RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} Length = 452 Score = 541 bits (1395), Expect = e-154 Identities = 218/441 (49%), Positives = 288/441 (65%), Gaps = 25/441 (5%) Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59 + I DI+ARE++DSRG+PTIEVDV E G RA VPSGASTGI+EA ELRD++ RY G Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGG-VFRAAVPSGASTGIYEALELRDKDPKRYLG 60 Query: 60 KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMID-LDGTPN-----KSRLGANAILGVS 113 KGVL A+ V EI+ ALLG D DQ ID +M++ LDGT N KS+LGANAILGVS Sbjct: 61 KGVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVS 120 Query: 114 LAVSKAAAQTSNLPLYKYLGGCSAH-----ILPVPLMNILNGGIHADNALDFQEFMIMPV 168 +A +A A + LPLYKY+ + ++PVP N++NGG HA N L QEF+I PV Sbjct: 121 IACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPV 180 Query: 169 GAENIREAIRMGAEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEK 226 GA NIREAIR G+E +H LK +K+K +TNVGDEGGF+PN+ TA+ AL+L+ +I+ Sbjct: 181 GAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKA 240 Query: 227 AGYNAGKDLLIALDCAASAFFKKE--KYILKGENLELQPN------EMASYLANLVDQYP 278 AGY + IA D AAS F+K++ KY L + + ++ + +YP Sbjct: 241 AGYEG--KIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP 298 Query: 279 IYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQ 338 I S+ED +DD+ + T +G Q++GDD+ VTN R+ K + ++ N +L+K NQ Sbjct: 299 IISVEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQ 358 Query: 339 IGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAK 398 IGSV+E + AQ +G+ +SHRSGETED IADL V CGQIK+GS RS+R+ K Sbjct: 359 IGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRCGQIKSGSPCRSERLCK 418 Query: 399 YNQLIRIEESLGKQAKFAGRS 419 YNQL+RIEESLG +AG S Sbjct: 419 YNQLMRIEESLGADCVYAGES 439 >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A Length = 431 Score = 524 bits (1352), Expect = e-149 Identities = 247/425 (58%), Positives = 308/425 (72%), Gaps = 6/425 (1%) Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61 I II RE+IDSRG+PT+E +V LE G G A PSGASTG EA ELRD +K R+ GKG Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62 Query: 62 VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121 V KA+A VN I AL+G DA+DQ IDKIMIDLDGT NKS+ GANAIL VSLA +K Sbjct: 63 VTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKXXX 122 Query: 122 QTSNLPLYKYLGGC----SAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAI 177 +PLY+++ + +PVP+MNI+NGG HADN +D QEFMI PVGA+ ++EAI Sbjct: 123 XXKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAI 182 Query: 178 RMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLI 237 RMG+EVFH L K LK+KG +T VGDEGG++PNL + AL +IA +++ AGY GKD+ + Sbjct: 183 RMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITL 242 Query: 238 ALDCAASAFFKKEKYILKG-ENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKI 296 A+DCAAS F+K KY+L G N E +L L QYPI SIEDG+ E DW G+ Sbjct: 243 AMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAY 302 Query: 297 LTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAG 356 T +G QLVGDDLFVTN + L +GI + +AN+ILIK NQIGS++ETL I+ A+ AG Sbjct: 303 QTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAG 362 Query: 357 YPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFA 416 Y ++ISHRSGETED TIADLAV T GQIKTGS++RSDR+AKYNQLIRIEE+LG++A + Sbjct: 363 YTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYN 422 Query: 417 GRSIL 421 GR + Sbjct: 423 GRKEI 427 >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A Length = 444 Score = 509 bits (1311), Expect = e-145 Identities = 243/424 (57%), Positives = 307/424 (72%), Gaps = 7/424 (1%) Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61 I D+ AREV+DSRG+PT+EV+V E G+ GR MVPSGASTG HEA ELRD +K RY G G Sbjct: 14 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 73 Query: 62 VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121 KA+ VN+ I A++G D RDQ ID+ MI LDGTPNK +LGANAILGVS+AV++AAA Sbjct: 74 TQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAA 133 Query: 122 QTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGA 181 +PLY YLGG + +LP P+MNI+NGG H+D + FQEFMI+PVGA +EA+R GA Sbjct: 134 DYLEIPLYSYLGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGA 193 Query: 182 EVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDC 241 E+FH LKK LKS+G T VGDEGGF+P + + ++ I +IE AGY GKD+ + DC Sbjct: 194 EIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDC 253 Query: 242 AASAFFKKEKYILKGENLE------LQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWK 295 A+S F+ KE+ + E E YL LV++YPI +IEDGM E+DW GWK Sbjct: 254 ASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWK 313 Query: 296 ILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMA 355 LT ++G QLVGDD FVTN + L +GI E AN+ILIK NQIG+++ET IE A+ A Sbjct: 314 ALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEA 373 Query: 356 GYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKF 415 GY +++SHRSGETED TIAD+AVATN GQIKTGSL+R+DRIAKYNQL+RIE+ LG+ A++ Sbjct: 374 GYTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEY 433 Query: 416 AGRS 419 G Sbjct: 434 RGLK 437 >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural genomics, NPPSFA; 1.85A {Methanocaldococcus jannaschii} Length = 427 Score = 489 bits (1261), Expect = e-139 Identities = 247/421 (58%), Positives = 314/421 (74%), Gaps = 9/421 (2%) Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60 I DI+AREVIDSRG+PT+EV+V + G A+VPSGASTG HEA ELRD+EKR+ GK Sbjct: 9 FEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGK 68 Query: 61 GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120 GVL A+ VN IR +LG DAR Q ID IMI+LDGTPNKSRLGANAIL VSLAV+KAA Sbjct: 69 GVLMAVENVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAA 128 Query: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180 A T+ +PLYKYLGG +++++PVP+MN++NGG HA N LD QEFMIMPVGA +I EA+RMG Sbjct: 129 AATAKIPLYKYLGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSISEAVRMG 188 Query: 181 AEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIA 238 +EV+H LK + K + NVGDEGGF+P LKT+ ALDL+ S++KAGY +++ A Sbjct: 189 SEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGY--EDEVVFA 246 Query: 239 LDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILT 298 LD AAS F+K Y ++G+ L E+ Y LVD+YPI SIED E+D+ G+ ++T Sbjct: 247 LDAAASEFYKDGYYYVEGKK--LTREELLDYYKALVDEYPIVSIEDPFHEEDFEGFAMIT 304 Query: 299 NKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYP 358 ++ Q+VGDDLFVTN ERL KGI + ANA+L+K NQIG++SE ++ + A GY Sbjct: 305 KELD--IQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYG 362 Query: 359 SIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGR 418 ++SHRSGETED TIADL+VA N GQIKTG+ AR +R AKYNQLIRIE+ LG +K+AGR Sbjct: 363 VVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQLIRIEQELGL-SKYAGR 421 Query: 419 S 419 + Sbjct: 422 N 422 >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* Length = 436 Score = 483 bits (1244), Expect = e-137 Identities = 216/433 (49%), Positives = 290/433 (66%), Gaps = 21/433 (4%) Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61 ++ + AR V DSRG+PT+EV++ E G R++VPSGASTG+HEA E+RD +K ++ GKG Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGV-FRSIVPSGASTGVHEALEMRDGDKSKWMGKG 60 Query: 62 VLKAIAFVNDEIRTALL--GCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119 VL A+ VND I A + D +DQ +D +I LDGT NKS+LGANAILGVSLA S+A Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRA 120 Query: 120 AAQTSNLPLYKYLGG-----CSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIR 174 AA N+PLYK+L S ++LPVP +N+LNGG HA AL QEFMI P GA+ Sbjct: 121 AAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFA 180 Query: 175 EAIRMGAEVFHTLKKELKSKG--YSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAG 232 EA+R+G+EV+H LK K + + NVGDEGG +PN++TA+ ALDLI ++I+ AG++ Sbjct: 181 EALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHD-- 238 Query: 233 KDLLIALDCAASAFFKKEKYILKGENLE------LQPNEMASYLANLVDQYPIYSIEDGM 286 + I LDCA+S FFK KY L +N L ++A +L+ +YPI SIED Sbjct: 239 GKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 Query: 287 SEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETL 346 +EDDW W G Q+V DDL VTNP+R+ I ++ A+A+L+K NQIG++SE++ Sbjct: 299 AEDDWEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESI 356 Query: 347 NTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIE 406 + + AG+ ++SHRSGETED IADL V GQIKTG+ ARS+R+AK NQL+RIE Sbjct: 357 KAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIE 416 Query: 407 ESLGKQAKFAGRS 419 E LG A FAG + Sbjct: 417 EELGDNAVFAGEN 429 >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 1pdz_A 1pdy_A Length = 439 Score = 479 bits (1235), Expect = e-136 Identities = 220/430 (51%), Positives = 291/430 (67%), Gaps = 18/430 (4%) Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61 I I ARE++DSRG+PT+EVD+ G RA VPSGASTGI+EA ELRD +K RY GKG Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKG 60 Query: 62 VLKAIAFVNDEIRTALL--GCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119 VLKA+ +N I AL+ G +Q +D +M++LDGT NKS+ GANAILGVSLAV KA Sbjct: 61 VLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKA 120 Query: 120 