Query         gi|254780671|ref|YP_003065084.1| putative cell division protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 105
No_of_seqs    100 out of 686
Neff          7.1 
Searched_HMMs 39220
Date          Sun May 29 23:49:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780671.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00888 ftsB cell division pr  99.8 4.1E-18   1E-22  131.7  12.5   87   15-104     3-89  (105)
  2 pfam04977 DivIC Septum formati  99.7 8.1E-17 2.1E-21  123.8   9.8   79   23-104     1-79  (80)
  3 COG2919 Septum formation initi  99.7 3.8E-16 9.7E-21  119.7  12.8  101    1-104    12-112 (117)
  4 TIGR02209 ftsL_broad cell divi  97.9 0.00026 6.5E-09   47.4  10.8   60   39-102    24-83  (85)
  5 pfam04999 FtsL Cell division p  97.1    0.01 2.6E-07   37.6   9.9   56   39-98     35-90  (97)
  6 PRK10772 cell division protein  95.9    0.16 4.2E-06   30.2  11.6   59   39-101    58-119 (121)
  7 COG3116 FtsL Cell division pro  95.5    0.24 6.1E-06   29.2  10.5   53   40-96     44-96  (105)
  8 COG4839 FtsL Protein required   94.2    0.51 1.3E-05   27.2  11.5   58   39-101    60-117 (120)
  9 TIGR02894 DNA_bind_RsfA transc  91.2     1.4 3.6E-05   24.5   8.3   53   20-75     83-135 (163)
 10 pfam05137 PilN Fimbrial assemb  89.1     2.1 5.3E-05   23.5  10.3   82    6-88     13-105 (162)
 11 pfam07407 Seadorna_VP6 Seadorn  88.7    0.77   2E-05   26.1   4.3   41   46-86     32-72  (420)
 12 pfam11853 DUF3373 Protein of u  87.3     1.7 4.3E-05   24.1   5.3   34   40-73     25-58  (485)
 13 pfam08961 DUF1875 Domain of un  86.8     2.1 5.4E-05   23.4   5.6   57   39-97    129-191 (243)
 14 pfam06005 DUF904 Protein of un  85.2     3.5 8.9E-05   22.1   6.3   53   39-94     18-70  (72)
 15 PRK11677 cytochrome d ubiquino  83.2     4.2 0.00011   21.6   9.0   51   20-72     12-62  (134)
 16 pfam03245 Phage_lysis Bacterio  82.0     4.7 0.00012   21.3   9.4   49   38-88     25-73  (151)
 17 pfam11382 DUF3186 Protein of u  81.3       5 0.00013   21.2  11.6   57   41-103    34-90  (307)
 18 pfam12097 DUF3573 Protein of u  79.9     5.5 0.00014   20.9   5.9   31   44-74     33-63  (375)
 19 PRK09039 hypothetical protein;  77.8     6.4 0.00016   20.5   7.8   35   40-74     54-88  (343)
 20 pfam08936 CsoSCA Carboxysome S  76.7     6.9 0.00018   20.3   5.2   53   43-98      7-62  (459)
 21 pfam06305 DUF1049 Protein of u  76.2     7.1 0.00018   20.2   6.0   29   37-65     51-79  (80)
 22 pfam02183 HALZ Homeobox associ  73.7     8.2 0.00021   19.8   4.9   35   40-74      6-40  (45)
 23 pfam07423 DUF1510 Protein of u  73.5     3.8 9.8E-05   21.9   3.2   32    4-36      8-39  (214)
 24 KOG4797 consensus               72.1       9 0.00023   19.6   6.3   45   41-86     62-106 (123)
 25 pfam08537 NBP1 Fungal Nap bind  70.6     9.7 0.00025   19.4   5.9   42   41-85    175-223 (313)
 26 KOG4571 consensus               69.2      10 0.00027   19.2   5.8   47   40-89    241-288 (294)
 27 TIGR03007 pepcterm_ChnLen poly  68.9      10 0.00026   19.2   4.5   36   40-75    323-358 (510)
 28 pfam01166 TSC22 TSC-22/dip/bun  67.6      11 0.00029   19.0   6.4   43   42-85     10-52  (57)
 29 pfam07106 TBPIP Tat binding pr  66.5      12  0.0003   18.9   7.0   50   38-87     71-120 (169)
 30 pfam06295 DUF1043 Protein of u  61.3      15 0.00038   18.3   8.6   49   22-72     10-58  (128)
 31 pfam04111 APG6 Autophagy prote  60.3      15 0.00039   18.2   5.0   45   40-84     71-115 (356)
 32 COG4942 Membrane-bound metallo  59.7      16  0.0004   18.1   7.1   36   39-74     38-73  (420)
 33 pfam09889 DUF2116 Uncharacteri  58.9      15 0.00038   18.3   3.8   29    2-30     28-56  (59)
 34 pfam10883 DUF2681 Protein of u  57.5      17 0.00044   17.9   8.2   48   17-71      6-53  (78)
 35 KOG4603 consensus               57.4      17 0.00044   17.9   5.3   48   39-86     79-126 (201)
 36 pfam10211 Ax_dynein_light Axon  54.8      19 0.00049   17.6   5.8   47   37-86    111-157 (189)
 37 pfam07716 bZIP_2 Basic region   54.4      19 0.00049   17.6   5.3   34   41-74     20-53  (54)
 38 PRK13922 rod shape-determining  52.1      21 0.00054   17.3  10.0   47   44-94     60-106 (264)
 39 pfam05377 FlaC_arch Flagella a  52.1      18 0.00047   17.7   3.4   45   43-87      4-49  (55)
 40 KOG0483 consensus               50.9      22 0.00056   17.2   4.3   49   27-75     92-141 (198)
 41 TIGR03064 sortase_srtB sortase  50.4      13 0.00034   18.6   2.4   39   13-54      3-41  (232)
 42 pfam00170 bZIP_1 bZIP transcri  50.2      23 0.00058   17.2   5.2   34   41-74     16-49  (59)
 43 PRK03992 proteasome-activating  50.2      23 0.00058   17.2   4.9   33   41-73     11-43  (390)
 44 pfam08172 CASP_C CASP C termin  50.0      23 0.00058   17.1   6.2   50   41-93     88-137 (245)
 45 pfam03518 consensus             49.5      23 0.00059   17.1   5.8   45   41-87      9-53  (349)
 46 KOG4196 consensus               49.5      23 0.00059   17.1   5.2   37   38-74     73-109 (135)
 47 pfam11119 DUF2633 Protein of u  49.5      18 0.00047   17.7   3.0   29    4-32      2-30  (59)
 48 TIGR02976 phageshock_pspB phag  48.3      24 0.00062   17.0   5.0   25   50-74     39-63  (75)
 49 KOG3705 consensus               47.6      25 0.00063   16.9   7.0   81   13-95     13-95  (580)
 50 pfam03980 Nnf1 Nnf1. NNF1 is a  47.0      25 0.00065   16.8   5.1   34   41-74     74-107 (108)
 51 KOG0642 consensus               46.4      26 0.00066   16.8   3.5   55   42-96     37-91  (577)
 52 KOG3335 consensus               46.4      22 0.00056   17.2   3.0   27   48-74    101-127 (181)
 53 COG3074 Uncharacterized protei  45.7      27 0.00068   16.7   5.3   49   41-92     27-75  (79)
 54 KOG0999 consensus               44.8      27  0.0007   16.6   7.2   53   38-90    106-158 (772)
 55 KOG0288 consensus               44.5      28 0.00071   16.6   6.1   46   41-88     29-74  (459)
 56 pfam03962 Mnd1 Mnd1 family. Th  44.1      28 0.00072   16.6   6.0   36   50-87    107-142 (188)
 57 KOG0994 consensus               43.6      29 0.00073   16.5   7.4   50   47-96   1455-1508(1758)
 58 pfam09851 DUF2078 Predicted me  43.5      18 0.00045   17.8   2.2   61   12-72     11-71  (73)
 59 COG3879 Uncharacterized protei  43.2      29 0.00074   16.5  10.0   65   29-93     39-108 (247)
 60 KOG1103 consensus               42.9      29 0.00075   16.5   5.6   62   35-99    234-298 (561)
 61 TIGR01242 26Sp45 26S proteasom  42.6      30 0.00076   16.4   5.3   37   39-75      6-42  (364)
 62 smart00338 BRLZ basic region l  42.0      30 0.00077   16.4   4.4   34   41-74     21-54  (65)
 63 COG3883 Uncharacterized protei  41.0      31  0.0008   16.3   9.0   10   80-89    101-110 (265)
 64 PRK11415 hypothetical protein;  40.9      32  0.0008   16.3   5.6   54   39-92      3-58  (74)
 65 pfam06103 DUF948 Bacterial pro  40.9      32  0.0008   16.3   9.5   58   15-74      4-61  (90)
 66 pfam12269 zf-CpG_bind_C CpG bi  38.1      35 0.00089   16.0   5.5   49   32-80     22-70  (236)
 67 pfam07926 TPR_MLP1_2 TPR/MLP1/  37.7      35  0.0009   16.0   4.9   29   44-72    103-131 (132)
 68 PRK13169 DNA replication intia  37.0      36 0.00092   15.9   5.5   35   39-73     22-56  (107)
 69 TIGR01000 bacteriocin_acc bact  37.0      30 0.00078   16.4   2.6   30   46-75     98-127 (476)
 70 pfam06156 DUF972 Protein of un  36.6      37 0.00094   15.9   5.0   33   40-72     23-55  (106)
 71 PRK03784 vtamin B12-transporte  36.3      37 0.00095   15.8   4.2   36    3-38      4-39  (330)
 72 cd07429 Cby_like Chibby, a nuc  36.1      37 0.00096   15.8   5.0   34   46-85     72-105 (108)
 73 PTZ00234 variable surface prot  35.6     6.3 0.00016   20.5  -1.1   63    6-69    358-429 (433)
 74 pfam05103 DivIVA DivIVA protei  35.4      38 0.00098   15.7   4.2   35   40-74     19-53  (131)
 75 pfam06447 consensus             35.4      39 0.00098   15.7   5.2   22   51-72     88-109 (407)
 76 TIGR00393 kpsF sugar isomerase  34.6      24  0.0006   17.0   1.7   21   84-104    36-56  (272)
 77 pfam11855 DUF3375 Protein of u  34.5      40   0.001   15.7   4.2   42   51-92    139-183 (471)
 78 pfam06936 Selenoprotein_S Sele  33.9      41   0.001   15.6   5.8   18   16-33     38-55  (190)
 79 KOG2895 consensus               32.8      34 0.00087   16.1   2.2   43   21-68    346-388 (408)
 80 pfam05833 FbpA Fibronectin-bin  32.7      43  0.0011   15.5   8.1   45   40-85    380-424 (447)
 81 pfam07047 OPA3 Optic atrophy 3  31.3      45  0.0011   15.3   8.2   27   47-73    106-132 (134)
 82 COG5278 Predicted periplasmic   31.0      45  0.0012   15.3   8.1   23   61-83     85-108 (207)
 83 TIGR01367 pyrE_Therm orotate p  30.3      27 0.00069   16.7   1.4   13   92-104   107-119 (205)
 84 PRK10998 malG maltose transpor  30.2      47  0.0012   15.2   3.7   28    1-28      1-28  (296)
 85 PRK12705 hypothetical protein;  29.6      48  0.0012   15.2   9.8   14   49-62     49-62  (485)
 86 KOG4643 consensus               29.1      49  0.0013   15.1   5.0   34   41-74    525-558 (1195)
 87 pfam03131 bZIP_Maf bZIP Maf tr  28.3      51  0.0013   15.0   5.5   37   38-74     52-88  (95)
 88 PRK09458 pspB phage shock prot  27.3      53  0.0013   14.9   5.4   37   38-74     23-63  (75)
 89 COG4499 Predicted membrane pro  27.1      53  0.0014   14.9   6.2   74    6-93    214-290 (434)
 90 pfam05384 DegS Sensor protein   27.0      53  0.0014   14.9   5.9   39   45-90     26-64  (159)
 91 pfam10224 DUF2205 Predicted co  26.8      54  0.0014   14.8   6.5   40   43-88     27-66  (81)
 92 pfam06667 PspB Phage shock pro  26.5      54  0.0014   14.8   4.3   37   38-74     23-63  (75)
 93 pfam11285 DUF3086 Protein of u  26.3      55  0.0014   14.8   6.3   37   39-75      4-40  (283)
 94 pfam06810 Phage_GP20 Phage min  26.0      56  0.0014   14.8   6.6   35   41-75     29-66  (156)
 95 PRK11091 aerobic respiration c  25.4      57  0.0015   14.7   8.4   13   62-74    105-117 (779)
 96 pfam05812 Herpes_BLRF2 Herpesv  25.4      57  0.0015   14.7   3.8   27   47-73      4-30  (118)
 97 TIGR02351 thiH thiazole biosyn  25.4      46  0.0012   15.3   1.9   40   49-90     22-62  (378)
 98 pfam08285 DPM3 Dolichol-phosph  25.2      58  0.0015   14.7   7.2   48    9-56     34-85  (91)
 99 pfam04415 DUF515 Protein of un  25.2      58  0.0015   14.7   9.7   67    4-74     26-99  (416)
100 PRK13729 conjugal transfer pil  24.8      59  0.0015   14.6   5.1   30   44-73     81-110 (474)
101 pfam08614 ATG16 Autophagy prot  24.5      59  0.0015   14.6   5.1   31   43-73    106-136 (194)
102 COG3394 Uncharacterized protei  24.3      54  0.0014   14.8   2.1   21   78-98    210-230 (257)
103 KOG3156 consensus               24.0      61  0.0015   14.5   6.0   40   44-88    106-146 (220)
104 PRK10549 signal transduction h  23.8      61  0.0016   14.5   8.1   15   31-45     32-46  (467)
105 PRK03147 thiol-disulfide oxido  23.7      51  0.0013   15.0   1.8   29    6-34      3-31  (176)
106 PRK08475 F0F1 ATP synthase sub  23.3      63  0.0016   14.4   9.9   61   12-74     29-90  (170)
107 PRK04335 cell division protein  23.3      63  0.0016   14.4   2.7   22   12-33      4-25  (319)
108 KOG3584 consensus               23.1      63  0.0016   14.4   3.2   27   47-73    313-339 (348)
109 cd01570 NAPRTase_A Nicotinate   22.8      64  0.0016   14.4   2.9   34   71-104   252-285 (327)
110 pfam10205 KLRAQ Predicted coil  22.7      65  0.0016   14.4   4.5   40   41-83     35-74  (102)
111 KOG3119 consensus               22.5      65  0.0017   14.3   4.7   25   49-73    218-242 (269)
112 TIGR02977 phageshock_pspA phag  22.0      67  0.0017   14.3   6.3   48   38-90     91-138 (222)
113 pfam03100 CcmE CcmE. CcmE is t  21.8      67  0.0017   14.3   2.7   25    8-32      5-29  (130)
114 pfam09340 NuA4 Histone acetylt  21.6      68  0.0017   14.2   4.0   32   47-83      3-34  (80)
115 pfam00952 Bunya_nucleocap Buny  21.5      41   0.001   15.6   1.0   29   69-97    159-187 (228)
116 PRK06835 DNA replication prote  21.2      69  0.0018   14.2   3.1   33   52-84     64-97  (330)
117 pfam08941 USP8_interact USP8 i  21.2      69  0.0018   14.2   5.0   36   40-75     12-47  (179)
118 PRK13726 conjugal transfer pil  21.1      63  0.0016   14.4   1.9   22   71-92     59-80  (187)
119 COG4467 Regulator of replicati  20.8      70  0.0018   14.1   4.5   48   41-88     17-64  (114)
120 TIGR01499 folC FolC bifunction  20.7      53  0.0014   14.9   1.4   24   80-103   161-184 (460)
121 pfam05565 Sipho_Gp157 Siphovir  20.5      72  0.0018   14.1   6.1   43   39-87     47-89  (162)
122 cd01401 PncB_like Nicotinate p  20.2      72  0.0018   14.1   2.9   34   71-104   276-311 (377)
123 PRK05431 seryl-tRNA synthetase  20.2      73  0.0019   14.1   7.7   39   40-78     29-67  (422)
124 pfam04065 Not3 Not1 N-terminal  20.2      73  0.0019   14.0   6.1   43   48-91    165-207 (233)
125 COG4768 Uncharacterized protei  20.1      73  0.0019   14.0   9.0   35   40-74     32-66  (139)

