RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
         (424 letters)



>3otr_A Enolase; structural genomics, center for structural genomics of
           infec diseases, csgid, alpha-beta barrel, TIM barrel;
           2.75A {Toxoplasma gondii}
          Length = 452

 Score =  541 bits (1395), Expect = e-154
 Identities = 218/441 (49%), Positives = 288/441 (65%), Gaps = 25/441 (5%)

Query: 1   MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59
           + I DI+ARE++DSRG+PTIEVDV  E G   RA VPSGASTGI+EA ELRD++  RY G
Sbjct: 2   VVIKDIVAREILDSRGNPTIEVDVSTEGG-VFRAAVPSGASTGIYEALELRDKDPKRYLG 60

Query: 60  KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMID-LDGTPN-----KSRLGANAILGVS 113
           KGVL A+  V  EI+ ALLG D  DQ  ID +M++ LDGT N     KS+LGANAILGVS
Sbjct: 61  KGVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVS 120

Query: 114 LAVSKAAAQTSNLPLYKYLGGCSAH-----ILPVPLMNILNGGIHADNALDFQEFMIMPV 168
           +A  +A A +  LPLYKY+   +       ++PVP  N++NGG HA N L  QEF+I PV
Sbjct: 121 IACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPV 180

Query: 169 GAENIREAIRMGAEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEK 226
           GA NIREAIR G+E +H LK  +K+K    +TNVGDEGGF+PN+ TA+ AL+L+  +I+ 
Sbjct: 181 GAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKA 240

Query: 227 AGYNAGKDLLIALDCAASAFFKKE--KYILKGENLELQPN------EMASYLANLVDQYP 278
           AGY     + IA D AAS F+K++  KY L  +      +      ++       + +YP
Sbjct: 241 AGYEG--KIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP 298

Query: 279 IYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQ 338
           I S+ED   +DD+  +   T  +G   Q++GDD+ VTN  R+ K + ++  N +L+K NQ
Sbjct: 299 IISVEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQ 358

Query: 339 IGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAK 398
           IGSV+E +     AQ +G+   +SHRSGETED  IADL V   CGQIK+GS  RS+R+ K
Sbjct: 359 IGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRCGQIKSGSPCRSERLCK 418

Query: 399 YNQLIRIEESLGKQAKFAGRS 419
           YNQL+RIEESLG    +AG S
Sbjct: 419 YNQLMRIEESLGADCVYAGES 439


>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
           SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A
          Length = 431

 Score =  524 bits (1352), Expect = e-149
 Identities = 247/425 (58%), Positives = 308/425 (72%), Gaps = 6/425 (1%)

Query: 3   INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
           I  II RE+IDSRG+PT+E +V LE G  G A  PSGASTG  EA ELRD +K R+ GKG
Sbjct: 3   IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62

Query: 62  VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121
           V KA+A VN  I  AL+G DA+DQ  IDKIMIDLDGT NKS+ GANAIL VSLA +K   
Sbjct: 63  VTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKXXX 122

Query: 122 QTSNLPLYKYLGGC----SAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAI 177
               +PLY+++         + +PVP+MNI+NGG HADN +D QEFMI PVGA+ ++EAI
Sbjct: 123 XXKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAI 182

Query: 178 RMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLI 237
           RMG+EVFH L K LK+KG +T VGDEGG++PNL +   AL +IA +++ AGY  GKD+ +
Sbjct: 183 RMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITL 242

Query: 238 ALDCAASAFFKKEKYILKG-ENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKI 296
           A+DCAAS F+K  KY+L G  N      E   +L  L  QYPI SIEDG+ E DW G+  
Sbjct: 243 AMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAY 302

Query: 297 LTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAG 356
            T  +G   QLVGDDLFVTN + L +GI + +AN+ILIK NQIGS++ETL  I+ A+ AG
Sbjct: 303 QTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAG 362

Query: 357 YPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFA 416
           Y ++ISHRSGETED TIADLAV T  GQIKTGS++RSDR+AKYNQLIRIEE+LG++A + 
Sbjct: 363 YTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYN 422

Query: 417 GRSIL 421
           GR  +
Sbjct: 423 GRKEI 427


>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
           protein, glycolysis, phosphopyruvate hydratase, lyase;
           HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
           c.1.11.1 d.54.1.1 PDB: 1iyx_A
          Length = 444

 Score =  509 bits (1311), Expect = e-145
 Identities = 243/424 (57%), Positives = 307/424 (72%), Gaps = 7/424 (1%)

Query: 3   INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
           I D+ AREV+DSRG+PT+EV+V  E G+ GR MVPSGASTG HEA ELRD +K RY G G
Sbjct: 14  ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 73

Query: 62  VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121
             KA+  VN+ I  A++G D RDQ  ID+ MI LDGTPNK +LGANAILGVS+AV++AAA
Sbjct: 74  TQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAA 133

Query: 122 QTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGA 181
               +PLY YLGG +  +LP P+MNI+NGG H+D  + FQEFMI+PVGA   +EA+R GA
Sbjct: 134 DYLEIPLYSYLGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGA 193

Query: 182 EVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDC 241
           E+FH LKK LKS+G  T VGDEGGF+P  +  +  ++ I  +IE AGY  GKD+ +  DC
Sbjct: 194 EIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDC 253

Query: 242 AASAFFKKEKYILKGENLE------LQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWK 295
           A+S F+ KE+ +      E          E   YL  LV++YPI +IEDGM E+DW GWK
Sbjct: 254 ASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWK 313