AAQTSNLPLYKY---LGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA 176 A LPLY++ L G S ILPVP N++NGG HA N L QEFMI+PVGAE+ R+A Sbjct: 121 GAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDA 180 Query: 177 IRMGAEVFHTLKKELKSKGY--STNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKD 234 +R+GAEV+HTLK +K K +TNVGDEGGF+PN+ AL+L+ +I+KAGY + Sbjct: 181 MRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYT--EK 238 Query: 235 LLIALDCAASAFFKKEKYILKG-----ENLELQPNEMASYLANLVDQYPIYSIEDGMSED 289 ++I +D AAS F++ KY L + + +++ + + V YP+ SIED +D Sbjct: 239 IVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQD 298 Query: 290 DWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTI 349 DW W T +G Q+VGDDL VTNP+R+ + + E+ N +L+K NQIGSV+E + Sbjct: 299 DWAAWSKFTANVG--IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQAC 356 Query: 350 EKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESL 409 + AQ G+ ++SHRSGETED IADL V GQIKTG+ RS+R+AKYNQL+RIEE L Sbjct: 357 KLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEEL 416 Query: 410 GKQAKFAGRS 419 G +A+FAG + Sbjct: 417 GDEARFAGHN 426 >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A Length = 432 Score = 463 bits (1193), Expect = e-131 Identities = 196/427 (45%), Positives = 269/427 (62%), Gaps = 10/427 (2%) Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59 M I + REV+DSRG+PT+EV+V E G R+ VPSGASTG++EA ELRD +K RY G Sbjct: 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKGV-FRSAVPSGASTGVYEACELRDGDKKRYVG 62 Query: 60 KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119 KG L+A+ VN+ I AL+G D Q +D +M+ LDGTPNK +LGANAILG S+A+SK Sbjct: 63 KGCLQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKX 122 Query: 120 AAQTSNLPLYKY---LGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA 176 +PLY+Y L G LPVP N++NGG HA NAL FQEFMI PV A + EA Sbjct: 123 XXXXKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEA 182 Query: 177 IRMGAEVFHTLKKELKSKGY--STNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKD 234 +RMG+EV+H+L+ +K K + NVGDEGGF+P +K + L ++ +IE+AG+ Sbjct: 183 LRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFA 242 Query: 235 LLIALDCAASAFFKKEKYILKGENL---ELQPNEMASYLANLVDQYPIYSIEDGMSEDDW 291 + + + + KK++Y L ++ + ++ YPI SIED +DD+ Sbjct: 243 ICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDF 302 Query: 292 HGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEK 351 G+ +T + Q+VGDDL VTN ER+ I ++ N++L+K NQIG++SE + + + Sbjct: 303 AGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKL 362 Query: 352 AQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGK 411 G+ ++SHRSGETED IADL VA GQIKTG+ R +R AK NQL+RIEE LG Sbjct: 363 CMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGA 422 Query: 412 QAKFAGR 418 AKF Sbjct: 423 HAKFGFP 429 >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* Length = 413 Score = 252 bits (646), Expect = 8e-68 Identities = 70/415 (16%), Positives = 133/415 (32%), Gaps = 69/415 (16%) Query: 15 RGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIR 74 + +I V + LEDG G A + R I + EI Sbjct: 48 QKGESISVLLVLEDGQVAH---------GDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIA 98 Query: 75 TALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAI-LGVSLAVSKAAAQTSNLPLYKYLG 133 L+G + + + + D AI G++ A+ A A+T + + + + Sbjct: 99 PKLIGREITN---FKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIR 155 Query: 134 ---GCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVF-HTLKK 189 A I VP+ G + +D + I A+V H L Sbjct: 156 DEYNPGAEINAVPVF--AQSGDDRYDNVD---------------KMIIKEADVLPHALIN 198 Query: 190 ELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKK 249 ++ K +G +G + + + + I K + +D Sbjct: 199 NVEEK-----LGLKG------EKLLEYVKWLRDRIIKLRVREDYAPIFHIDV-------- 239 Query: 250 EKYILKGENLELQPNEMASYLANLVDQYPIY--SIEDGMSEDDWHGWKILTNKI------ 301 Y G ++ MA Y+ L + + IE M +D + Sbjct: 240 --YGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDG 297 Query: 302 -GSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360 G + +LV D+ T E + + + + + IK +G V+ + I + G + Sbjct: 298 RGVDAELVADEWCNT-VEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAY 356 Query: 361 ISHRSGETEDHTIA--DLAVATNCGQI--KTGSLARSDRIAKYNQLIRIEESLGK 411 ET ++ +A Q+ K G + N++ R+ +G+ Sbjct: 357 CGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGR 411 >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 Score = 244 bits (625), Expect = 2e-65 Identities = 68/414 (16%), Positives = 128/414 (30%), Gaps = 67/414 (16%) Query: 15 RGSPTIEVDVCLEDGSTGR---AMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVND 71 + + V + LE+G+ A V + G F I F+ND Sbjct: 48 QAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEH------------FIPFLND 95 Query: 72 EIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAI-LGVSLAVSKAAAQTSNLPLYK 130 I+ L G D D L A+ G+S A+ A A S + Sbjct: 96 HIKPLLEGRDVDA---FLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTE 152 Query: 131 YLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKE 190 + LP I G D+ + MI+ + + H L Sbjct: 153 VVCD--EWQLPCVPEAIPLFGQSGDDRYIAVDKMIL-----------KGVDVLPHALINN 199 Query: 191 LKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKE 250 ++ K +G +G + +++ I + + +D Sbjct: 200 VEEK-----LGFKGEK------LREYVRWLSDRILSLRSSPRYHPTLHIDV--------- 239 Query: 251 KYILKGENLELQPNEMASYLANLVDQYPIY--SIEDGM----SEDDWHGWKILTNKI--- 301 Y G ++ P A Y+A+L + IE + D +T ++ Sbjct: 240 -YGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRL 298 Query: 302 GSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361 GS ++V D+ + + + + + + IK +G + ++ + G + Sbjct: 299 GSGVKIVADE-WCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQ 357 Query: 362 SHRSGETEDHTIAD--LAVATNCGQI--KTGSLARSDRIAKYNQLIRIEESLGK 411 ETE +A+A ++ K G +N++ R L Sbjct: 358 GGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQT 411 >1ec7_A Glucarate dehydratase; lyase; 1.90A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 1jct_A* 1bqg_A Length = 446 Score = 109 bits (274), Expect = 9e-25 Identities = 38/361 (10%), Positives = 96/361 (26%), Gaps = 55/361 (15%) Query: 41 STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88 +G H F ++D G+ + K + ++ ++G + + Sbjct: 28 LSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTL----EDAIPLVVGKTLGEYKNV 83 Query: 89 DKIMIDLDGTPNKSRLGA---------NAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139 ++ + + G + + G+ A+ Q + + LG Sbjct: 84 LTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRS 143 Query: 140 LPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGA-EVFHTLKKELKSKGYST 198 L + G L +Q +R M V + + G++ Sbjct: 144 EVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFND 203 Query: 199 NVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGEN 258 G + + + I A I LD + Sbjct: 204 FKLKGGVLAG-----EEEAESIV-----ALAQRFPQARITLDPNGAWSL----------- 242 Query: 259 LELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPE 318 A + + Y+ + +E + G +++ + ++ T+ Sbjct: 243 ------NEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWR 296 Query: 319 RLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAV 378 ++ + + I + ++ ++ + G SH + + V Sbjct: 297 QMGHTL-SLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLT-WGSHSNNHFDISLAMFTHV 354 Query: 379 A 379 A Sbjct: 355 A 355 >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A Length = 450 Score = 57.4 bits (138), Expect = 5e-09 Identities = 47/362 (12%), Positives = 96/362 (26%), Gaps = 56/362 (15%) Query: 41 STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88 +G HE + L D+ +G+L + ++ R+ + G + + Sbjct: 25 LSGGHEPWFIRCVLVLEDESGNRGVGEIPSSEGILNGL----EKCRSLVEGARVNEVKQV 80 Query: 89 DKIMIDLDGTPNKSRLG---------ANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139 L G + I + A+ Q +P+ LG Sbjct: 81 LSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQR 140 Query: 140 LPVPLMNILNGGIHAD-NALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSK-GYS 197 V + L D L + + +R M E L + + G+ Sbjct: 141 DEVEALGYLFLLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFK 200 Query: 198 TNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGE 257 G + D I +A + A + +ALD + Sbjct: 201 DFKLKGGVLRG-----EEEADCI-----RALHEAFPEARLALDPNGAWKL---------- 240 Query: 258 NLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNP 317 + A + + Y+ + E + G + + ++ T+ Sbjct: 241 -------DEAVRVLEPIKHLLSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIATDY 293 Query: 318 ERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLA 377 ++L + + L + + E G SH + + Sbjct: 294 KQLQYAVQLNSVDIPLADCHFWTM-QGAVAVGELCNEWGMT-WGSHSNNHFDISLAMMTH 351 Query: 378 VA 379 VA Sbjct: 352 VA 353 >3n6h_A Mandelate racemase/muconate lactonizing protein; structural genomics, protein structure initiative; 2.30A {Actinobacillus succinogenes} PDB: 3n6j_A Length = 455 Score = 51.6 bits (123), Expect = 3e-07 Identities = 47/360 (13%), Positives = 93/360 (25%), Gaps = 53/360 (14%) Query: 41 STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88 G H + L D G + A+ E ++G I Sbjct: 29 VGGAHSPYFTRNIVILTDNSGHTGVGEAPGGATIENALT----EAIPHVVGRPISILNKI 84 Query: 89 