No 1  
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=99.78  E-value=4.1e-18  Score=131.73  Aligned_cols=87  Identities=14%  Similarity=0.279  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999999837203999999999999999999999999999999999502799898999999999809878
Q gi|254780671|r   15 IFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSR   94 (105)
Q Consensus        15 ~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~k   94 (105)
                      .+.+++++++++++|.+|||++|+.++..++++++..+++++.++++|+.|..+|..|++   |++++|+.||++|||+|
T Consensus         3 ~l~~~L~~ll~~LQY~lwfg~~g~~~~~~L~~~i~~~~~~n~~L~~~N~~L~~EI~~Lk~---~~~aIE~~AR~eLGmIK   79 (105)
T PRK00888          3 LLTLVLLALLVWLQYPLWFGKNGWLDYHRLNQQVAAQQQTNAKLKARNDQLFAEIDDLKG---GQEAIEERARNELGMVK   79 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHCCCCC
T ss_conf             699999999999999994048969999999999999999999999999999999999877---87999999999869866


Q ss_pred             CCCEEEEECC
Q ss_conf             9868767527
Q gi|254780671|r   95 SDEIILFYSD  104 (105)
Q Consensus        95 p~E~iii~~d  104 (105)
                      |||++|.+.|
T Consensus        80 ~gE~fy~~v~   89 (105)
T PRK00888         80 PGETFYRIVP   89 (105)
T ss_pred             CCCEEEEECC
T ss_conf             9987888579


No 2  
>pfam04977 DivIC Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.
Probab=99.71  E-value=8.1e-17  Score=123.79  Aligned_cols=79  Identities=28%  Similarity=0.382  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             99999999983720399999999999999999999999999999999950279989899999999980987898687675
Q gi|254780671|r   23 CVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIILFY  102 (105)
Q Consensus        23 ~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp~E~iii~  102 (105)
                      ++++++|++|+|++|+.++.++++++..++++++.++++|+.|+.+|..|++   |||++|++||++|||++|||++|.+
T Consensus         1 l~~~l~~~~~~g~~g~~~~~~l~~~i~~l~~~~~~l~~~n~~L~~ei~~L~~---d~~~ie~~AR~~lg~~~~gE~v~~v   77 (80)
T pfam04977         1 LLLLFQYLLIFGVGGLSAYYQLNQEIAALQAELAKLKAENEELEAEVKDLKS---DPDYIEERARSELGLVKPGETIYRV   77 (80)
T ss_pred             CCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             9044527773048879999999999999999999999999999999998508---9999999999985983899889971


Q ss_pred             CC
Q ss_conf             27
Q gi|254780671|r  103 SD  104 (105)
Q Consensus       103 ~d  104 (105)
                      +|
T Consensus        78 ~~   79 (80)
T pfam04977        78 VE   79 (80)
T ss_pred             CC
T ss_conf             68


No 3  
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=99.70  E-value=3.8e-16  Score=119.67  Aligned_cols=101  Identities=23%  Similarity=0.349  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             96249898677999999999999999999998372039999999999999999999999999999999995027998989
Q gi|254780671|r    1 MWTKYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKD   80 (105)
Q Consensus         1 m~tk~~r~~~~~~~~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d   80 (105)
                      ||++++.++...+.++..+++.+..+|+|++|+|..|+.++..+..+++..+++++.|.+++..|+.+|+.|+++   .|
T Consensus        12 ~~~~~~~~~~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg---~~   88 (117)
T COG2919          12 KATRQGERRVRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG---RD   88 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HH
T ss_conf             999998872778999999999999999999999870599999999999999999999987899999999870353---78


