BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%) Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK Sbjct: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60 Query: 61 GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120 GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA Sbjct: 61 GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120 Query: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG Sbjct: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180 Query: 181 AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD 240 AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD Sbjct: 181 AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD 240 Query: 241 CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK 300 CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK Sbjct: 241 CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK 300 Query: 301 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI Sbjct: 301 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360 Query: 361 ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI 420 ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI Sbjct: 361 ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI 420 Query: 421 LIHQ 424 LIHQ Sbjct: 421 LIHQ 424 >gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 381 Score = 30.8 bits (68), Expect = 0.040, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 320 LHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361 + +GIN A AI I N I S +E +N K+ G+P I+ Sbjct: 127 IREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIV 168 >gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62] Length = 239 Score = 26.6 bits (57), Expect = 0.80, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 17/102 (16%) Query: 160 FQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYS------TNVGDEG---GF---- 206 F +I ENI E + + + L KE K +S GDE GF Sbjct: 49 FHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIG 108 Query: 207 ----SPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAAS 244 +PN K S N +KA G DL+I +CA++ Sbjct: 109 WNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASA 150 >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 26.2 bits (56), Expect = 1.00, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 23/48 (47%) Query: 23 DVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVN 70 +V + D TGR M S G H+A E +++ K L +I F N Sbjct: 322 EVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQN 369 >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] Length = 675 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 370 DHTIADLAVATNCGQIKTGSLARSDRIAK-YNQL 402 +H I DL + T C ++K + R+++ +N+L Sbjct: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 >gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 1576 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 378 VATNCGQIKTGSLARSDRIAKY 399 V CG+I G L SDR A Y Sbjct: 777 VHLRCGKIARGGLRWSDRAADY 798 >gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 288 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 214 DSALDLIANSIEKAGYNAGKDL--LIALDCAASAFFKKEKYILKGENLELQPNEMASYLA 271 D +DL+ ++I+ A +A K L L CA +K ILK N L N+ +Y+A Sbjct: 216 DGKIDLVKSNID-AIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIA 274 Query: 272 NLVDQYPI 279 +D PI Sbjct: 275 AHIDGVPI 282 >gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust. Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 179 MGAEVFHTLKKELKS 193 MG EVFH ++K LK+ Sbjct: 203 MGVEVFHDMQKGLKN 217 >gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str. psy62] Length = 278 Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Query: 97 GTPNKSRL-----GANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGG 151 G N+ RL G + GV + +T+ + L Y G A+IL +++ + Sbjct: 57 GHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKV 116 Query: 152 IHADNALDFQEFMIMPV 168 I +D+A+D + MP+ Sbjct: 117 ISSDSAVDVKPGNAMPL 133 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 23.1 bits (48), Expect = 9.7, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 12/21 (57%) Query: 404 RIEESLGKQAKFAGRSILIHQ 424 RI GK K A + +LIHQ Sbjct: 48 RIRSEAGKHRKNAAKRMLIHQ 68 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.135 0.382 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,539 Number of Sequences: 1233 Number of extensions: 10970 Number of successful extensions: 38 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 11 length of query: 424 length of database: 328,796 effective HSP length: 76 effective length of query: 348 effective length of database: 235,088 effective search space: 81810624 effective search space used: 81810624 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)