RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
>gnl|CDD|178845 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 808 bits (2090), Expect = 0.0
Identities = 288/422 (68%), Positives = 343/422 (81%), Gaps = 3/422 (0%)
Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59
I DIIARE++DSRG+PT+EV+V LEDG+ GRA VPSGASTG EA ELRD +K RY G
Sbjct: 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLG 61
Query: 60 KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119
KGVLKA+ VN+EI AL+G DA DQ IDK MI+LDGTPNKS+LGANAILGVSLAV+KA
Sbjct: 62 KGVLKAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKA 121
Query: 120 AAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRM 179
AA + LPLY+YLGG +A +LPVP+MNI+NGG HADN +D QEFMIMPVGA + +EA+RM
Sbjct: 122 AADSLGLPLYRYLGGPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEALRM 181
Query: 180 GAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIAL 239
GAEVFHTLKK LK KG ST VGDEGGF+PNLK+ + ALDLI +IEKAGY G+D+ +AL
Sbjct: 182 GAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGEDIALAL 241
Query: 240 DCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTN 299
DCAAS F+K KY+L+GE L EM YLA LVD+YPI SIEDG+ E+DW GWK+LT
Sbjct: 242 DCAASEFYKDGKYVLEGEGLT--SEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTE 299
Query: 300 KIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPS 359
K+G QLVGDDLFVTN +RL KGI + AN+ILIK NQIG+++ETL+ IE A+ AGY +
Sbjct: 300 KLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTA 359
Query: 360 IISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRS 419
++SHRSGETED TIADLAVATN GQIKTGSL+RS+RIAKYNQL+RIEE LG A++AG+
Sbjct: 360 VVSHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKK 419
Query: 420 IL 421
Sbjct: 420 AF 421
>gnl|CDD|162181 TIGR01060, eno, phosphopyruvate hydratase. Alternate name:
enolase.
Length = 425
Score = 690 bits (1782), Expect = 0.0
Identities = 279/420 (66%), Positives = 343/420 (81%), Gaps = 3/420 (0%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
I DI ARE++DSRG+PT+EV+V LEDG+ GRA VPSGASTG EA ELRD +K RY GKG
Sbjct: 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60
Query: 62 VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121
VLKA+ VND I AL+G DA DQ ID+IMI+LDGTPNKS+LGANAILGVS+AV+KAAA
Sbjct: 61 VLKAVENVNDIIAPALIGMDAFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAA 120
Query: 122 QTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGA 181
++ LPLY+YLGG +A++LPVP+MNI+NGG HADN LDFQEFMIMPVGA++ REA+RMGA
Sbjct: 121 KSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFREALRMGA 180
Query: 182 EVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDC 241
EVFH LKK LK KG +T VGDEGGF+PNL + + AL++I+ +IEKAGY G+D+ +ALDC
Sbjct: 181 EVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDC 240
Query: 242 AASAFF--KKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTN 299
AAS F+ + KY+ KGEN +L EM Y LV++YPI SIEDG+SE+DW GW LT
Sbjct: 241 AASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTK 300
Query: 300 KIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPS 359
++G Q+VGDDLFVTN E L +GI VAN+ILIKPNQIG+++ETL+ +E A+ AGY +
Sbjct: 301 ELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTA 360
Query: 360 IISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRS 419
+ISHRSGETED TIADLAVA N GQIKTGSL+RS+RIAKYNQL+RIEE LG A++AG++
Sbjct: 361 VISHRSGETEDTTIADLAVALNAGQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKN 420
>gnl|CDD|173375 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 526 bits (1358), Expect = e-150
Identities = 235/440 (53%), Positives = 299/440 (67%), Gaps = 27/440 (6%)
Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59
I I ARE++DSRG+PT+EVD+ E G RA VPSGASTGI+EA ELRD +K RY G
Sbjct: 2 STIKSIKAREILDSRGNPTVEVDLTTEKGVF-RAAVPSGASTGIYEALELRDGDKSRYLG 60
Query: 60 KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMID-LDGTPN-----KSRLGANAILGVS 113
KGVLKA+ VN+ I AL+G D DQ +DK+M++ LDGT N KS+LGANAIL VS
Sbjct: 61 KGVLKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVS 120
Query: 114 LAVSKAAAQTSNLPLYKYL----GGCSAHI-LPVPLMNILNGGIHADNALDFQEFMIMPV 168
+AV++AAA +PLYKYL G + LPVP N++NGG HA N L FQEFMI PV
Sbjct: 121 MAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPV 180
Query: 169 GAENIREAIRMGAEVFHTLKKELKSKGY---STNVGDEGGFSPNLKTADSALDLIANSIE 225
GA + +EA+RMGAEV+H+LK +K K Y +TNVGDEGGF+PN+K + ALDL+ +I+
Sbjct: 181 GAPSFKEALRMGAEVYHSLKSVIKKK-YGLDATNVGDEGGFAPNIKDPEEALDLLVEAIK 239
Query: 226 KAGYNAGKDLLIALDCAASAFFKKEK--YIL------KGENLELQPNEMASYLANLVDQY 277
KAGY GK + I +D AAS F+ KEK Y L ++ +L E+ +LV +Y
Sbjct: 240 KAGYE-GK-VKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKY 297
Query: 278 PIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPN 337
PI SIED +DDW + LT IG Q+VGDDL VTNP R+ K I ++ NA+L+K N
Sbjct: 298 PIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVN 357
Query: 338 QIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIA 397
QIG+V+E + + AQ G+ ++SHRSGETED IADL V GQIKTG+ RS+R+A
Sbjct: 358 QIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLA 417
Query: 398 KYNQLIRIEESLGKQAKFAG 417
KYNQL+RIEE LG A +AG
Sbjct: 418 KYNQLLRIEEELGSNAVYAG 437
>gnl|CDD|177785 PLN00191, PLN00191, enolase.