Query: 296 ILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMA 355
            LT ++G   QLVGDD FVTN + L +GI E  AN+ILIK NQIG+++ET   IE A+ A
Sbjct: 314 ALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEA 373

Query: 356 GYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKF 415
           GY +++SHRSGETED TIAD+AVATN GQIKTGSL+R+DRIAKYNQL+RIE+ LG+ A++
Sbjct: 374 GYTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEY 433

Query: 416 AGRS 419
            G  
Sbjct: 434 RGLK 437


>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
           genomics, NPPSFA; 1.85A {Methanocaldococcus jannaschii}
          Length = 427

 Score =  489 bits (1261), Expect = e-139
 Identities = 247/421 (58%), Positives = 314/421 (74%), Gaps = 9/421 (2%)

Query: 1   MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60
             I DI+AREVIDSRG+PT+EV+V  +    G A+VPSGASTG HEA ELRD+EKR+ GK
Sbjct: 9   FEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGK 68

Query: 61  GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120
           GVL A+  VN  IR  +LG DAR Q  ID IMI+LDGTPNKSRLGANAIL VSLAV+KAA
Sbjct: 69  GVLMAVENVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAA 128

Query: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180
           A T+ +PLYKYLGG +++++PVP+MN++NGG HA N LD QEFMIMPVGA +I EA+RMG
Sbjct: 129 AATAKIPLYKYLGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSISEAVRMG 188

Query: 181 AEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIA 238
           +EV+H LK  +  K    + NVGDEGGF+P LKT+  ALDL+  S++KAGY    +++ A
Sbjct: 189 SEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGY--EDEVVFA 246

Query: 239 LDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILT 298
           LD AAS F+K   Y ++G+   L   E+  Y   LVD+YPI SIED   E+D+ G+ ++T
Sbjct: 247 LDAAASEFYKDGYYYVEGKK--LTREELLDYYKALVDEYPIVSIEDPFHEEDFEGFAMIT 304

Query: 299 NKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYP 358
            ++    Q+VGDDLFVTN ERL KGI  + ANA+L+K NQIG++SE ++  + A   GY 
Sbjct: 305 KELD--IQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYG 362

Query: 359 SIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGR 418
            ++SHRSGETED TIADL+VA N GQIKTG+ AR +R AKYNQLIRIE+ LG  +K+AGR
Sbjct: 363 VVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQLIRIEQELGL-SKYAGR 421

Query: 419 S 419
           +
Sbjct: 422 N 422


>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
           {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
           1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
           4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
           2al2_A* 2al2_B*
          Length = 436

 Score =  483 bits (1244), Expect = e-137
 Identities = 216/433 (49%), Positives = 290/433 (66%), Gaps = 21/433 (4%)

Query: 3   INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
           ++ + AR V DSRG+PT+EV++  E G   R++VPSGASTG+HEA E+RD +K ++ GKG
Sbjct: 2   VSKVYARSVYDSRGNPTVEVELTTEKGV-FRSIVPSGASTGVHEALEMRDGDKSKWMGKG 60

Query: 62  VLKAIAFVNDEIRTALL--GCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119
           VL A+  VND I  A +    D +DQ  +D  +I LDGT NKS+LGANAILGVSLA S+A
Sbjct: 61  VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRA 120

Query: 120 AAQTSNLPLYKYLGG-----CSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIR 174
           AA   N+PLYK+L        S ++LPVP +N+LNGG HA  AL  QEFMI P GA+   
Sbjct: 121 AAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFA 180

Query: 175 EAIRMGAEVFHTLKKELKSKG--YSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAG 232
           EA+R+G+EV+H LK   K +    + NVGDEGG +PN++TA+ ALDLI ++I+ AG++  
Sbjct: 181 EALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHD-- 238

Query: 233 KDLLIALDCAASAFFKKEKYILKGENLE------LQPNEMASYLANLVDQYPIYSIEDGM 286
             + I LDCA+S FFK  KY L  +N        L   ++A    +L+ +YPI SIED  
Sbjct: 239 GKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298

Query: 287 SEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETL 346
           +EDDW  W       G   Q+V DDL VTNP+R+   I ++ A+A+L+K NQIG++SE++
Sbjct: 299 AEDDWEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESI 356

Query: 347 NTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIE 406
              + +  AG+  ++SHRSGETED  IADL V    GQIKTG+ ARS+R+AK NQL+RIE
Sbjct: 357 KAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIE 416

Query: 407 ESLGKQAKFAGRS 419
           E LG  A FAG +
Sbjct: 417 EELGDNAVFAGEN 429


>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
           glycolysis, , isothermal titration calorimetry, lyase;
           1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
           1te6_A 2psn_A 3b97_A 1pdz_A 1pdy_A
          Length = 439

 Score =  479 bits (1235), Expect = e-136
 Identities = 220/430 (51%), Positives = 291/430 (67%), Gaps = 18/430 (4%)

Query: 3   INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
           I  I ARE++DSRG+PT+EVD+    G   RA VPSGASTGI+EA ELRD +K RY GKG
Sbjct: 2   IEKIWAREILDSRGNPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKG 60

Query: 62  VLKAIAFVNDEIRTALL--GCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119
           VLKA+  +N  I  AL+  G    +Q  +D +M++LDGT NKS+ GANAILGVSLAV KA
Sbjct: 61  VLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKA 120

Query: 120 AAQTSNLPLYKY---LGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA 176
            A    LPLY++   L G S  ILPVP  N++NGG HA N L  QEFMI+PVGAE+ R+A
Sbjct: 121 GAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDA 180