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             999999998098789868767527
Q gi|254780671|r   81 LLDEKARYSLNLSRSDEIILFYSD  104 (105)
Q Consensus        81 ~lEe~aR~~Lg~~kp~E~iii~~d  104 (105)
                      |+|+.||..|||++|||++|.+++
T Consensus        89 ~i~e~AR~~l~~~~~gEi~f~i~~  112 (117)
T COG2919          89 YIEERARSELGMSKPGEIFFRLVK  112 (117)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECC
T ss_conf             999999998288889987787153


No 4  
>TIGR02209 ftsL_broad cell division protein FtsL; InterPro: IPR011922    This entry represents FtsL, both forms similar to that in Escherichia coli and similar to that in Bacillus subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent , .; GO: 0007049 cell cycle, 0051301 cell division, 0016021 integral to membrane.
Probab=97.90  E-value=0.00026  Score=47.39  Aligned_cols=60  Identities=17%  Similarity=0.242  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             9999999999999999999999999999999950279989899999999980987898687675
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIILFY  102 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp~E~iii~  102 (105)
                      .+.+.+..++...+.+.+.+++++..|.-|+..|.+    +.=|+++|++.|||-.|+.-.-++
T Consensus        24 ~~~r~~~~e~~~~~~~~~~~~~e~~~L~lE~~~L~~----~~Ri~~iA~~~L~m~~~~~~~~~~   83 (85)
T TIGR02209        24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR----HERIEKIAKKQLGMKLPDANIKVV   83 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf             999999999999999999999999989999986014----889999999865899876554010


No 5  
>pfam04999 FtsL Cell division protein FtsL. In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein pfam04977, however this interaction may be indirect.
Probab=97.06  E-value=0.01  Score=37.60  Aligned_cols=56  Identities=16%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf             999999999999999999999999999999995027998989999999998098789868
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEI   98 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp~E~   98 (105)
                      ..++.+-.+.+.++.+-..|+.+-..|.-|-..|.+    +.-+|.+||++|||..|+-.
T Consensus        35 h~~R~l~~~l~~l~~e~~~L~~ew~~L~LEqstla~----~~RIe~~A~~~L~M~~P~~~   90 (97)
T pfam04999        35 HQTRQLTSELQKLLQERDRLEIEWGNLLLEQSTLAE----HSRVERIAREQLGMKRPDPE   90 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHCCCCCCCCCC
T ss_conf             998999999999999999999999999999998614----76799999864799999987


No 6  
>PRK10772 cell division protein FtsL; Provisional
Probab=95.92  E-value=0.16  Score=30.24  Aligned_cols=59  Identities=15%  Similarity=0.096  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC---CEEEE
Q ss_conf             9999999999999999999999999999999950279989899999999980987898---68767
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSD---EIILF  101 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp~---E~iii  101 (105)
                      ...+.+-.+...+..+-+.|+.|=..|.-|-+.|.+    ..=+|..|+++|||.+|+   |++++
T Consensus        58 H~TR~l~~e~e~L~~erd~Ld~EW~nL~LEqstl~~----hsRIE~~A~~~L~M~~pdp~qEviVv  119 (121)
T PRK10772         58 HHTRLLTAQREQLVLERDALDIEWRNLILEENALGD----HSRVERIATEKLQMQHVDPSQENIVV  119 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf             898999988999999999999999999999986221----65899999985598369941044653


No 7  
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=95.49  E-value=0.24  Score=29.24  Aligned_cols=53  Identities=15%  Similarity=0.125  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             999999999999999999999999999999950279989899999999980987898
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSD   96 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp~   96 (105)
                      ..+.+-.+...+..+-+.++.|=..|.-|-+.|.    |..=+|++||+.|+|-.|+
T Consensus        44 ~tRqL~~e~~~~~~er~~L~~EwrnLilEe~tl~----~hsRVe~iAreqL~M~~pd   96 (105)
T COG3116          44 HTRQLIAELEQLVLERDALNIEWRNLILEENTLG----DHSRVESIAREQLKMKHPD   96 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCC
T ss_conf             9999998758999999998759998898887534----5778999999984677898


No 8  
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=94.25  E-value=0.51  Score=27.20  Aligned_cols=58  Identities=19%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             999999999999999999999999999999995027998989999999998098789868767
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIILF  101 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp~E~iii  101 (105)
                      .+..+.+.++..++..+++-+.++..++.+|..|.+    |+=+=++|- +.||.-.||-|=+
T Consensus        60 ~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss----~eRIldiAk-k~gLkl~~~NVkv  117 (120)
T COG4839          60 TKAYQVQGEITDLESKISEQKTENDDLKQEVKDLSS----PERILDIAK-KAGLKLNNENVKV  117 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHH-HCCCCCCCCCCHH
T ss_conf             999999769999999999998430069999998456----889999998-7566678764200


No 9  
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family; InterPro: IPR014243    This entry represents a set of transcription factors found in some endospore-forming bacteria within the Firmicutes (low-GC Gram-positive bacteria). In some species these proteins are encoded multiple times. The best characterised protein in this entry is the prespore-specific transcription factor RsfA from Bacillus subtilis, previously known as YwfN. Expression of RsfA is controlled by sigma factor F, and it seems to improve the efficiency of sporulation by fine-tuning the expression of genes in the sigma F regulon, particularly the timing of their expression . It also negatively regulates spoIIR and its own synthesis. A paralog in B. subtilis is designated YlbO, though its function is not known. A highly variable linker region separates two very strongly conserved sequence regions within the protein. .
Probab=91.17  E-value=1.4  Score=24.55  Aligned_cols=53  Identities=15%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999983720399999999999999999999999999999999950279
Q gi|254780671|r   20 AFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        20 ~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      +.=-++.|.=++   ..+..+...++.+...+..++..|..+|+.|+.++..|...
T Consensus        83 Tl~~VI~FLq~~---~~~~~~~~~l~~E~~~L~~~~~~Lq~~ne~L~~el~~L~~~  135 (163)
T TIGR02894        83 TLQDVISFLQNL---KTTNPSDQALQKENERLKKELESLQKRNEELEKELEKLEKR  135 (163)
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             878899999998---88779999999899999999999999999999999999998


No 10 
>pfam05137 PilN Fimbrial assembly protein (PilN).
Probab=89.08  E-value=2.1  Score=23.49  Aligned_cols=82  Identities=21%  Similarity=0.362  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC---C
Q ss_conf             89867799999999999999999999837203999999----99999999---99999999999999999995027---9
Q gi|254780671|r    6 YKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKS----LEKSLIER---ERFLSELKENRSRLERKVKLMSD---G   75 (105)
Q Consensus         6 ~r~~~~~~~~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~----l~~~~~~~---~~~l~~l~~~~~~L~~~i~~L~~---~   75 (105)
                      .+++.+..+++.++++++++.+..+.+. ++.+.....    +..++..+   -++++.++++.+.+..+++.+++   +
T Consensus        13 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~i~~q~~~~~~L~~ei~~L~~~i~ei~~l~~~~~~l~~r~~~i~~Lq~~   91 (162)
T pfam05137        13 QRKRRFLTLLLLVVVAGVLLAFAGWLYL-DNQIEAQQERNAFLRTQIQQLDGQLKEIQALKQERQALLERMKKIQELQQN   91 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999999999999-999999999999999999999999999999999999999999999999971


Q ss_pred             CCC-HHHHHHHHHH
Q ss_conf             989-8999999999
Q gi|254780671|r   76 SLE-KDLLDEKARY   88 (105)
Q Consensus        76 ~~D-~d~lEe~aR~   88 (105)
                      ... ...++++++-
T Consensus        92 r~~~~~ll~~L~~~  105 (162)
T pfam05137        92 RPQTVRVFDELARL  105 (162)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             82689999999875


No 11 
>pfam07407 Seadorna_VP6 Seadornavirus VP6 protein. This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=88.65  E-value=0.77  Score=26.12  Aligned_cols=41  Identities=15%  Similarity=0.220  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999995027998989999999
Q gi|254780671|r   46 KSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKA   86 (105)
Q Consensus        46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~a   86 (105)
                      .+++.++.+.++|+++|+.|..+|.+|.+++...|.+|++-
T Consensus        32 delaalreenaklkkenealktkihrlesdwttsdivekie   72 (420)
T pfam07407        32 DELAALREENAKLKKENEALKTKIHRLESDWTTSDIVEKIE   72 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99898887645565452888766754414661677888888


No 12 
>pfam11853 DUF3373 Protein of unknown function (DUF3373). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=87.26  E-value=1.7  Score=24.06  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999999502
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      +-..+.++|+.+++++++|+++...+..+++.-.
T Consensus        25 ~d~~~~qkI~~L~~ql~eLk~~~~~~~~~v~~~e   58 (485)
T pfam11853        25 ADIDLLQKIEALKKELAELKAQLKDLNKRVDKTE   58 (485)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4344999999999999999999998776655566


No 13 
>pfam08961 DUF1875 Domain of unknown function (DUF1875). The MIT domain, found in Nuclear receptor-binding factor 2, has no known function.
Probab=86.81  E-value=2.1  Score=23.44  Aligned_cols=57  Identities=12%  Similarity=0.168  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999999999999999999999999999502799------898999999999809878986
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGS------LEKDLLDEKARYSLNLSRSDE   97 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~------~D~d~lEe~aR~~Lg~~kp~E   97 (105)
                      .....+++...-+-++++.|+.+|.+|..+..||..+.      +|.|++|.-  +--|+-.|+|
T Consensus       129 T~IadLkr~Ve~LvaeNerLrkENkqL~AekaRL~k~p~eKeldvDaDfvekS--ELW~L~~~se  191 (243)
T pfam08961       129 TKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGPIEKELDVDADFVETS--ELWVLPQHNE  191 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHH--HHCCCCCCCC
T ss_conf             77999999999998600999998888868998875185032115640145666--6506899864


