RPSBLAST alignment of GI: 254780670 and protein with PDBid: 3ddm
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392
Score = 47.0 bits (111), Expect = 8e-06
Identities = 49/356 (13%), Positives = 81/356 (22%), Gaps = 85/356 (23%)
Query: 7 IAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI 66
+ + R P + V+V DG+ G V E
Sbjct: 30 TSFGTMHDR--PAVLVEVEDSDGAVGWGEVWCNFPACGAEHRA----------------- 70
Query: 67 AFVNDEIRTALLGCDARDQL----LIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122
V + L D ++ L + A AI G+ +A+ AA+
Sbjct: 71 RLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAAR 130
Query: 123 TSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAE 182
+ PL+ +LGG I + GI+ +N D R AE
Sbjct: 131 RAGQPLWAWLGGSGDRI------GVYASGINPENPED---------------VVARKAAE 169
Query: 183 VFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCA 242
+ K ++ D A D+ G + D
Sbjct: 170 GYRAFKLKVG--------------------FDDARDVRN--ALHVRELLGAATPLMADA- 206
Query: 243 ASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIG 302
N L + E ++ W L
Sbjct: 207 ---------------NQGWDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAELAQAAP 251
Query: 303 SNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYP 358
+ + + + + G S L AG
Sbjct: 252 ---MPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLR 304