Query: 177 IRMGAEVFHTLKKELKSKGY--STNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKD 234
           +R+GAEV+HTLK  +K K    +TNVGDEGGF+PN+     AL+L+  +I+KAGY   + 
Sbjct: 181 MRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYT--EK 238

Query: 235 LLIALDCAASAFFKKEKYILKG-----ENLELQPNEMASYLANLVDQYPIYSIEDGMSED 289
           ++I +D AAS F++  KY L        +  +  +++ +   + V  YP+ SIED   +D
Sbjct: 239 IVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQD 298

Query: 290 DWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTI 349
           DW  W   T  +G   Q+VGDDL VTNP+R+ + + E+  N +L+K NQIGSV+E +   
Sbjct: 299 DWAAWSKFTANVG--IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQAC 356

Query: 350 EKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESL 409
           + AQ  G+  ++SHRSGETED  IADL V    GQIKTG+  RS+R+AKYNQL+RIEE L
Sbjct: 357 KLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEEL 416

Query: 410 GKQAKFAGRS 419
           G +A+FAG +
Sbjct: 417 GDEARFAGHN 426


>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
           SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
           2pu0_A 2pu1_A* 1oep_A
          Length = 432

 Score =  463 bits (1193), Expect = e-131
 Identities = 196/427 (45%), Positives = 269/427 (62%), Gaps = 10/427 (2%)

Query: 1   MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59
           M I  +  REV+DSRG+PT+EV+V  E G   R+ VPSGASTG++EA ELRD +K RY G
Sbjct: 4   MTIQKVHGREVLDSRGNPTVEVEVTTEKGV-FRSAVPSGASTGVYEACELRDGDKKRYVG 62

Query: 60  KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119
           KG L+A+  VN+ I  AL+G D   Q  +D +M+ LDGTPNK +LGANAILG S+A+SK 
Sbjct: 63  KGCLQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKX 122

Query: 120 AAQTSNLPLYKY---LGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA 176
                 +PLY+Y   L G     LPVP  N++NGG HA NAL FQEFMI PV A +  EA
Sbjct: 123 XXXXKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEA 182

Query: 177 IRMGAEVFHTLKKELKSKGY--STNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKD 234
           +RMG+EV+H+L+  +K K    + NVGDEGGF+P +K  +  L ++  +IE+AG+     
Sbjct: 183 LRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFA 242

Query: 235 LLIALDCAASAFFKKEKYILKGENL---ELQPNEMASYLANLVDQYPIYSIEDGMSEDDW 291
           + +    + +   KK++Y L  ++     +   ++          YPI SIED   +DD+
Sbjct: 243 ICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDF 302

Query: 292 HGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEK 351
            G+  +T  +    Q+VGDDL VTN ER+   I ++  N++L+K NQIG++SE + + + 
Sbjct: 303 AGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKL 362

Query: 352 AQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGK 411
               G+  ++SHRSGETED  IADL VA   GQIKTG+  R +R AK NQL+RIEE LG 
Sbjct: 363 CMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGA 422

Query: 412 QAKFAGR 418
            AKF   
Sbjct: 423 HAKFGFP 429


>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
           {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
           1kd0_A*
          Length = 413

 Score =  252 bits (646), Expect = 8e-68
 Identities = 70/415 (16%), Positives = 133/415 (32%), Gaps = 69/415 (16%)

Query: 15  RGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIR 74
           +   +I V + LEDG             G   A +      R         I  +  EI 
Sbjct: 48  QKGESISVLLVLEDGQVAH---------GDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIA 98

Query: 75  TALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAI-LGVSLAVSKAAAQTSNLPLYKYLG 133
             L+G +  +      +  + D           AI  G++ A+  A A+T  + + + + 
Sbjct: 99  PKLIGREITN---FKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIR 155

Query: 134 ---GCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVF-HTLKK 189
                 A I  VP+      G    + +D               + I   A+V  H L  
Sbjct: 156 DEYNPGAEINAVPVF--AQSGDDRYDNVD---------------KMIIKEADVLPHALIN 198

Query: 190 ELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKK 249
            ++ K     +G +G      +     +  + + I K         +  +D         
Sbjct: 199 NVEEK-----LGLKG------EKLLEYVKWLRDRIIKLRVREDYAPIFHIDV-------- 239

Query: 250 EKYILKGENLELQPNEMASYLANLVDQYPIY--SIEDGMSEDDWHGWKILTNKI------ 301
             Y   G   ++    MA Y+  L +    +   IE  M  +D          +      
Sbjct: 240 --YGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDG 297

Query: 302 -GSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360
            G + +LV D+   T  E +    + +  + + IK   +G V+   + I   +  G  + 
Sbjct: 298 RGVDAELVADEWCNT-VEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAY 356

Query: 361 ISHRSGETEDHTIA--DLAVATNCGQI--KTGSLARSDRIAKYNQLIRIEESLGK 411
                 ET        ++ +A    Q+  K G       +   N++ R+   +G+
Sbjct: 357 CGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGR 411


>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
           1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
           PDB: 1kkr_A*
          Length = 413

 Score =  244 bits (625), Expect = 2e-65
 Identities = 68/414 (16%), Positives = 128/414 (30%), Gaps = 67/414 (16%)

Query: 15  RGSPTIEVDVCLEDGSTGR---AMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVND 71
           +    + V + LE+G+      A V    + G    F                 I F+ND
Sbjct: 48  QAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEH------------FIPFLND 95

Query: 72  EIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAI-LGVSLAVSKAAAQTSNLPLYK 130
            I+  L G D              D       L   A+  G+S A+  A A  S     +
Sbjct: 96  HIKPLLEGRDVDA---FLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTE 152