No 14 
>pfam06005 DUF904 Protein of unknown function (DUF904). This family consists of several bacterial and archaeal hypothetical proteins of unknown function.
Probab=85.17  E-value=3.5  Score=22.12  Aligned_cols=53  Identities=19%  Similarity=0.199  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999999999999999999999502799898999999999809878
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSR   94 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~k   94 (105)
                      -...-++.++..++.+...+..+|..|..+...|+.   +.+.-.+..|.-||-..
T Consensus        18 dtI~lLqmEieeLke~n~~l~~~~~~L~~EN~qLk~---e~~~wq~rLr~lLgk~~   70 (72)
T pfam06005        18 DTIALLQMEIEELKEENDQLSEENEELEEENKKLKE---ERNAWQSRLRALLGKLD   70 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC
T ss_conf             999999999999997788899878999999999998---99999999999985131


No 15 
>PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional
Probab=83.17  E-value=4.2  Score=21.60  Aligned_cols=51  Identities=12%  Similarity=0.068  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999983720399999999999999999999999999999999950
Q gi|254780671|r   20 AFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        20 ~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      ..+++++|+.  -++..+...-.++.+++++.+.+++..+++....=.+...|
T Consensus        12 vGiiIG~~~~--R~~~~~~~~q~~Le~eLe~~k~el~~Yr~ev~~HF~~tA~L   62 (134)
T PRK11677         12 VGIIIGAVAM--RFGNRKLRQQQALQYELEKNKAELEEYRQELVDHFARSAEL   62 (134)
T ss_pred             HHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999--98175116799999999999999999999999999999999


No 16 
>pfam03245 Phage_lysis Bacteriophage lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database.
Probab=81.97  E-value=4.7  Score=21.32  Aligned_cols=49  Identities=10%  Similarity=0.062  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999502799898999999999
Q gi|254780671|r   38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARY   88 (105)
Q Consensus        38 l~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~   88 (105)
                      -......+.+..+...++......+..++.++..+..  +|.-|-+|.+..
T Consensus        25 ~~~a~~~k~q~~~~~~~l~~~~a~i~~~q~r~r~la~--LD~k~tkEL~~A   73 (151)
T pfam03245        25 RDNADTAERQRDQATAELALANATIEDMQTRQRDLAA--LDAKHTKELADA   73 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_conf             8779999999999999999999799999999999999--978999999988


No 17 
>pfam11382 DUF3186 Protein of unknown function (DUF3186). This bacterial family of proteins has no known function.
Probab=81.34  E-value=5  Score=21.18  Aligned_cols=57  Identities=11%  Similarity=0.104  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             999999999999999999999999999999502799898999999999809878986876752
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIILFYS  103 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp~E~iii~~  103 (105)
                      ...+..+...++++.+.|+.+++.++.+++...      +|++..+..-+.=.-.|..|-++.
T Consensus        34 ~~~l~~~~~~Lr~e~~~l~~~~~~l~~~~~~~d------~f~~~~~p~lv~g~L~g~~Valv~   90 (307)
T pfam11382        34 LSGLEDEFSDLRTENDRLRAEREALNEQASAAD------QFIAALAPRLVAGRLTGKSVALVR   90 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             878888999999999999999999999999999------999998899973754897599997


No 18 
>pfam12097 DUF3573 Protein of unknown function (DUF3573). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=79.90  E-value=5.5  Score=20.88  Aligned_cols=31  Identities=13%  Similarity=0.194  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999995027
Q gi|254780671|r   44 LEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...+....++++.+|+++...|+.+|..|++
T Consensus        33 ~~~s~~~~~~~i~~Lq~QI~~Lq~eIn~l~~   63 (375)
T pfam12097        33 QTDSNQIDKKDISKLQKQIKSLQAQINHLEE   63 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2748775388999999999999999987775


No 19 
>PRK09039 hypothetical protein; Validated
Probab=77.76  E-value=6.4  Score=20.48  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999995027
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ++.+++.+++++...+..-+.++..|+.++..|++
T Consensus        54 ~L~~L~~qia~L~~~L~Ler~~~~~L~~~l~~L~~   88 (343)
T PRK09039         54 ALDRLNAQIAELADLLSLERQGNQDLQDSVAQLRA   88 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999987656554569999999999


No 20 
>pfam08936 CsoSCA Carboxysome Shell Carbonic Anhydrase. Carboxysome Shell Carbonic Anhydrase is a bacterial carbonic anhydrase localized in the carboxysome, where it converts bicarbonate ions to carbon dioxide for use in carbon fixation. It contains three domains, these being: (1) an N-terminal domain composed primarily of four alpha-helices; (2) a catalytic domain containing a tightly bound zinc ion and (3) a C-terminal domain with weak structural similarity to the catalytic domain.
Probab=76.66  E-value=6.9  Score=20.29  Aligned_cols=53  Identities=17%  Similarity=0.266  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHCCCCCCCE
Q ss_conf             99999999999999999999999999995027998989999---999998098789868
Q gi|254780671|r   43 SLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLD---EKARYSLNLSRSDEI   98 (105)
Q Consensus        43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lE---e~aR~~Lg~~kp~E~   98 (105)
                      ..++.+...+.+++.-=....-+-++|..++.   +||++|   ++||++||+--|..+
T Consensus         7 ~~N~~L~~yE~~vk~rFd~Ivp~Lk~isa~Qh---~~dF~~~AQ~la~~~LGf~LP~~i   62 (459)
T pfam08936         7 EANERLQDYEREVKGRFDRIVPVLKEISALQH---EPDFVERAQQLARAELGFDLPEHI   62 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf             89999999999999887777899999874236---765899999999997589984889


No 21 
>pfam06305 DUF1049 Protein of unknown function (DUF1049). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=76.21  E-value=7.1  Score=20.22  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             39999999999999999999999999999
Q gi|254780671|r   37 GLKANKSLEKSLIERERFLSELKENRSRL   65 (105)
Q Consensus        37 Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L   65 (105)
                      ++..+.+.+.++..++++++.++++.+.+
T Consensus        51 ~~~~~l~~r~~~r~l~k~lk~l~~e~~~l   79 (80)
T pfam06305        51 SLPFYLRLRRRLRRLKKQLKKLEKELEQL   79 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999998846


No 22 
>pfam02183 HALZ Homeobox associated leucine zipper.
Probab=73.73  E-value=8.2  Score=19.84  Aligned_cols=35  Identities=11%  Similarity=0.150  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999995027
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      .|.-+++....+..+...|..+|..|..++..|++
T Consensus         6 Dy~~LK~~yd~Lk~~~~~L~~e~~~L~ae~~~L~~   40 (45)
T pfam02183         6 DYEVLKRCYDALKAENDSLQKENEKLRAEVLSLKE   40 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999988999988899999999999999999998


No 23 
>pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=73.54  E-value=3.8  Score=21.85  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             498986779999999999999999999983720
Q gi|254780671|r    4 KYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDY   36 (105)
Q Consensus         4 k~~r~~~~~~~~~~~~~~~~~~~f~~~~~~g~~   36 (105)
                      |+||.+. ...+.+++.++++++.+|.++++..
T Consensus         8 k~Rk~n~-vLNiaI~iV~llIiiva~~lf~~~~   39 (214)
T pfam07423         8 KRRKINR-VLNIAIGIVVVLIIIVAYQLFFPSS   39 (214)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHEEECCC
T ss_conf             7764534-5579999999999997664023588


No 24 
>KOG4797 consensus
Probab=72.12  E-value=9  Score=19.60  Aligned_cols=45  Identities=20%  Similarity=0.222  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             9999999999999999999999999999995027998989999999
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKA   86 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~a   86 (105)
                      ....+.+.+.++.++.+|.+.|..|+++-..|++.. -||-+.+.-
T Consensus        62 mfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~-spe~L~ql~  106 (123)
T KOG4797          62 MFAVREEVEVLKEQIRELEERNSALERENSLLKTLA-SPEQLAQLP  106 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHH
T ss_conf             999999999999999999999999999878998508-999999988


No 25 
>pfam08537 NBP1 Fungal Nap binding protein NBP1. NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae to be essential for the G2/M transition of the cell cycle.
Probab=70.63  E-value=9.7  Score=19.39  Aligned_cols=42  Identities=29%  Similarity=0.471  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             99999999999999999-------9999999999999502799898999999
Q gi|254780671|r   41 NKSLEKSLIERERFLSE-------LKENRSRLERKVKLMSDGSLEKDLLDEK   85 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~-------l~~~~~~L~~~i~~L~~~~~D~d~lEe~   85 (105)
                      +.++..++.+++++|..       .++.|..|+   ..|.+.++|++|+.-.
T Consensus       175 i~~le~kl~e~~~EL~~tqkkL~f~qEKn~LLe---sLLDdaNId~~YvKSR  223 (313)
T pfam08537       175 IDKLEEKLAELEQELQSTQKKLQFVKEKNHLLE---SLLDDANIDDEYVKSR  223 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCCHHHHHHH
T ss_conf             999999999999999999999998999999999---9730235778988777


No 26 
>KOG4571 consensus
Probab=69.22  E-value=10  Score=19.21  Aligned_cols=47  Identities=9%  Similarity=-0.026  Sum_probs=26.4

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             9999-9999999999999999999999999995027998989999999998
Q gi|254780671|r   40 ANKS-LEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYS   89 (105)
Q Consensus        40 ~~~~-l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~   89 (105)
                      +|++ .+.+-+.+..+++.|+.+|.+|..+...|...   -+|+-+..++.
T Consensus       241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE---I~ylKqli~e~  288 (294)
T KOG4571         241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE---IRYLKQLILEV  288 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_conf             9999989999888878777888779999999999999---99999999999


No 27 
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; InterPro: IPR014345   Members of this entry belong to the family of polysaccharide chain length determinant proteins. They are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the epsH homologue that is the putative exosortase gene..
Probab=68.95  E-value=10  Score=19.22  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999999999999999950279
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      -|.+++.++++++++++.|+...+.++.+|.+|++.
T Consensus       323 vyQql~~~l~~~eA~~asl~~r~~~~~~~~~~l~~~  358 (510)
T TIGR03007       323 VYQQLQIELAEAEAEIASLEARVAELTARIERLESL  358 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             137789999999999999999999999999999999