Length = 457
Score = 501 bits (1292), Expect = e-142
Identities = 225/429 (52%), Positives = 292/429 (68%), Gaps = 17/429 (3%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGV 62
I + AR++IDSRG+PT+EVD+ G RA VPSGASTGI+EA ELRD +K Y GKGV
Sbjct: 28 ITKVKARQIIDSRGNPTVEVDLHTSKG-MFRAAVPSGASTGIYEALELRDGDKDYLGKGV 86
Query: 63 LKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122
LKA+ VN+ I AL+G D DQ ID M++LDGTPNK +LGANAIL VSLAV KA A
Sbjct: 87 LKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAA 146
Query: 123 TSNLPLYKY---LGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRM 179
+PLYK+ L G +LPVP N++NGG HA N L QEFMI+PVGA + +EA++M
Sbjct: 147 EKGVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQM 206
Query: 180 GAEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLI 237
G+EV+H LK +K K + NVGDEGGF+PN++ L+L+ +IEKAGY GK + I
Sbjct: 207 GSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAGYT-GK-IKI 264
Query: 238 ALDCAASAFFKKE-KYIL--KGEN----LELQPNEMASYLANLVDQYPIYSIEDGMSEDD 290
+D AAS F+ K+ KY L K EN + +E+ V YPI SIED +DD
Sbjct: 265 GMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQDD 324
Query: 291 WHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIE 350
W W LT+ + Q+VGDDL VTNP+R+ K I E+ NA+L+K NQIG+V+E++ ++
Sbjct: 325 WEHWAKLTSL--EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVK 382
Query: 351 KAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLG 410
++ AG+ + SHRSGETED IADLAV GQIKTG+ RS+R+AKYNQL+RIEE LG
Sbjct: 383 MSKAAGWGVMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELG 442
Query: 411 KQAKFAGRS 419
+A +AG +
Sbjct: 443 DEAVYAGEN 451
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 88.3 bits (219), Expect = 3e-18
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGV 62
I +II R + G ++EVDV + D GR P I E L E
Sbjct: 4 IENIIGRVAVLRGGKYSVEVDV-ITDSGFGRFAAP------IDENPSLYIAEAH------ 50
Query: 63 LKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122
+A++ V++ I L+G DA +Q LID + ++DGT + S +GAN L VS+AV+KAAA
Sbjct: 51 -RAVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAAN 109
Query: 123 TSNLPLYKYLGGCSAHILPVPLMNILNG 150
+ N+PLY Y+GG LPVP++
Sbjct: 110 SKNMPLYSYIGGTFTTELPVPILEFAED 137
Score = 47.1 bits (112), Expect = 8e-06
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 330 NAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGS 389
NA+ IKP +G++++ N + + I++ E+ D + LAV C +
Sbjct: 255 NALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRCPAM---- 310
Query: 390 LARSDRIAKYNQLIRIEESLGKQAK 414
L D + K N+L RI E LG++ +
Sbjct: 311 LIHKDSVEKINELNRIAEDLGERGR 335
>gnl|CDD|173571 PTZ00378, PTZ00378, hypothetical protein; Provisional.
Length = 518
Score = 42.6 bits (100), Expect = 2e-04
Identities = 53/269 (19%), Positives = 95/269 (35%), Gaps = 53/269 (19%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDG---STGRAMVPS------------GASTGIHEA 47
I ++ EV+ G + + L +G S+G + PS + EA
Sbjct: 51 IRALVHNEVLSPAGETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEA 110
Query: 48 FELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGAN 107
+ YF + LL ARDQ D + T + +G+
Sbjct: 111 -----LQNSYFPR----------------LLQLGARDQREFDSTLRAALSTSPLANVGSA 149
Query: 108 AILGVSLAVSKAAAQTSNLPLYKYLGG-----CSAHILPVP--LMNILNGGIHADNALDF 160
+S+ S AAA+ ++PL++YL S +P + G + L
Sbjct: 150 VQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCITFFGPGNPSTARLAL 209
Query: 161 QEFMIMPVGAEN--IREAIRMGAEVFHTLKKELKSKGYSTNVGDEGG--FSPNLKTADSA 216
+ + PV +RE ++ FH + ++++V +G + D A
Sbjct: 210 KSVLFSPVMPSGTVLRERMQKIFAAFHHFC-----QSHNSSVRSDGSLHWDGFANLTD-A 263
Query: 217 LDLIANSIEKAGYNAGKDLLIALDCAASA 245
+ L ++ G D+ + L AAS
Sbjct: 264 VKLATEALRAVQLTPGTDVCLGLRMAAST 292
>gnl|CDD|162607 TIGR01927, menC_gamma/gm+, o-succinylbenzoic acid (OSB) synthetase.
