HHsearch alignment for GI: 254780671 and conserved domain: TIGR02894

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family; InterPro: IPR014243 This entry represents a set of transcription factors found in some endospore-forming bacteria within the Firmicutes (low-GC Gram-positive bacteria). In some species these proteins are encoded multiple times. The best characterised protein in this entry is the prespore-specific transcription factor RsfA from Bacillus subtilis, previously known as YwfN. Expression of RsfA is controlled by sigma factor F, and it seems to improve the efficiency of sporulation by fine-tuning the expression of genes in the sigma F regulon, particularly the timing of their expression . It also negatively regulates spoIIR and its own synthesis. A paralog in B. subtilis is designated YlbO, though its function is not known. A highly variable linker region separates two very strongly conserved sequence regions within the protein. .
Probab=91.17  E-value=1.4  Score=24.55  Aligned_cols=53  Identities=15%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999983720399999999999999999999999999999999950279
Q gi|254780671|r   20 AFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        20 ~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
T Consensus        83 Tl~~VI~FLq~~---~~~~~~~~~l~~E~~~L~~~~~~Lq~~ne~L~~el~~L~~~  135 (163)
T TIGR02894        83 TLQDVISFLQNL---KTTNPSDQALQKENERLKKELESLQKRNEELEKELEKLEKR  135 (163)
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             878899999998---88779999999899999999999999999999999999998