No 28 
>pfam01166 TSC22 TSC-22/dip/bun family.
Probab=67.55  E-value=11  Score=19.00  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             99999999999999999999999999999502799898999999
Q gi|254780671|r   42 KSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEK   85 (105)
Q Consensus        42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~   85 (105)
                      ...+.+.+.++..+.+|..++.+|+.+-..|++.. -||-+++.
T Consensus        10 ~AVREEVevLk~~I~eL~~~~~~le~EN~~Lk~~~-spe~l~ql   52 (57)
T pfam01166        10 YAVREEVEVLKEQIKELEEKNSQLERENTLLKSLA-SPEQLEQL   52 (57)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_conf             99999999999999999999999999999998609-99999999


No 29 
>pfam07106 TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP). This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation.
Probab=66.54  E-value=12  Score=18.88  Aligned_cols=50  Identities=20%  Similarity=0.205  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             99999999999999999999999999999999950279989899999999
Q gi|254780671|r   38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKAR   87 (105)
Q Consensus        38 l~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR   87 (105)
                      --....+..++..++.++..++.+...++.+...|.+.....++.++++.
T Consensus        71 ~eel~~~d~~i~~L~~~l~~l~~~~~~l~~el~~L~s~~t~eel~~~i~~  120 (169)
T pfam07106        71 DEELNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDLTTEELQEEIQE  120 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             88998769999999999999999999999999998758999999999999


No 30 
>pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=61.32  E-value=15  Score=18.28  Aligned_cols=49  Identities=14%  Similarity=0.078  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999983720399999999999999999999999999999999950
Q gi|254780671|r   22 CCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        22 ~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      +++++++.  -++..+...-.++.+++++.+.+++..+++....=.+...|
T Consensus        10 ~iiG~~~~--R~~~~~~~~q~~Le~eLe~~k~el~~Y~~ev~~HF~~tA~L   58 (128)
T pfam06295        10 LIIGLIIM--RLTNPTYKNQKKIKKELEEAKEELDEQRQELKDHFAQSAEL   58 (128)
T ss_pred             HHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999--97274076899999999999999999999999999999999


No 31 
>pfam04111 APG6 Autophagy protein Apg6. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway.
Probab=60.34  E-value=15  Score=18.17  Aligned_cols=45  Identities=13%  Similarity=0.075  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             999999999999999999999999999999950279989899999
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDE   84 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe   84 (105)
                      .+..+.++...+.+++..++++.+.+..++..|.......+.-|+
T Consensus        71 el~~l~~ee~~l~~eL~~le~e~~~l~~el~~le~e~~~l~~ee~  115 (356)
T pfam04111        71 ELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEEL  115 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999999


No 32 
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=59.70  E-value=16  Score=18.11  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999999995027
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ..+....++++..+.++.....+...|+.+++.+..
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~   73 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLET   73 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             889989999999999999999999999999999998


No 33 
>pfam09889 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=58.86  E-value=15  Score=18.27  Aligned_cols=29  Identities=17%  Similarity=0.125  Sum_probs=15.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             62498986779999999999999999999
Q gi|254780671|r    2 WTKYYKKNHFFRAIFLVIAFCCVVYFTNH   30 (105)
Q Consensus         2 ~tk~~r~~~~~~~~~~~~~~~~~~~f~~~   30 (105)
                      |.+.+|+-...+.+++.+++++++++.+.
T Consensus        28 ~~~~rkk~~~~q~i~f~i~il~i~v~~~~   56 (59)
T pfam09889        28 YRKKRKKMRKSQQILFGIFILFLAVYAVL   56 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999998


No 34 
>pfam10883 DUF2681 Protein of unknown function (DUF2681). This family of proteins with unknown function appears to be restricted to Haemophilus spp.
Probab=57.54  E-value=17  Score=17.88  Aligned_cols=48  Identities=15%  Similarity=0.164  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999998372039999999999999999999999999999999995
Q gi|254780671|r   17 LVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKL   71 (105)
Q Consensus        17 ~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~   71 (105)
                      .+++.+++.+-+|..|       ....-+++++.+.++.+.|+.+..--+.+++-
T Consensus         6 ~a~a~~v~l~~gYv~~-------~l~ka~~~~~kL~~qNeQLqtEKaVAetQVKn   53 (78)
T pfam10883         6 LAFAVAVVLLVGYVYY-------RLRQAQRRIEKLQKENEQLQTEKAVAETQVKH   53 (78)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999-------99999999999999899999999999999888


No 35 
>KOG4603 consensus
Probab=57.38  E-value=17  Score=17.86  Aligned_cols=48  Identities=15%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             999999999999999999999999999999995027998989999999
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKA   86 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~a   86 (105)
                      -....+.-.+..+++....+.++....+.+|..|++.-.-|++.|+++
T Consensus        79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~  126 (201)
T KOG4603          79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQ  126 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             899988679999999999999898889999999998637499999999


No 36 
>pfam10211 Ax_dynein_light Axonemal dynein light chain. Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains.
Probab=54.76  E-value=19  Score=17.60  Aligned_cols=47  Identities=19%  Similarity=0.356  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             39999999999999999999999999999999995027998989999999
Q gi|254780671|r   37 GLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKA   86 (105)
Q Consensus        37 Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~a   86 (105)
                      |+-+-..-.+....++++++.|+.++..|+.++.-|+..   -+.+|..+
T Consensus       111 g~RKal~~e~~k~~l~~~i~~Le~e~~~Le~~v~el~~k---~e~~ekr~  157 (189)
T pfam10211       111 GMRKALKAEQGKSELEQEIKKLEEEKEELEKEVAELEAK---LEEIEKRE  157 (189)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_conf             889999887276889999999999999999999999999---99999879


No 37 
>pfam07716 bZIP_2 Basic region leucine zipper.
Probab=54.42  E-value=19  Score=17.57  Aligned_cols=34  Identities=18%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ....+.....++.+...|..+|..|..+|..|..
T Consensus        20 R~rkk~~~~~le~~~~~L~~eN~~L~~~i~~L~~   53 (54)
T pfam07716        20 REKKKQREEELEERVKELERENAQLRQKIEQLEK   53 (54)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999999999999999754


No 38 
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=52.08  E-value=21  Score=17.34  Aligned_cols=47  Identities=23%  Similarity=0.167  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999999999999999999999999999502799898999999999809878
Q gi|254780671|r   44 LEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSR   94 (105)
Q Consensus        44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~k   94 (105)
                      .-.+...+.++++.|++++..|+.+...+..    ...=-+..|+-|++..
T Consensus        60 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~----l~~En~~Lr~lL~~~~  106 (264)
T PRK13922         60 NVSSLFDLREENEELKEELLLLESRLLELEQ----LKQENARLRELLGLKE  106 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_conf             9987999999999999999999999999999----9999999999872222


No 39 
>pfam05377 FlaC_arch Flagella accessory protein C (FlaC). Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells).
Probab=52.07  E-value=18  Score=17.71  Aligned_cols=45  Identities=16%  Similarity=0.289  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q ss_conf             999999999999999999999999999950279989-899999999
Q gi|254780671|r   43 SLEKSLIERERFLSELKENRSRLERKVKLMSDGSLE-KDLLDEKAR   87 (105)
Q Consensus        43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D-~d~lEe~aR   87 (105)
                      ++.+++..+...+..++++++.+...+..+.++-.| .+..|-+.|
T Consensus         4 elEn~~~~l~~~i~t~~~en~~i~~~ie~i~envk~v~~lYEvVS~   49 (55)
T pfam05377         4 ELENKLPKISSMVSTVRKENEELSEEVEKIDENVKDVLSLYEVVSN   49 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8886758899999989988999999999999999999999999981


No 40 
>KOG0483 consensus
Probab=50.89  E-value=22  Score=17.22  Aligned_cols=49  Identities=20%  Similarity=0.186  Sum_probs=39.4

Q ss_pred             HHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999983720-399999999999999999999999999999999950279
Q gi|254780671|r   27 FTNHAIVGDY-GLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        27 f~~~~~~g~~-Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      -+..+||-++ .-++..++..+...++..+..+..++..|+.++..|+..
T Consensus        92 RQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~  141 (198)
T KOG0483          92 RQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAE  141 (198)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68999984013100104355568999999988733216788889999998


No 41 
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=50.40  E-value=13  Score=18.59  Aligned_cols=39  Identities=8%  Similarity=0.001  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999983720399999999999999999
Q gi|254780671|r   13 RAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERF   54 (105)
Q Consensus        13 ~~~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~   54 (105)
                      +.++.+++++++++-++.++.   .+..+.+-.+..+++++.
T Consensus         3 ~~ii~iv~l~Vf~~s~~~l~~---~~~~y~~~~~~~~~~~~~   41 (232)
T TIGR03064         3 KKSITLLFLIVFFYSLYKLGQ---IFYDYYTNRQVLAEAQQV   41 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf             688999999999999999999---998876636999999988


No 42 
>pfam00170 bZIP_1 bZIP transcription factor. The Pfam entry includes the basic region and the leucine zipper region.
Probab=50.21  E-value=23  Score=17.15  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ....+..+..++.+...|..+|..|..++..|+.
T Consensus        16 R~RKk~~~~~Le~~v~~L~~eN~~L~~~~~~L~~   49 (59)
T pfam00170        16 RLRKKAYIEELEEKVKELEAENKTLRSELERLKK   49 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999