Query: 131 YLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKE 190
            +       LP     I   G   D+     + MI+           +    + H L   
Sbjct: 153 VVCD--EWQLPCVPEAIPLFGQSGDDRYIAVDKMIL-----------KGVDVLPHALINN 199

Query: 191 LKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKE 250
           ++ K     +G +G            +  +++ I     +      + +D          
Sbjct: 200 VEEK-----LGFKGEK------LREYVRWLSDRILSLRSSPRYHPTLHIDV--------- 239

Query: 251 KYILKGENLELQPNEMASYLANLVDQYPIY--SIEDGM----SEDDWHGWKILTNKI--- 301
            Y   G   ++ P   A Y+A+L  +       IE  +      D       +T ++   
Sbjct: 240 -YGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRL 298

Query: 302 GSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361
           GS  ++V D+ +    + +    +    + + IK   +G +   ++ +      G  +  
Sbjct: 299 GSGVKIVADE-WCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQ 357

Query: 362 SHRSGETEDHTIAD--LAVATNCGQI--KTGSLARSDRIAKYNQLIRIEESLGK 411
                ETE        +A+A    ++  K G          +N++ R    L  
Sbjct: 358 GGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQT 411


>1ec7_A Glucarate dehydratase; lyase; 1.90A {Escherichia coli} SCOP:
           c.1.11.2 d.54.1.1 PDB: 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A*
           1jct_A* 1bqg_A
          Length = 446

 Score =  109 bits (274), Expect = 9e-25
 Identities = 38/361 (10%), Positives = 96/361 (26%), Gaps = 55/361 (15%)

Query: 41  STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88
            +G H  F       ++D            G+ + K +    ++    ++G    +   +
Sbjct: 28  LSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTL----EDAIPLVVGKTLGEYKNV 83

Query: 89  DKIMIDLDGTPNKSRLGA---------NAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139
             ++ +     +    G          + + G+  A+     Q   + +   LG      
Sbjct: 84  LTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRS 143

Query: 140 LPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGA-EVFHTLKKELKSKGYST 198
               L  +   G      L +Q           +R    M    V    +   +  G++ 
Sbjct: 144 EVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFND 203

Query: 199 NVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGEN 258
                G  +      +   + I      A         I LD   +              
Sbjct: 204 FKLKGGVLAG-----EEEAESIV-----ALAQRFPQARITLDPNGAWSL----------- 242

Query: 259 LELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPE 318
                   A  +   +     Y+ +   +E  + G +++     +       ++  T+  
Sbjct: 243 ------NEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWR 296

Query: 319 RLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAV 378
           ++   +    +  I +      ++  ++   +     G     SH +   +        V
Sbjct: 297 QMGHTL-SLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLT-WGSHSNNHFDISLAMFTHV 354

Query: 379 A 379
           A
Sbjct: 355 A 355


>3mzn_A Glucarate dehydratase; lyase, structural genomics, protein
           structure initiative, PS nysgrc; 1.85A {Chromohalobacter
           salexigens} PDB: 3nfu_A
          Length = 450

 Score = 57.4 bits (138), Expect = 5e-09
 Identities = 47/362 (12%), Positives = 96/362 (26%), Gaps = 56/362 (15%)

Query: 41  STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88
            +G HE +       L D+            +G+L  +    ++ R+ + G    +   +
Sbjct: 25  LSGGHEPWFIRCVLVLEDESGNRGVGEIPSSEGILNGL----EKCRSLVEGARVNEVKQV 80

Query: 89  DKIMIDLDGTPNKSRLG---------ANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139
                 L         G          + I  +  A+     Q   +P+   LG      
Sbjct: 81  LSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQR 140

Query: 140 LPVPLMNILNGGIHAD-NALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSK-GYS 197
             V  +  L      D   L +          + +R    M  E    L +    + G+ 
Sbjct: 141 DEVEALGYLFLLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFK 200

Query: 198 TNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGE 257
                 G         +   D I     +A + A  +  +ALD   +             
Sbjct: 201 DFKLKGGVLRG-----EEEADCI-----RALHEAFPEARLALDPNGAWKL---------- 240

Query: 258 NLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNP 317
                  + A  +   +     Y+ +    E  + G + +             ++  T+ 
Sbjct: 241 -------DEAVRVLEPIKHLLSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIATDY 293

Query: 318 ERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLA 377
           ++L   +     +  L   +        +   E     G     SH +   +        
Sbjct: 294 KQLQYAVQLNSVDIPLADCHFWTM-QGAVAVGELCNEWGMT-WGSHSNNHFDISLAMMTH 351

Query: 378 VA 379
           VA
Sbjct: 352 VA 353


>3n6h_A Mandelate racemase/muconate lactonizing protein; structural
           genomics, protein structure initiative; 2.30A
           {Actinobacillus succinogenes} PDB: 3n6j_A
          Length = 455

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 47/360 (13%), Positives = 93/360 (25%), Gaps = 53/360 (14%)

Query: 41  STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88
             G H  +       L D            G  +  A+     E    ++G        I
Sbjct: 29  VGGAHSPYFTRNIVILTDNSGHTGVGEAPGGATIENALT----EAIPHVVGRPISILNKI 84

Query: 89  DKIMIDLDGTPNKSRLG---------ANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139
              M +     +    G          NA+  +  A+     Q   +P+ + LG      
Sbjct: 85  VNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRD 144

Query: 140 LPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYSTN 199
             V ++      +  D   D      +    E      +   +    ++    SK     
Sbjct: 145 -EVTVLGY-LFYVGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASK----- 197