DKIMIDLDGTPNKSRLG---------ANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139 M + + G NA+ + A+ Q +P+ + LG Sbjct: 85 VNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRD 144 Query: 140 LPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYSTN 199 V ++ + D D + E + + ++ SK Sbjct: 145 -EVTVLGY-LFYVGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASK----- 197 Query: 200 VGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGENL 259 D GF + K K G G + + F + I N Sbjct: 198 --DRYGFK-DFKL-------------KGGVFEGSKEIDTVIELKKHF--PDARITLDPNG 239 Query: 260 ELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPER 319 +E A L ++ Y+ + + E+ + G +I+ ++ TN Sbjct: 240 CWSLDE-AIQLCKGLNDVLTYAEDPCIGENGYSGREIMAEFRRRTGIPTATNMIATNWRE 298 Query: 320 LHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVA 379 + + I + +++ + G H + + V Sbjct: 299 MCH-AIMLQSVDIPLADPHFWTLTGASRVAQLCNEWGLT-WGCHSNNHFDISLAMFSHVG 356 >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A Length = 455 Score = 49.8 bits (118), Expect = 1e-06 Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 64/311 (20%) Query: 65 AIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTS 124 A V+ L+G D R+ L+ + M + L I + LA+ + Sbjct: 89 ACWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLPIAVISVIDLALWDLLGKVR 148 Query: 125 NLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEF-MIMPVGAENIREAIRMGAEV 183 N P+Y+ +GG + L A A+ F + +P ++ E +R E Sbjct: 149 NEPVYRLIGGATKERLD---FYCTGPEPTAAKAMGFWGGKVPLPFCPDDGHEGLRKNVEF 205 Query: 184 FHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAA 243 + K G D I +DC Sbjct: 206 ----------------------------------------LRKHREAVGPDFPIMVDCYM 225 Query: 244 SAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGS 303 S L I E+ +S DD G+ ++ + Sbjct: 226 SLNV-----------------SYTIELVKACLDLNINWWEECLSPDDTDGFALIKRAHPT 268 Query: 304 NCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISH 363 G+ + + K + + I +G ++E L A P ++ H Sbjct: 269 VKFTTGEHEY--SRYGFRKLVEGRNLDIIQPDVMWLGGLTELLKVAALAAAYDVP-VVPH 325 Query: 364 RSGETEDHTIA 374 SG H Sbjct: 326 ASGPYSYHFQI 336 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.0 bits (114), Expect = 4e-06 Identities = 72/481 (14%), Positives = 127/481 (26%), Gaps = 215/481 (44%) Query: 4 NDII-----AREVIDSRGSPTIEVDVCLEDGSTGRA---MVPSGASTGIHEAF-ELRDQE 54 ++I AR + G A + G + F ELRD Sbjct: 120 KELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLVAIFGGQGN-TDDYFEELRDLY 177 Query: 55 KRYFGKGVLKAIAFVNDEIRTA--LLGCDARDQLLIDKIM---IDL-------DGTPNKS 102 + Y V D I+ + L R L +K+ +++ TP+K Sbjct: 178 QTYHV--------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229 Query: 103 RLGANAILGVSLAVSKAAAQTSNLPL--------Y----KYLGGCSAHILPVPLMNILNG 150 L +S+ +S PL Y K LG + P L + L G Sbjct: 230 YL-------LSIPIS--------CPLIGVIQLAHYVVTAKLLG-FT----PGELRSYLKG 269 Query: 151 ------GI-------HADNALDFQEFMIMPVGAENIREAIRM----GAEVFHTL-KKELK 192 G+ D ++ F ++R+AI + G + L Sbjct: 270 ATGHSQGLVTAVAIAETD---SWESFF------VSVRKAITVLFFIGVRCYEAYPNTSLP 320 Query: 193 SKGYSTNV-GDEGGFSPNLKTADSALDLIANSIEKAGYNA----GKDLLIALDCAASAF- 246 ++ +EG SP L ++ + + + + K N+ GK + I+L A Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLV 378 Query: 247 ------------------------------FKKEK-----------------YI------ 253 F + K + Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438 Query: 254 ----LKGENLELQPNEMASYLANLVDQYPIYSIEDG-----MSED--------------D 290 L N+ ++ P+Y DG +S Sbjct: 439 INKDLVKNNVSFNAKDIQ---------IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489 Query: 291 W---------H----------GWKILTNKI--GSNCQ--LVGDDLFVTNPERLHKGINEE 327 W H G +LT++ G+ + + G L +++ Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT---------LDINPDDD 540 Query: 328 V 328 Sbjct: 541 Y 541 Score = 46.9 bits (111), Expect = 9e-06 Identities = 79/466 (16%), Positives = 139/466 (29%), Gaps = 163/466 (34%) Query: 45 HEAFELRDQEKRYFGKGVLKAI--AFVNDEIRTALLGCDARDQLLIDKIMIDLDGT-PNK 101 + + + + F + VL F E L G D L K++ + D T Sbjct: 67 YVSSLVEPSKVGQFDQ-VLNLCLTEF---E-NCYLEGNDI--HALAAKLLQENDTTLVKT 119 Query: 102 SRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNG-GIHADNALD- 159 L N I +A ++++ L++ + L+ I G G N D Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSA-LFR-----AVGEGNAQLVAIFGGQG----NTDDY 169 Query: 160 FQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDL 219 F+E +++ T Y VGD +K + L Sbjct: 170 FEEL-----------------RDLYQT---------YHVLVGD---L---IKFSAETLSE 197 Query: 220 IANSIEKAG--YNAGKDLLIAL-------DCA--ASA--------FFKKEKYILKGENLE 260 + + A + G ++L L D S + Y++ + L Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257 