No 43 
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.20  E-value=23  Score=17.15  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999502
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      +..+..+..+++.++..++.++..|+.++.+|+
T Consensus        11 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~   43 (390)
T PRK03992         11 EEQLESRNEELEEQLRDLEAENERLERELERLK   43 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 44 
>pfam08172 CASP_C CASP C terminal. This domain is the C-terminal region of the CASP family of proteins. It is a Golgi membrane protein which is thought to have a role in vesicle transport.
Probab=50.04  E-value=23  Score=17.14  Aligned_cols=50  Identities=24%  Similarity=0.250  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999999999999999950279989899999999980987
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLS   93 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~   93 (105)
                      +-+.++...++++++..+.++...|+.++..|+.+   ---|=|..|..=.|-
T Consensus        88 RDRFr~Rn~ELE~elr~~~~~~~~l~~ev~~L~~D---N~kLYEK~RylqsY~  137 (245)
T pfam08172        88 RDRFRKRNTELEEELRKLNQTISSLRQELASLKAD---NIKLYEKIRYLQSYN  137 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999999999999988---899999999886056


No 45 
>pfam03518 consensus
Probab=49.54  E-value=23  Score=17.09  Aligned_cols=45  Identities=9%  Similarity=0.120  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             99999999999999999999999999999950279989899999999
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKAR   87 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR   87 (105)
                      |-..-+...........++++.+.+.++.+.|+++  ||.|-.-.+-
T Consensus         9 ~~~~~~~~~~ad~k~~~~~kK~n~~q~~l~~l~P~--dP~y~k~~~~   53 (349)
T pfam03518         9 YEAQIKKLDNADSKIDAAAKKINQAQNKLQELDPA--DPEKAKAEAA   53 (349)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHH
T ss_conf             99998842016688999999999999887558999--9306899989


No 46 
>KOG4196 consensus
Probab=49.54  E-value=23  Score=17.09  Aligned_cols=37  Identities=30%  Similarity=0.440  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999999995027
Q gi|254780671|r   38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        38 l~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      +....++..+...+.++++.|..++..+..+.+.+++
T Consensus        73 v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~  109 (135)
T KOG4196          73 VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS  109 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9889999999999999999999999999999999999


No 47 
>pfam11119 DUF2633 Protein of unknown function (DUF2633). This family is conserved largely in the Bacillaceae family. Several members are named as YfgG. The function is not known.
Probab=49.48  E-value=18  Score=17.69  Aligned_cols=29  Identities=14%  Similarity=0.157  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             49898677999999999999999999998
Q gi|254780671|r    4 KYYKKNHFFRAIFLVIAFCCVVYFTNHAI   32 (105)
Q Consensus         4 k~~r~~~~~~~~~~~~~~~~~~~f~~~~~   32 (105)
                      |.++.....++++++.++++++=|+|.++
T Consensus         2 r~r~~~~mt~iVLLISFiilFgRl~Y~aI   30 (59)
T pfam11119         2 RRKKNGRMTKIVLLISFIIFFGRLIYSAI   30 (59)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97766612568999999999999999877


No 48 
>TIGR02976 phageshock_pspB phage shock protein B; InterPro: IPR009554   This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages . Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one ..
Probab=48.31  E-value=24  Score=16.97  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999995027
Q gi|254780671|r   50 ERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        50 ~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      .-.+.|++|.++-+.|+++|+-|..
T Consensus        39 ~d~~~L~~L~~~A~Rl~~Ri~tLE~   63 (75)
T TIGR02976        39 DDLQLLQELYAKADRLEERIDTLER   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999899999999999


No 49 
>KOG3705 consensus
Probab=47.57  E-value=25  Score=16.90  Aligned_cols=81  Identities=10%  Similarity=0.158  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHH
Q ss_conf             9999999999999999999837203999999999999999999999999999999999502799-898-99999999980
Q gi|254780671|r   13 RAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGS-LEK-DLLDEKARYSL   90 (105)
Q Consensus        13 ~~~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~-~D~-d~lEe~aR~~L   90 (105)
                      .++.++++.+.+.||.+.-+..++|--.  .-.+.+.+..+.++.++++|++|..-++.|+.+. +|. ..++..-+-+=
T Consensus        13 ~li~~v~aW~tl~~~~~~~L~n~q~~~~--~s~R~~sq~l~~le~l~qqNEdLk~~~e~lr~~~~~d~~~am~~v~~Le~   90 (580)
T KOG3705          13 ALITVVLAWMTLFLFLYSQLSNNQSQGG--DSIRAWSQTLEALEKLQQQNEDLKSILEKLRQERNDDHKKAMEQVHQLEP   90 (580)
T ss_pred             HHHHHHHHHHHHHHHHHEEECCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf             9999999999998763002103688876--31899999999999998751899999999725235413568888761888


Q ss_pred             CCCCC
Q ss_conf             98789
Q gi|254780671|r   91 NLSRS   95 (105)
Q Consensus        91 g~~kp   95 (105)
                      ...+|
T Consensus        91 ~~~np   95 (580)
T KOG3705          91 NPENP   95 (580)
T ss_pred             CCCCC
T ss_conf             86786


No 50 
>pfam03980 Nnf1 Nnf1. NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is associated with the spindle poles and forms part of a kinetochore subcomplex called MIND.
Probab=46.95  E-value=25  Score=16.84  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      +..+..+...+...+..++.+|..|..+|..++.
T Consensus        74 ~~~~~~~~~~L~~~L~~~~~eN~~L~~~v~~~r~  107 (108)
T pfam03980        74 VPYLLKQLDELDAKLQKIQAENAALADEIQALRE  107 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             7789999999999999999999999999986534


No 51 
>KOG0642 consensus
Probab=46.40  E-value=26  Score=16.79  Aligned_cols=55  Identities=13%  Similarity=-0.011  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999999999999999999999999950279989899999999980987898
Q gi|254780671|r   42 KSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSD   96 (105)
Q Consensus        42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp~   96 (105)
                      ..+..+.++++++++.|+.|+..+++....|+....=++|--+.-|.+....++|
T Consensus        37 ~~WElERaElqariAfLqgErk~qenlk~dl~rR~kmlE~~lkeerak~~~lq~g   91 (577)
T KOG0642          37 ARWELERAELQARIAFLQGERKGQENLKMDLVRRIKMLEFALKEERAKYNKLQPG   91 (577)
T ss_pred             HHEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf             5122125567788998740102068889999998752430367764343103645


No 52 
>KOG3335 consensus
Probab=46.39  E-value=22  Score=17.24  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999995027
Q gi|254780671|r   48 LIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        48 ~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      .+..+.++.+|+.+...|+++|..++.
T Consensus       101 ee~~~~e~~elr~~~~~l~~~i~~~~~  127 (181)
T KOG3335         101 EEKRKQEIMELRLKVEKLENAIAELTK  127 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             799999999999999999999999999


No 53 
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.70  E-value=27  Score=16.72  Aligned_cols=49  Identities=16%  Similarity=0.184  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027998989999999998098
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNL   92 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~   92 (105)
                      .-+++...+.+..+...+...++.|+.+-..|++.   ...--+..|.-||-
T Consensus        27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e---~~~WQerlrsLLGk   75 (79)
T COG3074          27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEE---QNGWQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_conf             99999875177788888898799999888999989---97799999998710


No 54 
>KOG0999 consensus
Probab=44.81  E-value=27  Score=16.64  Aligned_cols=53  Identities=21%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999950279989899999999980
Q gi|254780671|r   38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSL   90 (105)
Q Consensus        38 l~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~L   90 (105)
                      +.+..++..++.+++.++...+.+|+.+......+.+++-+.+.--...|.++
T Consensus       106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~~~~~~~E~qR~rlr~el  158 (772)
T KOG0999         106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDEL  158 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999998877899999998776302104588998999999


No 55 
>KOG0288 consensus
Probab=44.48  E-value=28  Score=16.61  Aligned_cols=46  Identities=15%  Similarity=0.186  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             999999999999999999999999999999502799898999999999
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARY   88 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~   88 (105)
                      +-.+..|...++++...+.+.-...|.++.+|+.++  .+..|+..|+
T Consensus        29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~--~~l~e~~v~~   74 (459)
T KOG0288          29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEEN--TQLNEERVRE   74 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_conf             999988899999989999999888899999999988--8888999988


No 56 
>pfam03962 Mnd1 Mnd1 family. This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair.
Probab=44.11  E-value=28  Score=16.57  Aligned_cols=36  Identities=11%  Similarity=0.220  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             99999999999999999999950279989899999999
Q gi|254780671|r   50 ERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKAR   87 (105)
Q Consensus        50 ~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR   87 (105)
                      .+-.+++.|+.++..|..+...++..  ||+.+++.-+
T Consensus       107 ~ll~~l~~l~~~~~~L~~el~~~~~~--Dp~~i~~~~~  142 (188)
T pfam03962       107 ELLEELKQLEKELKKLKAELEKYEKN--DPERIEKLKE  142 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
T ss_conf             99999999999999999999998836--9999999999


No 57 
>KOG0994 consensus
Probab=43.64  E-value=29  Score=16.53  Aligned_cols=50  Identities=18%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999999999999999999950----279989899999999980987898
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLM----SDGSLEKDLLDEKARYSLNLSRSD   96 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L----~~~~~D~d~lEe~aR~~Lg~~kp~   96 (105)
                      -..+..+-...+++.|++|++-|..+    ....-|||-++++|-+.|++--|-
T Consensus      1455 ~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~ 1508 (1758)
T KOG0994        1455 ALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPL 1508 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999988889988889999999999999874088999799999999998532789


No 58 
>pfam09851 DUF2078 Predicted membrane protein (DUF2078). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.48  E-value=18  Score=17.80  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999983720399999999999999999999999999999999950
Q gi|254780671|r   12 FRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        12 ~~~~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      ...++.++.+++++++.+..+.+.++-.....-+.-.+.++++++.=+-+.++.+++.+.|
T Consensus        11 ~~~i~~~lli~~vv~l~~~~~~~~~~~~~~~~~~~al~IL~eRyArGEI~eeEy~~rk~~L   71 (73)
T pfam09851        11 LMLLFWLLLIAGVVYLLVRLFGGTRGRSDSPPDSDALEILKERYARGEIDEEEYEERKKDL   71 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             9999999999999999999970789889998876899999999865898999999999886