Query: 200 VGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGENL 259
             D  GF  + K              K G   G   +  +      F   +  I    N 
Sbjct: 198 --DRYGFK-DFKL-------------KGGVFEGSKEIDTVIELKKHF--PDARITLDPNG 239

Query: 260 ELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPER 319
               +E A  L   ++    Y+ +  + E+ + G +I+             ++  TN   
Sbjct: 240 CWSLDE-AIQLCKGLNDVLTYAEDPCIGENGYSGREIMAEFRRRTGIPTATNMIATNWRE 298

Query: 320 LHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVA 379
           +        +  I +      +++      +     G      H +   +        V 
Sbjct: 299 MCH-AIMLQSVDIPLADPHFWTLTGASRVAQLCNEWGLT-WGCHSNNHFDISLAMFSHVG 356


>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
           NYSGXRC, target 9265J, lyase, structural genomics,
           PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
          Length = 455

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 64/311 (20%)

Query: 65  AIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTS 124
           A   V+      L+G D R+  L+ + M        +  L    I  + LA+     +  
Sbjct: 89  ACWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLPIAVISVIDLALWDLLGKVR 148

Query: 125 NLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEF-MIMPVGAENIREAIRMGAEV 183
           N P+Y+ +GG +   L             A  A+ F    + +P   ++  E +R   E 
Sbjct: 149 NEPVYRLIGGATKERLD---FYCTGPEPTAAKAMGFWGGKVPLPFCPDDGHEGLRKNVEF 205

Query: 184 FHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAA 243
                                                   + K     G D  I +DC  
Sbjct: 206 ----------------------------------------LRKHREAVGPDFPIMVDCYM 225

Query: 244 SAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGS 303
           S                         L        I   E+ +S DD  G+ ++     +
Sbjct: 226 SLNV-----------------SYTIELVKACLDLNINWWEECLSPDDTDGFALIKRAHPT 268

Query: 304 NCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISH 363
                G+  +  +     K +     + I      +G ++E L     A     P ++ H
Sbjct: 269 VKFTTGEHEY--SRYGFRKLVEGRNLDIIQPDVMWLGGLTELLKVAALAAAYDVP-VVPH 325

Query: 364 RSGETEDHTIA 374
            SG    H   
Sbjct: 326 ASGPYSYHFQI 336


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 72/481 (14%), Positives = 127/481 (26%), Gaps = 215/481 (44%)

Query: 4   NDII-----AREVIDSRGSPTIEVDVCLEDGSTGRA---MVPSGASTGIHEAF-ELRDQE 54
            ++I     AR +                    G A    +  G      + F ELRD  
Sbjct: 120 KELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLVAIFGGQGN-TDDYFEELRDLY 177

Query: 55  KRYFGKGVLKAIAFVNDEIRTA--LLGCDARDQLLIDKIM---IDL-------DGTPNKS 102
           + Y           V D I+ +   L    R  L  +K+    +++         TP+K 
Sbjct: 178 QTYHV--------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229

Query: 103 RLGANAILGVSLAVSKAAAQTSNLPL--------Y----KYLGGCSAHILPVPLMNILNG 150
            L       +S+ +S         PL        Y    K LG  +    P  L + L G
Sbjct: 230 YL-------LSIPIS--------CPLIGVIQLAHYVVTAKLLG-FT----PGELRSYLKG 269

Query: 151 ------GI-------HADNALDFQEFMIMPVGAENIREAIRM----GAEVFHTL-KKELK 192
                 G+         D    ++ F        ++R+AI +    G   +       L 
Sbjct: 270 ATGHSQGLVTAVAIAETD---SWESFF------VSVRKAITVLFFIGVRCYEAYPNTSLP 320

Query: 193 SKGYSTNV-GDEGGFSPNLKTADSALDLIANSIEKAGYNA----GKDLLIALDCAASAF- 246
                 ++  +EG  SP L  ++   + + + + K   N+    GK + I+L   A    
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLV 378

Query: 247 ------------------------------FKKEK-----------------YI------ 253
                                         F + K                  +      
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438

Query: 254 ----LKGENLELQPNEMASYLANLVDQYPIYSIEDG-----MSED--------------D 290
               L   N+     ++           P+Y   DG     +S                 
Sbjct: 439 INKDLVKNNVSFNAKDIQ---------IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489

Query: 291 W---------H----------GWKILTNKI--GSNCQ--LVGDDLFVTNPERLHKGINEE 327
           W         H          G  +LT++   G+  +  + G          L    +++
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT---------LDINPDDD 540

Query: 328 V 328
            
Sbjct: 541 Y 541



 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 79/466 (16%), Positives = 139/466 (29%), Gaps = 163/466 (34%)

Query: 45  HEAFELRDQEKRYFGKGVLKAI--AFVNDEIRTALLGCDARDQLLIDKIMIDLDGT-PNK 101
           + +  +   +   F + VL      F   E    L G D     L  K++ + D T    
Sbjct: 67  YVSSLVEPSKVGQFDQ-VLNLCLTEF---E-NCYLEGNDI--HALAAKLLQENDTTLVKT 119

Query: 102 SRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNG-GIHADNALD- 159
             L  N I    +A      ++++  L++     +       L+ I  G G    N  D 
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSA-LFR-----AVGEGNAQLVAIFGGQG----NTDDY 169

Query: 160 FQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDL 219
           F+E                   +++ T         Y   VGD       +K +   L  
Sbjct: 170 FEEL-----------------RDLYQT---------YHVLVGD---L---IKFSAETLSE 197

