BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
         (424 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 424

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/424 (100%), Positives = 424/424 (100%)

Query: 1   MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60
           MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK
Sbjct: 1   MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60

Query: 61  GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120
           GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA
Sbjct: 61  GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120

Query: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180
           AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG
Sbjct: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180

Query: 181 AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD 240
           AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD
Sbjct: 181 AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD 240

Query: 241 CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK 300
           CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK
Sbjct: 241 CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK 300

Query: 301 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360
           IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI
Sbjct: 301 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360

Query: 361 ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI 420
           ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI
Sbjct: 361 ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI 420

Query: 421 LIHQ 424
           LIHQ
Sbjct: 421 LIHQ 424


>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 381

 Score = 30.8 bits (68), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 320 LHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361
           + +GIN   A AI I  N I S +E +N   K+   G+P I+
Sbjct: 127 IREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIV 168


>gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 239

 Score = 26.6 bits (57), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 160 FQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYS------TNVGDEG---GF---- 206
           F   +I     ENI E  +   +  + L KE K   +S         GDE    GF    
Sbjct: 49  FHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIG 108

Query: 207 ----SPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAAS 244
               +PN K   S      N  +KA    G DL+I  +CA++
Sbjct: 109 WNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASA 150


>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 890

 Score = 26.2 bits (56), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 23  DVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVN 70
           +V + D  TGR M     S G H+A E +++ K       L +I F N
Sbjct: 322 EVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQN 369


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 675

 Score = 25.4 bits (54), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 370 DHTIADLAVATNCGQIKTGSLARSDRIAK-YNQL 402
           +H I DL + T C ++K     +  R+++ +N+L
Sbjct: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 1576

 Score = 24.6 bits (52), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 378 VATNCGQIKTGSLARSDRIAKY 399
           V   CG+I  G L  SDR A Y
Sbjct: 777 VHLRCGKIARGGLRWSDRAADY 798


>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
           peptide protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 288

 Score = 24.3 bits (51), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 214 DSALDLIANSIEKAGYNAGKDL--LIALDCAASAFFKKEKYILKGENLELQPNEMASYLA 271
           D  +DL+ ++I+ A  +A K L  L    CA     +K   ILK  N  L  N+  +Y+A
Sbjct: 216 DGKIDLVKSNID-AIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIA 274

Query: 272 NLVDQYPI 279
             +D  PI
Sbjct: 275 AHIDGVPI 282


>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 23.9 bits (50), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 179 MGAEVFHTLKKELKS 193
           MG EVFH ++K LK+
Sbjct: 203 MGVEVFHDMQKGLKN 217


>gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 278

 Score = 23.5 bits (49), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 97  GTPNKSRL-----GANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGG 151
           G  N+ RL     G   + GV   +     +T+ + L  Y  G  A+IL    +++ +  
Sbjct: 57  GHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKV 116

Query: 152 IHADNALDFQEFMIMPV 168
           I +D+A+D +    MP+
Sbjct: 117 ISSDSAVDVKPGNAMPL 133


>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 805

 Score = 23.1 bits (48), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 404 RIEESLGKQAKFAGRSILIHQ 424
           RI    GK  K A + +LIHQ
Sbjct: 48  RIRSEAGKHRKNAAKRMLIHQ 68


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.135    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,539
Number of Sequences: 1233
Number of extensions: 10970
Number of successful extensions: 38
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 11
length of query: 424
length of database: 328,796
effective HSP length: 76
effective length of query: 348
effective length of database: 235,088
effective search space: 81810624
effective search space used: 81810624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)