No 59 
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.18  E-value=29  Score=16.49  Aligned_cols=65  Identities=18%  Similarity=0.163  Sum_probs=40.0

Q ss_pred             HHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH---HHHHHHCCC
Q ss_conf             999837203999-9999999999999999999999999999995027-9989899999---999980987
Q gi|254780671|r   29 NHAIVGDYGLKA-NKSLEKSLIERERFLSELKENRSRLERKVKLMSD-GSLEKDLLDE---KARYSLNLS   93 (105)
Q Consensus        29 ~~~~~g~~Gl~~-~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~-~~~D~d~lEe---~aR~~Lg~~   93 (105)
                      +..|-++....+ -..+..++...+++...|..+.+.++++++..+. ..-|...+|.   ..|...|++
T Consensus        39 ~q~~k~~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v  108 (247)
T COG3879          39 FQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSV  108 (247)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             8512685032235668999989999999999999999999998877767769999999999998885557


No 60 
>KOG1103 consensus
Probab=42.92  E-value=29  Score=16.46  Aligned_cols=62  Identities=21%  Similarity=0.270  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHCCCCCCCEE
Q ss_conf             203999999999999999999999999999999999502799898999999999---80987898687
Q gi|254780671|r   35 DYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARY---SLNLSRSDEII   99 (105)
Q Consensus        35 ~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~---~Lg~~kp~E~i   99 (105)
                      ++|+..-.++..++.+...+-+.|+.+.+..+++-+.|++.   -+.+-+++|.   .+-+.+|||.+
T Consensus       234 erglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeE---meSLkeiVkdlEA~hQh~~pNeqL  298 (561)
T KOG1103         234 ERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEE---MESLKEIVKDLEADHQHLRPNEQL  298 (561)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             63230378899999999899999999988777788899999---999999986156666633843003


No 61 
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937    Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12).     Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , .   More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=42.55  E-value=30  Score=16.43  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999999999999999999999999950279
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      ..+..|+.+...++.+-..++.|...|..|+++|++.
T Consensus         6 ~~ir~Le~~~~~le~e~~~l~~E~~~lr~E~~rlr~P   42 (364)
T TIGR01242         6 ERIRKLEDEKKLLEKEKIRLERELERLRSEIERLRSP   42 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999888888878877778999999999999984589


No 62 
>smart00338 BRLZ basic region leucin zipper.
Probab=42.03  E-value=30  Score=16.38  Aligned_cols=34  Identities=18%  Similarity=0.347  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ....+..+..++.++..|..+|..|..++..|+.
T Consensus        21 R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~   54 (65)
T smart00338       21 RERKKAEIEELERKVEQLEAENERLKKEIERLRR   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999


No 63 
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.00  E-value=31  Score=16.28  Aligned_cols=10  Identities=40%  Similarity=0.621  Sum_probs=4.6

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999998
Q gi|254780671|r   80 DLLDEKARYS   89 (105)
Q Consensus        80 d~lEe~aR~~   89 (105)
                      +.++++||..
T Consensus       101 ~~l~~raRAm  110 (265)
T COG3883         101 ELLKKRARAM  110 (265)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 64 
>PRK11415 hypothetical protein; Provisional
Probab=40.87  E-value=32  Score=16.27  Aligned_cols=54  Identities=11%  Similarity=0.115  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999999995027998--989999999998098
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSL--EKDLLDEKARYSLNL   92 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~--D~d~lEe~aR~~Lg~   92 (105)
                      ..|+++-.++....+.-..|=.+-++|.++|..|..++.  .++.+|..-+++|.+
T Consensus         3 pEyRdLIs~LK~~d~hF~~LF~kHneLD~eI~~lE~~~~~~~~~eve~LKkeKL~L   58 (74)
T PRK11415          3 PEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQL   58 (74)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             07899999985138689999999878889999985788899828999999999852


No 65 
>pfam06103 DUF948 Bacterial protein of unknown function (DUF948). This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=40.87  E-value=32  Score=16.27  Aligned_cols=58  Identities=17%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999998372039999999999999999999999999999999995027
Q gi|254780671|r   15 IFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        15 ~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...++++++++.|.....-.  --....++++-+..++++.+.+..|-+.|-++.+.|-+
T Consensus         4 ~i~AiAf~vLvi~l~~~L~~--~~~tl~~~~~Ti~~l~~~vd~i~~et~~lL~ktN~L~~   61 (90)
T pfam06103         4 LIIAIAFLVLVIFLIKTLKS--LSKTLDEVNKTLAGLTKQVDGITTETEDLLAKTNVLLE   61 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999--99999999999999998789899999999998888999


No 66 
>pfam12269 zf-CpG_bind_C CpG binding protein zinc finger C terminal domain. This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=38.06  E-value=35  Score=16.00  Aligned_cols=49  Identities=18%  Similarity=0.242  Sum_probs=42.6

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             8372039999999999999999999999999999999995027998989
Q gi|254780671|r   32 IVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKD   80 (105)
Q Consensus        32 ~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d   80 (105)
                      +.+++|...+-++.++....+..|++|...-..|+.-|.+.++-.+|++
T Consensus        22 ~A~e~~~~~Le~Ir~kq~~~~~~L~eLe~~~~eL~~iI~rak~~~~~~~   70 (236)
T pfam12269        22 VAEEIGKKALERIRKKQQVARTRLQELERRHQELETIISRAKRLTVDEN   70 (236)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             4244557999999999999999999999999999999998862245433


No 67 
>pfam07926 TPR_MLP1_2 TPR/MLP1/MLP2-like protein. The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Probab=37.71  E-value=35  Score=15.96  Aligned_cols=29  Identities=34%  Similarity=0.525  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999950
Q gi|254780671|r   44 LEKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      +..++..++..+..|..+|..|...|..|
T Consensus       103 le~E~~~l~~r~edL~~QN~lLh~Qie~l  131 (132)
T pfam07926       103 LEDELSELEKRIEELNEQNKLLHDQIELL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999988999999999999997645


No 68 
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.03  E-value=36  Score=15.90  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999999999502
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      ....+++.++..+-.+++.|+-+|..|...+..+.
T Consensus        22 ~e~~~LK~~~~~l~EEN~~L~iEN~~Lre~l~~~~   56 (107)
T PRK13169         22 KELGALKQQLAELLEENTALRLENEKLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999988999999999999999875


No 69 
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696    Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=36.96  E-value=30  Score=16.36  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999999999950279
Q gi|254780671|r   46 KSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      .+......++..|..+...|+.-+..+.+|
T Consensus        98 ~~~~~~~~q~~~L~~q~~~L~~l~~Si~~g  127 (476)
T TIGR01000        98 NQKQELEQQLDNLKDQKKSLDTLKESIENG  127 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             789999999999999999999999864348


No 70 
>pfam06156 DUF972 Protein of unknown function (DUF972). This family consists of several hypothetical bacterial sequences. The function of this family is unknown.
Probab=36.57  E-value=37  Score=15.85  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999950
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      ...+++.++..+-.+++.|+-+|..|..++..+
T Consensus        23 el~~LK~~~~~l~EEN~~L~iEN~~Lr~~l~~~   55 (106)
T pfam06156        23 ELGELKQQLAELLEENAELRIENEHLRERLEEL   55 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999998899999999999999988


No 71 
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=36.31  E-value=37  Score=15.83  Aligned_cols=36  Identities=11%  Similarity=0.065  Sum_probs=18.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             249898677999999999999999999998372039
Q gi|254780671|r    3 TKYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGL   38 (105)
Q Consensus         3 tk~~r~~~~~~~~~~~~~~~~~~~f~~~~~~g~~Gl   38 (105)
                      |-.++|++..+..+.++.+++++.+..++..|+..+
T Consensus         4 ~~~~~~~rr~~~~l~~L~~ll~~~~~~sL~~G~~~i   39 (330)
T PRK03784          4 TLARQQQRRNRRWLLCLSVLLLLALLLSLCAGEQWI   39 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             799998765889999999999999999996388137


No 72 
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=36.09  E-value=37  Score=15.81  Aligned_cols=34  Identities=21%  Similarity=0.411  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             9999999999999999999999999502799898999999
Q gi|254780671|r   46 KSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEK   85 (105)
Q Consensus        46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~   85 (105)
                      .+...++.+...|++||+.|.-+|+.|-      |++.+.
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKievLl------DMLtet  105 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIEVLL------DMLAET  105 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_conf             7888888898999998869999999999------998887


No 73 
>PTZ00234 variable surface protein Vir12; Provisional
Probab=35.64  E-value=6.3  Score=20.52  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89867799999999999999999999837203999999---------99999999999999999999999999
Q gi|254780671|r    6 YKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKS---------LEKSLIERERFLSELKENRSRLERKV   69 (105)
Q Consensus         6 ~r~~~~~~~~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~---------l~~~~~~~~~~l~~l~~~~~~L~~~i   69 (105)
                      ...+.++|.++++++++-+++|.|..--+ .|+-....         -.+-.++.++||..-..|++.|+.+.
T Consensus       358 ~LdSNffRNIIMaaAILGtIfFLFYYN~S-S~lkS~~~KrKrKKk~~ehNYYeEYEkEL~~Y~Se~~~ldSq~  429 (433)
T PTZ00234        358 ILKSEYFRHSIVGASIIGVLVFLFFFFKS-TPIRSQTNKGEKKKRKPQNNYYDEYEEELPRYESQQSLAESQM  429 (433)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHEECC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCC
T ss_conf             00018999999999999999998630036-6643457876666676543238999876035652000001100


No 74 
>pfam05103 DivIVA DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.
Probab=35.42  E-value=38  Score=15.74  Aligned_cols=35  Identities=9%  Similarity=0.169  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999995027
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...++..-+.....++..|..+|..|..++..|..
T Consensus        19 d~~EVD~FLd~va~e~e~l~~en~~L~~~~~~l~~   53 (131)
T pfam05103        19 DPDEVDEFLDQVIKDYEALYKENEELKEEIERLEE   53 (131)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999