This model describes the enzyme o-succinylbenzoic acid
synthetase (menC) that is involved in one of the steps
of the menaquinone biosynthesis pathway. It takes SHCHC
and makes it into 2-succinylbenzoate. Included in this
model are gamma proteobacteria and archaea. Many of the
com-names of the proteins identified by the model are
identified as O-succinylbenzoyl-CoA synthase in error.
Length = 307
Score = 32.5 bits (74), Expect = 0.22
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 324 INEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIIS 362
A++IKP IGS ++ + +KA G ++ S
Sbjct: 225 YGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFS 263
>gnl|CDD|179938 PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional.
Length = 322
Score = 31.7 bits (73), Expect = 0.34
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 331 AILIKPNQIGSVSETLNTIEKAQMAGYPSIIS 362
AI+IKP GS+ + IE+A G ++IS
Sbjct: 233 AIVIKPTLTGSLEKCQELIEQAHALGLRAVIS 264
>gnl|CDD|152360 pfam11925, DUF3443, Protein of unknown function (DUF3443). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 400 to 434 amino acids in
length. This protein has two conserved sequence motifs:
NPV and DNNG.
Length = 369
Score = 30.7 bits (70), Expect = 0.73
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 104 LGANAILGVSLAVS---KAAAQTSNLPLYKYLGG---CSAHILPVPLM 145
LGAN ILG+ L A A ++ Y G C++ +P+
Sbjct: 139 LGANGILGIGLFPQDCGAACATSALNGNYYACPGGNSCTSTTVPLAQQ 186
>gnl|CDD|180727 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 29.5 bits (67), Expect = 1.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 22 VDVCLEDGSTGRAMVPSGASTGIHEAFELRDQ------EKRYFGKGVLKAIA 67
V V DG+TGR + GA G++ +R E Y G+GV +A+
Sbjct: 140 VTVTFSDGTTGRYDLVVGAD-GLYSK--VRSLVFPDEPEPEYTGQGVWRAVL 188
>gnl|CDD|183792 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 29.3 bits (66), Expect = 2.0
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 313 FVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361
FVTNPE++ + + IL+ +I ++ + L +E +G P +I
Sbjct: 204 FVTNPEKMRAELEDPY---ILLHEKKISNLQDLLPILEAVVQSGRPLLI 249
>gnl|CDD|150140 pfam09365, DUF2461, Conserved hypothetical protein (DUF2461).
Members of this family are widely (though sparsely)
distributed bacterial proteins, about 230 residues in
length. All members have a motif RxxRDxRFxxx[DN]KxxY.
The function of this protein family is unknown.
Length = 212
Score = 27.9 bits (63), Expect = 5.6
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 173 IREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTA 213
IR+AI E F + + L KGY + + LK A
Sbjct: 125 IRQAIDDNPEEFKKILEALSFKGYFGVLEGDK-----LKRA 160
>gnl|CDD|185337 PRK15440, PRK15440, L-rhamnonate dehydratase; Provisional.
Length = 394
Score = 27.8 bits (62), Expect = 6.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 107 NAILGVSLAVSKAAAQTSNLPLYKYLGG 134
N I V LA+ + LP+YK LGG
Sbjct: 123 NTISCVDLALWDLLGKVRGLPVYKLLGG 150
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 27.2 bits (61), Expect = 7.6
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 16/58 (27%)
Query: 160 FQEFMIMPVGAENIREAIRMG------AEVFHTLKK-------ELKSKGYSTNVGDEG 204
FQ+ + +I + IR+G E+ ++ E K GY T VG+ G
Sbjct: 415 FQDAGLF---NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469
>gnl|CDD|183791 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 27.1 bits (61), Expect = 8.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 313 FVTNPERLHKGINEEVANA-ILIKPNQIGSVSETLNTIEKAQMAGYPSII 361
FVT+PER+ + + IL+ +I S+ + L +EK +G P +I
Sbjct: 203 FVTDPERMEA----VLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLI 248
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,878,214
Number of extensions: 453627
Number of successful extensions: 897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 30
Length of query: 424
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 328
Effective length of database: 3,920,105
Effective search space: 1285794440
Effective search space used: 1285794440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)