Query: 220 IANSIEKAG--YNAGKDLLIAL-------DCA--ASA--------FFKKEKYILKGENLE 260
           +  +   A   +  G ++L  L       D     S           +   Y++  + L 
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257

Query: 261 LQPNEMASYLANLVDQYPIYSIEDGMSE-----------DDWHGWKILTNK-------IG 302
             P E+ SYL              G S+           D W  + +   K       IG
Sbjct: 258 FTPGELRSYLKGAT----------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307

Query: 303 SNCQ-----------LVGDD-----------LFVTNPER--LHKGINEEVANAILIKPNQ 338
             C            ++ D            L ++N  +  +   +N+   N+ L    Q
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK--TNSHLPAGKQ 365

Query: 339 IGSVSETL-NTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLAR---SD 394
           +  +S  L N  +   ++G P   S       + T+      +   Q      +R   S+
Sbjct: 366 V-EIS--LVNGAKNLVVSGPPQ--SLYG---LNLTLRKAKAPSGLDQ------SRIPFSE 411

Query: 395 RIAKY-NQLI----------------RIEESLGKQ-AKFAGRSILI 422
           R  K+ N+ +                 I + L K    F  + I I
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457


>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural
           genomics, NYSGXRC, target 9284B, enolase family, PSI-2;
           2.60A {Bordetella bronchiseptica}
          Length = 392

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 49/356 (13%), Positives = 81/356 (22%), Gaps = 85/356 (23%)

Query: 7   IAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI 66
            +   +  R  P + V+V   DG+ G   V         E                    
Sbjct: 30  TSFGTMHDR--PAVLVEVEDSDGAVGWGEVWCNFPACGAEHRA----------------- 70

Query: 67  AFVNDEIRTALLGCDARDQL----LIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122
             V   +   L      D       ++     L     +    A AI G+ +A+   AA+
Sbjct: 71  RLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAAR 130

Query: 123 TSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAE 182
            +  PL+ +LGG    I       +   GI+ +N  D                  R  AE
Sbjct: 131 RAGQPLWAWLGGSGDRI------GVYASGINPENPED---------------VVARKAAE 169

Query: 183 VFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCA 242
            +   K ++                      D A D+            G    +  D  
Sbjct: 170 GYRAFKLKVG--------------------FDDARDVRN--ALHVRELLGAATPLMADA- 206

Query: 243 ASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIG 302
                          N              L      +  E   ++     W  L     
Sbjct: 207 ---------------NQGWDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAELAQAAP 251

Query: 303 SNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYP 358
                +     +         +       +     + G  S  L        AG  
Sbjct: 252 ---MPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLR 304


>2hxt_A L-fuconate dehydratase; enolase superfamily, D-
           erythromohydroxamate, unknown function; HET: EHM; 1.70A
           {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
          Length = 441

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 51/325 (15%), Positives = 91/325 (28%), Gaps = 23/325 (7%)

Query: 65  AIAFVNDEIRTALLGCDARD-QLLIDKIMIDLDGTPNKSRLGA------NAILGVSLAVS 117
                   +   ++G         +      L        LG        AI  V  A  
Sbjct: 62  VQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAW 121

Query: 118 KAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAI 177
             AA+ +N PL++++   +   L   +           +          P  A      I
Sbjct: 122 DLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLI 181

Query: 178 RMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLI 237
             G   + T    L   GYS            ++ A  A+     +I+       +D + 
Sbjct: 182 EQGYPAYTTSPGWL---GYSDE--------KLVRLAKEAVADGFRTIKLKVGANVQDDIR 230

Query: 238 ALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKIL 297
               A +A        +           +       + ++ I  IE+  S DD  G   +
Sbjct: 231 RCRLARAAIGPDIAMAVDANQRWDVGPAIDWM--RQLAEFDIAWIEEPTSPDDVLGHAAI 288

Query: 298 TNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGY 357
              I       G+        +    +     + I I   ++G V+E L  +  A   G 
Sbjct: 289 RQGITPVPVSTGEHTQNRVVFKQL--LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGV 346

Query: 358 PSIISHRSGETEDHTIADLAVATNC 382
             +  H  G      +  LA+A   
Sbjct: 347 R-VFPHAGGVGLCELVQHLAMADFV 370


>3p0w_A Mandelate racemase/muconate lactonizing protein; structural
           genomics, PSI-2, protein structure initiative; HET: GKR;
           1.71A {Ralstonia pickettii} PDB: 3nxl_A
          Length = 470

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 50/365 (13%), Positives = 93/365 (25%), Gaps = 41/365 (11%)

Query: 22  VDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCD 81
           V +    G TG   VP G   GI +A  L        G+ +      V   IR AL G  
Sbjct: 41  VILKDNAGRTGVGEVPGGE--GIRQA--LERVIPLVVGQSIG-RTNGVLSSIRRALAGGG 95

Query: 82  ARDQLLIDKIMIDLD------GTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGC 135
                     +               +    N I  V  A+     Q   +P+ + LG  
Sbjct: 96  NAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAG 155

Query: 136 SAH-ILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSK 194
                 P+       G     +    +             EA    A +    +   +  
Sbjct: 156 QQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERY 215

Query: 195 GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYIL 254
           G++      G            ++ I      A         + LD   +          
Sbjct: 216 GFADFKLKGGVMPG-----AEEMEAI-----AAIKARFPHARVTLDPNGAWSLN------ 259

Query: 255 KGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFV 314
                       A  L         Y+ +    E  + G +++     +       ++  
Sbjct: 260 -----------EAIALCKGQGHLVAYAEDPCGPEAGYSGREVMAEFKRATGIPTATNMIA 308