Query: 261 LQPNEMASYLANLVDQYPIYSIEDGMSE-----------DDWHGWKILTNK-------IG 302 P E+ SYL G S+ D W + + K IG Sbjct: 258 FTPGELRSYLKGAT----------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307 Query: 303 SNCQ-----------LVGDD-----------LFVTNPER--LHKGINEEVANAILIKPNQ 338 C ++ D L ++N + + +N+ N+ L Q Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK--TNSHLPAGKQ 365 Query: 339 IGSVSETL-NTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLAR---SD 394 + +S L N + ++G P S + T+ + Q +R S+ Sbjct: 366 V-EIS--LVNGAKNLVVSGPPQ--SLYG---LNLTLRKAKAPSGLDQ------SRIPFSE 411 Query: 395 RIAKY-NQLI----------------RIEESLGKQ-AKFAGRSILI 422 R K+ N+ + I + L K F + I I Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457 >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 Score = 47.0 bits (111), Expect = 8e-06 Identities = 49/356 (13%), Positives = 81/356 (22%), Gaps = 85/356 (23%) Query: 7 IAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI 66 + + R P + V+V DG+ G V E Sbjct: 30 TSFGTMHDR--PAVLVEVEDSDGAVGWGEVWCNFPACGAEHRA----------------- 70 Query: 67 AFVNDEIRTALLGCDARDQL----LIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122 V + L D ++ L + A AI G+ +A+ AA+ Sbjct: 71 RLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAAR 130 Query: 123 TSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAE 182 + PL+ +LGG I + GI+ +N D R AE Sbjct: 131 RAGQPLWAWLGGSGDRI------GVYASGINPENPED---------------VVARKAAE 169 Query: 183 VFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCA 242 + K ++ D A D+ G + D Sbjct: 170 GYRAFKLKVG--------------------FDDARDVRN--ALHVRELLGAATPLMADA- 206 Query: 243 ASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIG 302 N L + E ++ W L Sbjct: 207 ---------------NQGWDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAELAQAAP 251 Query: 303 SNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYP 358 + + + + + G S L AG Sbjct: 252 ---MPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLR 304 >2hxt_A L-fuconate dehydratase; enolase superfamily, D- erythromohydroxamate, unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A Length = 441 Score = 45.8 bits (107), Expect = 2e-05 Identities = 51/325 (15%), Positives = 91/325 (28%), Gaps = 23/325 (7%) Query: 65 AIAFVNDEIRTALLGCDARD-QLLIDKIMIDLDGTPNKSRLGA------NAILGVSLAVS 117 + ++G + L LG AI V A Sbjct: 62 VQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAW 121 Query: 118 KAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAI 177 AA+ +N PL++++ + L + + P A I Sbjct: 122 DLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLI 181 Query: 178 RMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLI 237 G + T L GYS ++ A A+ +I+ +D + Sbjct: 182 EQGYPAYTTSPGWL---GYSDE--------KLVRLAKEAVADGFRTIKLKVGANVQDDIR 230 Query: 238 ALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKIL 297 A +A + + + ++ I IE+ S DD G + Sbjct: 231 RCRLARAAIGPDIAMAVDANQRWDVGPAIDWM--RQLAEFDIAWIEEPTSPDDVLGHAAI 288 Query: 298 TNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGY 357 I G+ + + + I I ++G V+E L + A G Sbjct: 289 RQGITPVPVSTGEHTQNRVVFKQL--LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGV 346 Query: 358 PSIISHRSGETEDHTIADLAVATNC 382 + H G + LA+A Sbjct: 347 R-VFPHAGGVGLCELVQHLAMADFV 370 >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A Length = 470 Score = 42.9 bits (100), Expect = 1e-04 Identities = 50/365 (13%), Positives = 93/365 (25%), Gaps = 41/365 (11%) Query: 22 VDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCD 81 V + G TG VP G GI +A L G+ + V IR AL G Sbjct: 41 VILKDNAGRTGVGEVPGGE--GIRQA--LERVIPLVVGQSIG-RTNGVLSSIRRALAGGG 95 Query: 82 ARDQLLIDKIMIDLD------GTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGC 135 + + N I V A+ Q +P+ + LG Sbjct: 96 NAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAG 155 Query: 136 SAH-ILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSK 194 P+ G + + EA A + + + Sbjct: 156 QQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERY 215 Query: 195 GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYIL 254 G++ G ++ I A + LD + Sbjct: 216 GFADFKLKGGVMPG-----AEEMEAI-----AAIKARFPHARVTLDPNGAWSLN------ 259 Query: 255 KGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFV 314 A L Y+ + E + G +++ + ++ Sbjct: 260 -----------EAIALCKGQGHLVAYAEDPCGPEAGYSGREVMAEFKRATGIPTATNMIA 308 Query: 315 TNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIA 374 T+ ++ + + L P+ + ++ + G SH + + Sbjct: 309 TDWRQMGHAVQLHAVDIPLADPHFWT-MQGSVRVAQLCDEWGLT-WGSHSNNHFDVSLAM 366 Query: 375 DLAVA 379 VA Sbjct: 367 