HHsearch results for GI: 254780670 and protein with PDBid: 3h12_A

>3h12_A Mandelate racemase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, E PSI-2; 1.50A {Bordetella bronchiseptica} PDB: 3op2_A*
Probab=99.66  E-value=1.8e-13  Score=118.43  Aligned_cols=301  Identities=18%  Similarity=0.217  Sum_probs=193.7

Q ss_pred             CEEEEEEEEEEE----------ECCC----CCEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf             910589986886----------0797----84299999984897676634478664775467626898651680489999
Q gi|254780670|r    1 MFINDIIAREVI----------DSRG----SPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI   66 (424)
Q Consensus         1 m~I~~i~~r~Il----------DSRG----~PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av   66 (424)
                      |+|++|..+.+-          .+.+    ++.|=|+|++++|..|.+-+..+.+                    .....
T Consensus         3 MKI~~i~~~~~~~Pl~~~~~~~~~~~~~~~~~~vlV~v~td~G~~G~GE~~~~~~--------------------~~~~~   62 (397)
T 3h12_A            3 LKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSGPYD--------------------LAVLK   62 (397)
T ss_dssp             CCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCCEEECCCSSSC--------------------HHHHH
T ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEECCCCCC--------------------HHHHH
T ss_conf             3887799999973578885100253047542799999998999889984368878--------------------89999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCC
Q ss_conf             9998756789759885578988864653036643--22123222202448998752663498488822532456475430
Q gi|254780670|r   67 AFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPN--KSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPL  144 (424)
Q Consensus        67 ~~in~~i~~~L~g~~~~dQ~~iD~~Li~lDgT~n--ks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~  144 (424)
                      ..+.+.++|.|+|+|+.+-..+-+.|...--..+  ...+...++-|+-+|++-+.++..++|||+.|++......++..
T Consensus        63 ~~i~~~l~p~liG~d~~~i~~i~~~~~~~~~~~~~~~~~~~~~A~said~AlwDl~gK~~~~Pv~~lLG~~~~~~~~~~~  142 (397)
T 3h12_A           63 RAIEDVIGPQLIGEDPANINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAY  142 (397)
T ss_dssp             HHHHHTTGGGTTTSCTTCHHHHHHHHHHHTHHHHHCSBSHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTSCSCSSCEEEE
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf             99999999997699878999999999986565404653167899999999999998645257630126874333453102


Q ss_pred             EEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             000036645567766102565148877489998999999999998752000013---67655764488684689999999
Q gi|254780670|r  145 MNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYST---NVGDEGGFSPNLKTADSALDLIA  221 (424)
Q Consensus       145 ~NiinGG~HA~~~l~iQEfmIiP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~t---~vgDEGGfap~~~~~eeaL~ll~  221 (424)
                      ...+.                   ...+..+..+..       ++ ..++|+.+   .+|.         ...+-.+.+.
T Consensus       143 ~~~~~-------------------~~~~~~~~~~~~-------~~-~~~~Gf~~~Kik~g~---------~~~~d~~~v~  186 (397)
T 3h12_A          143 ASSIY-------------------WDLTPDQAADEL-------AG-WVEQGFTAAKLKVGR---------APRKDAANLR  186 (397)
T ss_dssp             EEEEC-------------------SSCCHHHHHHHH-------HH-HHHHTCSEEEEECCS---------CHHHHHHHHH
T ss_pred             EECCC-------------------CCCCHHHHHHHH-------HH-HHHHCCCCCCCCCCC---------CCHHHHHHHH
T ss_conf             21033-------------------578879999999-------98-787377631013576---------6088999999


Q ss_pred             HHHHHCCCCCCCCHHHHHCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHC
Q ss_conf             99975385311102343110465320278511114686568789999999876544869977676310423799886423
Q gi|254780670|r  222 NSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKI  301 (424)
Q Consensus       222 eAi~~aGy~~g~di~i~lD~AAsefy~~~kY~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~  301 (424)
                      ...+.    .|.++.|.+|+                +.-.+.++-+.+... +++|.+..+|+|+..+|+++...+....
T Consensus       187 ~~r~~----~g~~~~l~vDa----------------N~~~~~~~A~~~~~~-l~~~~~~~~EeP~~~~~~~~~~~~~~~~  245 (397)
T 3h12_A          187 AMRQR----VGADVEILVDA----------------NQSLGRHDALAMLRI-LDEAGCYWFEEPLSIDDIEGHRILRAQG  245 (397)
T ss_dssp             HHHHH----HCSSSEEEEEC----------------TTCCCHHHHHHHHHH-HHHTTCSEEESCSCTTCHHHHHHHHTTC
T ss_pred             HHHHH----CCCCCEEEECC----------------CCCCCHHHHHHHHHH-HHHCCCCEEECCCCCCHHHHHHHHHHCC
T ss_conf             97643----39841463044----------------446999999999987-6651884586687855389999997315


Q ss_pred             CCCEEEECCCEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH--HHHHHHH
Q ss_conf             88368504300002148885210038652234254530038999999999998798699950788872358--9989998
Q gi|254780670|r  302 GSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHT--IADLAVA  379 (424)
Q Consensus       302 g~~~~IvGDDL~vTn~~rl~~gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~--iaDLAVg  379 (424)
                      . .+-|.+|. -++++.-+++.++.++++.+-+|+.-+|-+|++++.+.+|+.+|..+ +.|.. ++.=.+  -+||+.+
T Consensus       246 ~-~~pIa~gE-~~~~~~~~~~~i~~~a~div~~d~~~~GGit~~~~ia~~A~~~gi~~-~~h~~-~~~i~~aa~~hlaaa  321 (397)
T 3h12_A          246 T-PVRIATGE-NLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAW-NPHTF-NDIITVAANLHLVAA  321 (397)
T ss_dssp             C-SSEEEECT-TCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEE-CCCCT-TCHHHHHHHHHHHHH
T ss_pred             C-CCCEECCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE-EECCC-CCHHHHHHHHHHHHH
T ss_conf             8-98620553-02347888875214666543577786887899999999999879979-82788-738999999999996


Q ss_pred             HCC
Q ss_conf             199
Q gi|254780670|r  380 TNC  382 (424)
Q Consensus       380 ~~a  382 (424)
                      +..
T Consensus       322 ~~n  324 (397)
T 3h12_A          322 SPH  324 (397)
T ss_dssp             SCS
T ss_pred             CCC
T ss_conf             788