDIIAREVI----------DSRG----SPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI 66 (424)
Q Consensus 1 m~I~~i~~r~Il----------DSRG----~PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av 66 (424)
|+|++|..+.+- .+.+ ++.|=|+|++++|..|.+-+..+.+ .....
T Consensus 3 MKI~~i~~~~~~~Pl~~~~~~~~~~~~~~~~~~vlV~v~td~G~~G~GE~~~~~~--------------------~~~~~ 62 (397)
T 3h12_A 3 LKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSGPYD--------------------LAVLK 62 (397)
T ss_dssp CCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCCEEECCCSSSC--------------------HHHHH
T ss_pred CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEECCCCCC--------------------HHHHH
T ss_conf 3887799999973578885100253047542799999998999889984368878--------------------89999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 9998756789759885578988864653036643--22123222202448998752663498488822532456475430
Q gi|254780670|r 67 AFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPN--KSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPL 144 (424)
Q Consensus 67 ~~in~~i~~~L~g~~~~dQ~~iD~~Li~lDgT~n--ks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~ 144 (424)
..+.+.++|.|+|+|+.+-..+-+.|...--..+ ...+...++-|+-+|++-+.++..++|||+.|++......++..
T Consensus 63 ~~i~~~l~p~liG~d~~~i~~i~~~~~~~~~~~~~~~~~~~~~A~said~AlwDl~gK~~~~Pv~~lLG~~~~~~~~~~~ 142 (397)
T 3h12_A 63 RAIEDVIGPQLIGEDPANINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAY 142 (397)
T ss_dssp HHHHHTTGGGTTTSCTTCHHHHHHHHHHHTHHHHHCSBSHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTSCSCSSCEEEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999997699878999999999986565404653167899999999999998645257630126874333453102
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 000036645567766102565148877489998999999999998752000013---67655764488684689999999
Q gi|254780670|r 145 MNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYST---NVGDEGGFSPNLKTADSALDLIA 221 (424)
Q Consensus 145 ~NiinGG~HA~~~l~iQEfmIiP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~t---~vgDEGGfap~~~~~eeaL~ll~ 221 (424)
...+. ...+..+..+.. ++ ..++|+.+ .+|. ...+-.+.+.
T Consensus 143 ~~~~~-------------------~~~~~~~~~~~~-------~~-~~~~Gf~~~Kik~g~---------~~~~d~~~v~ 186 (397)
T 3h12_A 143 ASSIY-------------------WDLTPDQAADEL-------AG-WVEQGFTAAKLKVGR---------APRKDAANLR 186 (397)
T ss_dssp EEEEC-------------------SSCCHHHHHHHH-------HH-HHHHTCSEEEEECCS---------CHHHHHHHHH
T ss_pred EECCC-------------------CCCCHHHHHHHH-------HH-HHHHCCCCCCCCCCC---------CCHHHHHHHH
T ss_conf 21033-------------------578879999999-------98-787377631013576---------6088999999
Q ss_pred HHHHHCCCCCCCCHHHHHCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 99975385311102343110465320278511114686568789999999876544869977676310423799886423
Q gi|254780670|r 222 NSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKI 301 (424)
Q Consensus 222 eAi~~aGy~~g~di~i~lD~AAsefy~~~kY~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~ 301 (424)
...+. .|.++.|.+|+ +.-.+.++-+.+... +++|.+..+|+|+..+|+++...+....
T Consensus 187 ~~r~~----~g~~~~l~vDa----------------N~~~~~~~A~~~~~~-l~~~~~~~~EeP~~~~~~~~~~~~~~~~ 245 (397)
T 3h12_A 187 AMRQR----VGADVEILVDA----------------NQSLGRHDALAMLRI-LDEAGCYWFEEPLSIDDIEGHRILRAQG 245 (397)
T ss_dssp HHHHH----HCSSSEEEEEC----------------TTCCCHHHHHHHHHH-HHHTTCSEEESCSCTTCHHHHHHHHTTC
T ss_pred HHHHH----CCCCCEEEECC----------------CCCCCHHHHHHHHHH-HHHCCCCEEECCCCCCHHHHHHHHHHCC
T ss_conf 97643----39841463044----------------446999999999987-6651884586687855389999997315
Q ss_pred CCCEEEECCCEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH--HHHHHHH
Q ss_conf 88368504300002148885210038652234254530038999999999998798699950788872358--9989998
Q gi|254780670|r 302 GSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHT--IADLAVA 379 (424)
Q Consensus 302 g~~~~IvGDDL~vTn~~rl~~gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~--iaDLAVg 379 (424)
. .+-|.+|. -++++.-+++.++.++++.+-+|+.-+|-+|++++.+.+|+.+|..+ +.|.. ++.=.+ -+||+.+
T Consensus 246 ~-~~pIa~gE-~~~~~~~~~~~i~~~a~div~~d~~~~GGit~~~~ia~~A~~~gi~~-~~h~~-~~~i~~aa~~hlaaa 321 (397)
T 3h12_A 246 T-PVRIATGE-NLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAW-NPHTF-NDIITVAANLHLVAA 321 (397)
T ss_dssp C-SSEEEECT-TCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEE-CCCCT-TCHHHHHHHHHHHHH
T ss_pred C-CCCEECCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE-EECCC-CCHHHHHHHHHHHHH
T ss_conf 8-98620553-02347888875214666543577786887899999999999879979-82788-738999999999996
Q ss_pred HCC
Q ss_conf 199
Q gi|254780670|r 380 TNC 382 (424)
Q Consensus 380 ~~a 382 (424)
+..
T Consensus 322 ~~n 324 (397)
T 3h12_A 322 SPH 324 (397)
T ss_dssp SCS
T ss_pred CCC
T ss_conf 788