FTHVA 371 >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Length = 359 Score = 38.4 bits (88), Expect = 0.004 Identities = 54/386 (13%), Positives = 115/386 (29%), Gaps = 93/386 (24%) Query: 1 MFINDIIAREV--------IDSRGS----PTIEVDVCLEDGSTGRAMVPSGASTGIHEAF 48 + I + R V + G+ P + +D+ G G + + + Sbjct: 4 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFA---------- 53 Query: 49 ELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANA 108 + LK++ + D++ ++ + ++ ++ + L A Sbjct: 54 ---------YTPVALKSLKQLLDDMAAMIVNEPL-APVSLEAMLAKRFCLAGYTGLIRMA 103 Query: 109 ILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPV 168 G+ +A A + PL K LG + + ++ + + A+ E V Sbjct: 104 AAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAV 163 Query: 169 GAENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAG 228 A+ V ++++ + Sbjct: 164 KTRIGYPALDQDLAVVRSIRQAV------------------------------------- 186 Query: 229 YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSE 288 G D I +D S A + + Q + IE+ + Sbjct: 187 ---GDDFGIMVDYNQS-----------------LDVPAAIKRSQALQQEGVTWIEEPTLQ 226 Query: 289 DDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNT 348 D+ G + + +K+ Q+ PE + K ++ + +IG V+ + Sbjct: 227 HDYEGHQRIQSKLNVPVQM---GENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRA 283 Query: 349 IEKAQMAGYPSIISHRSGETEDHTIA 374 AQ G P + SH E H +A Sbjct: 284 SALAQQFGIP-MSSHLFQEISAHLLA 308 >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} Length = 377 Score = 36.5 bits (83), Expect = 0.011 Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 6/135 (4%) Query: 7 IAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI 66 +R V+ S+ + + +D DG G+ V + + E +E + + Sbjct: 22 TSRGVLTSKPTWFVRLD---IDGHGGQGEVSLIPGLSL-DPEEQIGRELDLLARRLRAEE 77 Query: 67 AFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGAN--AILGVSLAVSKAAAQTS 124 + G D D + + + + S G + +A+ + Sbjct: 78 PIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGR 137 Query: 125 NLPLYKYLGGCSAHI 139 I Sbjct: 138 QEWFASDFTRGEKRI 152 >3n4f_A Mandelate racemase/muconate lactonizing protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MSE; 1.88A {Geobacillus SP} Length = 392 Score = 35.9 bits (82), Expect = 0.018 Identities = 38/293 (12%), Positives = 74/293 (25%), Gaps = 47/293 (16%) Query: 71 DEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYK 130 E ++G D + D G RL L + V Q P+Y Sbjct: 66 PEWAEDVIGRRLLD-------LFDDRG-----RLREAYRLQLEYPVLDWLGQRQGKPVYD 113 Query: 131 YLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKE 190 + G ++ + ++ D+ E + + E + G K Sbjct: 114 LVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKG---QRHFK-- 168 Query: 191 LKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKE 250 VG G P + + ++ E AG I +D + Sbjct: 169 -------IKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGK----IMIDANNAYNL--- 214 Query: 251 KYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGD 310 + + + +Y +E+ ED+ + ++ Sbjct: 215 --------------NLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIA 260 Query: 311 DLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISH 363 D L + + + G + + EK G H Sbjct: 261 DGEGLASPHLIEWATRGRVDVLQYDIIWPG-FTHWMELGEKLDAHGLR-SAPH 311 >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 Length = 324 Score = 34.5 bits (78), Expect = 0.043 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 8/118 (6%) Query: 265 EMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGI 324 E + L+ + +E + D + + + + D L Sbjct: 187 EGLAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLP-----ICADESCHTRSNLKALK 241 Query: 325 NEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNC 382 + IK ++ G ++E L +A+ G+ ++ T A L + Sbjct: 242 GR--YEMVNIKLDKTGGLTEALALATEARAQGFS-LMLGCMLCTSRAISAALPLVPQV 296 >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A Length = 375 Score = 31.5 bits (70), Expect = 0.37 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 23/142 (16%) Query: 6 IIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKA 65 + V + P + + +G G A A Y + + A Sbjct: 27 ETSFGVQTHKVVPLLILH---GEGVQGVAEGTMEARPM-------------YREETIAGA 70 Query: 66 IAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSN 125 + + A+LG + + + G A V +A A+T Sbjct: 71 LDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRM-------ARAMVEMAAWDLWARTLG 123 Query: 126 LPLYKYLGGCSAHILPVPLMNI 147 +PL LGG + + I Sbjct: 124 VPLGTLLGGHKEQVEVGVSLGI 145 >3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Length = 355 Score = 27.9 bits (60), Expect = 4.0 Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 