Query: 315 TNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIA 374
           T+  ++   +     +  L  P+    +  ++   +     G     SH +   +     
Sbjct: 309 TDWRQMGHAVQLHAVDIPLADPHFWT-MQGSVRVAQLCDEWGLT-WGSHSNNHFDVSLAM 366

Query: 375 DLAVA 379
              VA
Sbjct: 367 FTHVA 371


>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET:
           RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2
           d.54.1.1 PDB: 1mdr_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
          Length = 359

 Score = 38.4 bits (88), Expect = 0.004
 Identities = 54/386 (13%), Positives = 115/386 (29%), Gaps = 93/386 (24%)

Query: 1   MFINDIIAREV--------IDSRGS----PTIEVDVCLEDGSTGRAMVPSGASTGIHEAF 48
           + I  +  R V          + G+    P + +D+    G  G + + +          
Sbjct: 4   VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFA---------- 53

Query: 49  ELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANA 108
                    +    LK++  + D++   ++       + ++ ++         + L   A
Sbjct: 54  ---------YTPVALKSLKQLLDDMAAMIVNEPL-APVSLEAMLAKRFCLAGYTGLIRMA 103

Query: 109 ILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPV 168
             G+ +A   A  +    PL K LG  +  +      ++    +  + A+   E     V
Sbjct: 104 AAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAV 163

Query: 169 GAENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAG 228
                  A+     V  ++++ +                                     
Sbjct: 164 KTRIGYPALDQDLAVVRSIRQAV------------------------------------- 186

Query: 229 YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSE 288
              G D  I +D   S                      A   +  + Q  +  IE+   +
Sbjct: 187 ---GDDFGIMVDYNQS-----------------LDVPAAIKRSQALQQEGVTWIEEPTLQ 226

Query: 289 DDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNT 348
            D+ G + + +K+    Q+         PE + K ++       +    +IG V+  +  
Sbjct: 227 HDYEGHQRIQSKLNVPVQM---GENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRA 283

Query: 349 IEKAQMAGYPSIISHRSGETEDHTIA 374
              AQ  G P + SH   E   H +A
Sbjct: 284 SALAQQFGIP-MSSHLFQEISAHLLA 308


>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
           initiative; 1.60A {Desulfotalea psychrophila LSV54}
          Length = 377

 Score = 36.5 bits (83), Expect = 0.011
 Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 6/135 (4%)

Query: 7   IAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI 66
            +R V+ S+ +  + +D    DG  G+  V       + +  E   +E     + +    
Sbjct: 22  TSRGVLTSKPTWFVRLD---IDGHGGQGEVSLIPGLSL-DPEEQIGRELDLLARRLRAEE 77

Query: 67  AFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGAN--AILGVSLAVSKAAAQTS 124
                +      G D  D   +   +  +  +   S  G        + +A+    +   
Sbjct: 78  PIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGR 137

Query: 125 NLPLYKYLGGCSAHI 139
                         I
Sbjct: 138 QEWFASDFTRGEKRI 152


>3n4f_A Mandelate racemase/muconate lactonizing protein; structural
           genomics, protein structure INI NEW YORK structural
           genomix research consortium; HET: MSE; 1.88A
           {Geobacillus SP}
          Length = 392

 Score = 35.9 bits (82), Expect = 0.018
 Identities = 38/293 (12%), Positives = 74/293 (25%), Gaps = 47/293 (16%)

Query: 71  DEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYK 130
            E    ++G    D       + D  G     RL     L +   V     Q    P+Y 
Sbjct: 66  PEWAEDVIGRRLLD-------LFDDRG-----RLREAYRLQLEYPVLDWLGQRQGKPVYD 113

Query: 131 YLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKE 190
            + G         ++   +  ++ D+     E   + +  E   +    G       K  
Sbjct: 114 LVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKG---QRHFK-- 168

Query: 191 LKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKE 250
                    VG  G   P  +     + ++    E AG        I +D   +      
Sbjct: 169 -------IKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGK----IMIDANNAYNL--- 214

Query: 251 KYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGD 310
                          +   +   +    +Y +E+   ED+     +          ++  
Sbjct: 215 --------------NLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIA 260

Query: 311 DLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISH 363
           D        L +       + +       G  +  +   EK    G      H
Sbjct: 261 DGEGLASPHLIEWATRGRVDVLQYDIIWPG-FTHWMELGEKLDAHGLR-SAPH 311


>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing
           enzyme subgroup, alpha/beta barrel, structural genomics,
           isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2
           d.54.1.1
          Length = 324

 Score = 34.5 bits (78), Expect = 0.043
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 265 EMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGI 324
           E  +    L+    +  +E  +   D    +   + +      +  D        L    
Sbjct: 187 EGLAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLP-----ICADESCHTRSNLKALK 241

Query: 325 NEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNC 382
                  + IK ++ G ++E L    +A+  G+  ++      T     A L +    
Sbjct: 242 GR--YEMVNIKLDKTGGLTEALALATEARAQGFS-LMLGCMLCTSRAISAALPLVPQV 296


>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
           radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
           2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
          Length = 375

 Score = 31.5 bits (70), Expect = 0.37
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 23/142 (16%)

Query: 6   IIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKA 65
             +  V   +  P + +     +G  G A     A                Y  + +  A
Sbjct: 27  ETSFGVQTHKVVPLLILH---GEGVQGVAEGTMEARPM-------------YREETIAGA 70