110 LGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVG 169 LG ++ S AA S P + ++ + + + + + EF + G Sbjct: 230 LGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEG 289 Query: 170 AENIREAIRM 179 + +++ Sbjct: 290 QTIMARQLQI 299 >3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A Length = 303 Score = 27.5 bits (60), Expect = 5.2 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 22/136 (16%) Query: 171 ENIREAIRMGAEVFHTLKKELKS---KGYSTNVGDEGGFSPN---------LKTADSALD 218 ++ R A+R A L + L++ G GDEGG P+ + S +D Sbjct: 79 DDARVAVRGHARAQRNLLERLETELLGGTLDTAGDEGGIQPDPILQGLVDVIGQGKSDID 138 Query: 219 LIANSIEKAG--YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQ 276 A +E + + D++ L SA +N+++ ++ + + ++D Sbjct: 139 AYATIVEGLTKYFQSVADVMSKLQDYISAK--------DDKNMKIDGGKIKALIQQVIDH 190 Query: 277 YPIYSIEDGMSEDDWH 292 P + G W Sbjct: 191 LPTMQLPKGADIARWR 206 >2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein; polyamine binding, syphilis, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Length = 343 Score = 27.7 bits (60), Expect = 5.4 Identities = 11/68 (16%), Positives = 21/68 (30%) Query: 110 LGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVG 169 G + A + + + ++ A + V I G + D A F F + P Sbjct: 225 HGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEPAH 284 Query: 170 AENIREAI 177 + Sbjct: 285 YAEFLDTF 292 >1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Length = 325 Score = 27.3 bits (59), Expect = 6.4 Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 145 MNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180 + I + + AL F++ P A+ + E I Sbjct: 236 LAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYP 271 >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 Score = 27.4 bits (59), Expect = 6.8 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 6/69 (8%) Query: 229 YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLAN------LVDQYPIYSI 282 +N G ++ K + + + + A +A ++ P Y Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDT 363 Query: 283 EDGMSEDDW 291 + + E W Sbjct: 364 LEAIMETSW 372 >1rh2_A Interferon-alpha 2B; cytokine, anti-viral, immunomodulator, 4 helix bundle; 2.90A {Homo sapiens} SCOP: a.26.1.3 PDB: 1itf_A 2hym_B Length = 165 Score = 27.1 bits (60), Expect = 6.9 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%) Query: 167 PVGAENIREAIRMGAEVFHTLKKELKSKGYS 197 P+ E+ A+R F + LK K YS Sbjct: 109 PLMNEDSILAVRK---YFQRITLYLKEKKYS 136 >1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A Length = 253 Score = 27.4 bits (59), Expect = 7.2 Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 3/122 (2%) Query: 246 FFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNC 305 + + L P A+ + + +G + + Sbjct: 77 PDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDMLQALVANAGLTDSFDA 136 Query: 306 QLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRS 365 + D V P H V + + P ++ VS + A+ G+ R Sbjct: 137 VISVDAKRVFKP---HPDSYALVEEVLGVTPAEVLFVSSNGFDVGGAKNFGFSVARVARL 193 Query: 366 GE 367 + Sbjct: 194 SQ 195 >3czt_X Protein S100-B; EF-hand,calcium, zinc, copper, cytoplasm, metal- binding, nucleus, metal binding protein; 1.40A {Homo sapiens} PDB: 2h61_A 3d0y_A* 3d10_A* 1mq1_A 1uwo_A 2pru_A 1b4c_A 1dt7_A 1mwn_A 1qlk_A 1sym_A 1xyd_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 1psb_A ... Length = 92 Score = 27.0 bits (60), Expect = 9.1 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%) Query: 144 LMNILNGGIHADNALDFQEFMIM 166 +M L+ D DFQEFM Sbjct: 57 VMETLD--NDGDGECDFQEFMAF 77 >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Score = 26.7 bits (59), Expect = 9.3 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 313 FVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHT 372 F+ PE G E + IL+ +I ++ E L +E AG P +I + + E Sbjct: 203 FINKPE---TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII--AEDVEGEA 257 Query: 373 IADLAVATNCGQIK 386 +A L V T G +K Sbjct: 258 LATLVVNTMRGIVK 271 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.135 0.382 Gapped Lambda K H 0.267 0.0497 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,576,152 Number of extensions: 166829 Number of successful extensions: 664 Number of sequences better than 10.0: 1 Number of HSP's gapped: 608 Number of HSP's successfully gapped: 43 Length of query: 424 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 329 Effective length of database: 3,390,050 Effective search space: 1115326450 Effective search space used: 1115326450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.7 bits)