Query: 66  IAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSN 125
           +  +      A+LG    +   +   +    G          A   V +A     A+T  
Sbjct: 71  LDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRM-------ARAMVEMAAWDLWARTLG 123

Query: 126 LPLYKYLGGCSAHILPVPLMNI 147
           +PL   LGG    +     + I
Sbjct: 124 VPLGTLLGGHKEQVEVGVSLGI 145


>3c9h_A ABC transporter, substrate binding protein; structural genomics,
           MCSG, PSI-2, protein structure initiative; HET: CIT;
           1.90A {Agrobacterium tumefaciens str}
          Length = 355

 Score = 27.9 bits (60), Expect = 4.0
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 110 LGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVG 169
           LG ++  S AA   S  P    +      ++   +  +     + +    + EF +   G
Sbjct: 230 LGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEG 289

Query: 170 AENIREAIRM 179
              +   +++
Sbjct: 290 QTIMARQLQI 299


>3nft_A Translocator protein BIPD; virulence, translocation, transport
           protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A
           2j9t_A* 2izp_A
          Length = 303

 Score = 27.5 bits (60), Expect = 5.2
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 22/136 (16%)

Query: 171 ENIREAIRMGAEVFHTLKKELKS---KGYSTNVGDEGGFSPN---------LKTADSALD 218
           ++ R A+R  A     L + L++    G     GDEGG  P+         +    S +D
Sbjct: 79  DDARVAVRGHARAQRNLLERLETELLGGTLDTAGDEGGIQPDPILQGLVDVIGQGKSDID 138

Query: 219 LIANSIEKAG--YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQ 276
             A  +E     + +  D++  L    SA           +N+++   ++ + +  ++D 
Sbjct: 139 AYATIVEGLTKYFQSVADVMSKLQDYISAK--------DDKNMKIDGGKIKALIQQVIDH 190

Query: 277 YPIYSIEDGMSEDDWH 292
            P   +  G     W 
Sbjct: 191 LPTMQLPKGADIARWR 206


>2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein;
           polyamine binding, syphilis, lipoprotein, transport
           protein; HET: MES; 1.78A {Treponema pallidum}
          Length = 343

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 11/68 (16%), Positives = 21/68 (30%)

Query: 110 LGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVG 169
            G + A      +  +  +  ++    A  + V    I  G  + D A  F  F + P  
Sbjct: 225 HGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEPAH 284

Query: 170 AENIREAI 177
                +  
Sbjct: 285 YAEFLDTF 292


>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
           protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
           c.94.1.1 PDB: 1poy_1*
          Length = 325

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 145 MNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180
           + I     + + AL    F++ P  A+ + E I   
Sbjct: 236 LAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYP 271


>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
           {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
          Length = 397

 Score = 27.4 bits (59), Expect = 6.8
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 229 YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLAN------LVDQYPIYSI 282
           +N G     ++        K   + +       +  + A  +A       ++   P Y  
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDT 363

Query: 283 EDGMSEDDW 291
            + + E  W
Sbjct: 364 LEAIMETSW 372


>1rh2_A Interferon-alpha 2B; cytokine, anti-viral, immunomodulator, 4 helix
           bundle; 2.90A {Homo sapiens} SCOP: a.26.1.3 PDB: 1itf_A
           2hym_B
          Length = 165

 Score = 27.1 bits (60), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 167 PVGAENIREAIRMGAEVFHTLKKELKSKGYS 197
           P+  E+   A+R     F  +   LK K YS
Sbjct: 109 PLMNEDSILAVRK---YFQRITLYLKEKKYS 136


>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
           autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
           1aq6_A
          Length = 253

 Score = 27.4 bits (59), Expect = 7.2
 Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 3/122 (2%)

Query: 246 FFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNC 305
             +     +      L P   A+     +       + +G  +               + 
Sbjct: 77  PDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDMLQALVANAGLTDSFDA 136

Query: 306 QLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRS 365
            +  D   V  P   H      V   + + P ++  VS     +  A+  G+      R 
Sbjct: 137 VISVDAKRVFKP---HPDSYALVEEVLGVTPAEVLFVSSNGFDVGGAKNFGFSVARVARL 193

Query: 366 GE 367
            +
Sbjct: 194 SQ 195


>3czt_X Protein S100-B; EF-hand,calcium, zinc, copper, cytoplasm, metal-
           binding, nucleus, metal binding protein; 1.40A {Homo
           sapiens} PDB: 2h61_A 3d0y_A* 3d10_A* 1mq1_A 1uwo_A
           2pru_A 1b4c_A 1dt7_A 1mwn_A 1qlk_A 1sym_A 1xyd_A 1cfp_A
           3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 1psb_A
           ...
          Length = 92

 Score = 27.0 bits (60), Expect = 9.1
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 144 LMNILNGGIHADNALDFQEFMIM 166
           +M  L+     D   DFQEFM  
Sbjct: 57  VMETLD--NDGDGECDFQEFMAF 77


>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
           HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
           c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
           1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
           3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
           3cau_A ...
          Length = 547

 Score = 26.7 bits (59), Expect = 9.3
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 313 FVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHT 372
           F+  PE    G  E  +  IL+   +I ++ E L  +E    AG P +I   + + E   
Sbjct: 203 FINKPE---TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII--AEDVEGEA 257

Query: 373 IADLAVATNCGQIK 386
           +A L V T  G +K
Sbjct: 258 LATLVVNTMRGIVK 271


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,576,152
Number of extensions: 166829
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 43
Length of query: 424
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 329
Effective length of database: 3,390,050
Effective search space: 1115326450
Effective search space used: 1115326450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)