No 75 
>pfam06447 consensus
Probab=35.37  E-value=39  Score=15.73  Aligned_cols=22  Identities=9%  Similarity=0.246  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999950
Q gi|254780671|r   51 RERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        51 ~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      .+++++.|.+++.+|.++++.+
T Consensus        88 ~q~~l~~l~qe~~~L~~q~~~~  109 (407)
T pfam06447        88 NQERIASLEQENQQLREQLAAG  109 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999999999999988


No 76 
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=34.59  E-value=24  Score=17.04  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=16.0

Q ss_pred             HHHHHHHCCCCCCCEEEEECC
Q ss_conf             999998098789868767527
Q gi|254780671|r   84 EKARYSLNLSRSDEIILFYSD  104 (105)
Q Consensus        84 e~aR~~Lg~~kp~E~iii~~d  104 (105)
                      |-+.-.|||++|.++++..+.
T Consensus        36 EA~HGDLGMv~~~Dvvl~ISY   56 (272)
T TIGR00393        36 EALHGDLGMVEPRDVVLLISY   56 (272)
T ss_pred             HHCCCCCCCCCCCCEEEEEEC
T ss_conf             450364357586747999876


No 77 
>pfam11855 DUF3375 Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=34.53  E-value=40  Score=15.65  Aligned_cols=42  Identities=26%  Similarity=0.427  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999502799---8989999999998098
Q gi|254780671|r   51 RERFLSELKENRSRLERKVKLMSDGS---LEKDLLDEKARYSLNL   92 (105)
Q Consensus        51 ~~~~l~~l~~~~~~L~~~i~~L~~~~---~D~d~lEe~aR~~Lg~   92 (105)
                      -...++.|+.++.+++++|.++..|-   +|++-+.+.+|.-+.+
T Consensus       139 p~~Ri~~L~~e~~~i~~EI~~l~aG~v~~ld~~q~~er~~~i~~l  183 (471)
T pfam11855       139 PEARLAELEREIDELDAEIDRLEAGDVPLLDDTQVRERFRQILDL  183 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999999999999999877998889878999999999999


No 78 
>pfam06936 Selenoprotein_S Selenoprotein S (SelS). This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. The function of this family is unknown.
Probab=33.92  E-value=41  Score=15.59  Aligned_cols=18  Identities=11%  Similarity=0.379  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999983
Q gi|254780671|r   16 FLVIAFCCVVYFTNHAIV   33 (105)
Q Consensus        16 ~~~~~~~~~~~f~~~~~~   33 (105)
                      .++++.++++|+++.-+.
T Consensus        38 WyiL~~~v~ly~l~qkL~   55 (190)
T pfam06936        38 WYLLLGCVGIYLLIQKLR   55 (190)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             799999999999999871


No 79 
>KOG2895 consensus
Probab=32.78  E-value=34  Score=16.06  Aligned_cols=43  Identities=12%  Similarity=0.013  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999998372039999999999999999999999999999999
Q gi|254780671|r   21 FCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERK   68 (105)
Q Consensus        21 ~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~   68 (105)
                      +++++.|+++.|.|..=++.-...     ..++|.+.++++-+..+..
T Consensus       346 ~Fl~l~f~wavwNGasyyidv~gr-----r~~~e~e~l~q~lqp~~~~  388 (408)
T KOG2895         346 IFLILKFSWAVWNGASYYIDVMGR-----RVIQEEEKLKQELQPIEEQ  388 (408)
T ss_pred             HHHHHHHHHHHCCCCEEEHHHHHH-----HHHHHHHHHHHHCCCCHHH
T ss_conf             999999888511783665465348-----9999999998763897464


No 80 
>pfam05833 FbpA Fibronectin-binding protein A N-terminus (FbpA). This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host.
Probab=32.67  E-value=43  Score=15.46  Aligned_cols=45  Identities=22%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             9999999999999999999999999999999502799898999999
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEK   85 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~   85 (105)
                      +|.++++....++.+++..+++.+.|+.-...|.. ..|++-++++
T Consensus       380 kykK~K~~~~~~~~~l~~~~~el~yLe~~~~~l~~-a~~~~~l~eI  424 (447)
T pfam05833       380 KYKKLKRAVEAVEEQIEETKEEIEYLESVEAQLEN-AESLEDLEEI  424 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_conf             99999888999999999999999999999999985-6999999999


No 81 
>pfam07047 OPA3 Optic atrophy 3 protein (OPA3). This family consists of several optic atrophy 3 (OPA3) proteins. OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity.
Probab=31.34  E-value=45  Score=15.33  Aligned_cols=27  Identities=26%  Similarity=0.212  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999502
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      ..+..+++++.|+.+...|+.+++.++
T Consensus       106 Kee~~~~~l~~L~~~i~~L~~~~e~~~  132 (134)
T pfam07047       106 KEEELQQELEELEQRVEELELEVERQK  132 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999999999999885


No 82 
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=31.05  E-value=45  Score=15.30  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHH
Q ss_conf             999999999950279989-89999
Q gi|254780671|r   61 NRSRLERKVKLMSDGSLE-KDLLD   83 (105)
Q Consensus        61 ~~~~L~~~i~~L~~~~~D-~d~lE   83 (105)
                      .++.+..+++.|+.-..| |++.+
T Consensus        85 a~~~~~~~~~~l~~l~~d~p~~~~  108 (207)
T COG5278          85 ATEELDQKLEELRALTADDPELLE  108 (207)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999999999999876389889999


No 83 
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273   This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=30.33  E-value=27  Score=16.65  Aligned_cols=13  Identities=15%  Similarity=0.250  Sum_probs=10.8

Q ss_pred             CCCCCCEEEEECC
Q ss_conf             8789868767527
Q gi|254780671|r   92 LSRSDEIILFYSD  104 (105)
Q Consensus        92 ~~kp~E~iii~~d  104 (105)
                      .++|||.++++.|
T Consensus       107 ~v~pGek~v~vED  119 (205)
T TIGR01367       107 EVKPGEKVVVVED  119 (205)
T ss_pred             EECCCCEEEEEEE
T ss_conf             3369977999962


No 84 
>PRK10998 malG maltose transporter permease; Provisional
Probab=30.18  E-value=47  Score=15.21  Aligned_cols=28  Identities=14%  Similarity=0.120  Sum_probs=14.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9624989867799999999999999999
Q gi|254780671|r    1 MWTKYYKKNHFFRAIFLVIAFCCVVYFT   28 (105)
Q Consensus         1 m~tk~~r~~~~~~~~~~~~~~~~~~~f~   28 (105)
                      |+..++|++++.+++..++++++.+++.
T Consensus         1 m~~~~~k~~~~~~~~~y~~li~~~~~~l   28 (296)
T PRK10998          1 MAMVQPKSQKLRLFITHLLLLCFIAAIM   28 (296)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9866642167999999999999999999


No 85 
>PRK12705 hypothetical protein; Provisional
Probab=29.63  E-value=48  Score=15.15  Aligned_cols=14  Identities=21%  Similarity=0.230  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254780671|r   49 IERERFLSELKENR   62 (105)
Q Consensus        49 ~~~~~~l~~l~~~~   62 (105)
                      .+..++...+++++
T Consensus        49 ~~a~ke~~~~r~e~   62 (485)
T PRK12705         49 ANAYKKAKDLKEQN   62 (485)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 86 
>KOG4643 consensus
Probab=29.06  E-value=49  Score=15.09  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      |-.+.++...+.+.+..++.+|+.|..+|..|+.
T Consensus       525 ye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643         525 YELLSNKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998779999999876478777999999999998


No 87 
>pfam03131 bZIP_Maf bZIP Maf transcription factor. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Thus, this family is probably related to pfam00170.
Probab=28.25  E-value=51  Score=15.00  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999999995027
Q gi|254780671|r   38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        38 l~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      +.....+..+...+..+++.|..+++.+..+.+.++.
T Consensus        52 ~~q~~~LE~e~~~L~~e~e~Lk~E~~~~~~E~d~~k~   88 (95)
T pfam03131        52 VQQRHELEKEKSQLQQQVEQLKQENARLRRERDALKA   88 (95)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999


No 88 
>PRK09458 pspB phage shock protein B; Provisional
Probab=27.30  E-value=53  Score=14.90  Aligned_cols=37  Identities=14%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999----99999999999999999999995027
Q gi|254780671|r   38 LKANKSLEKSL----IERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        38 l~~~~~l~~~~----~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ++.|....+.-    ++-++.+++|...-+.++++|.-|.+
T Consensus        23 iLHY~sk~k~~~~Ls~~d~~~L~~L~~~A~~m~eRI~tLE~   63 (75)
T PRK09458         23 WLHYRSKRQVSQGLSQEEQQRLAQLTEKAEKMRERIQTLEA   63 (75)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99866240246799999999999999999999999999999


No 89 
>COG4499 Predicted membrane protein [Function unknown]
Probab=27.12  E-value=53  Score=14.88  Aligned_cols=74  Identities=16%  Similarity=0.273  Sum_probs=38.5

Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             8986779999---9999999999999999837203999999999999999999999999999999999502799898999
Q gi|254780671|r    6 YKKNHFFRAI---FLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLL   82 (105)
Q Consensus         6 ~r~~~~~~~~---~~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~l   82 (105)
                      +++..+++++   +.++++.+++||.|..++-         ..++.+-..+.-+-|   +.....-|.-|.+  .||.-+
T Consensus       214 K~k~~ifk~~giGliillvl~li~~~Y~~f~~---------~p~qeai~~a~~aFL---~~nY~qVittLe~--ydp~kl  279 (434)
T COG4499         214 KKKYTIFKYFGIGLIILLVLLLIYFTYYYFSN---------QPKQEAIITANTAFL---KNNYDQVITTLEN--YDPEKL  279 (434)
T ss_pred             CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHH---HCCHHHHHHHCCC--CCHHHC
T ss_conf             55511114688869999999999999999971---------726888998899998---5358988630234--891237


Q ss_pred             HHHHHHHHCCC
Q ss_conf             99999980987
Q gi|254780671|r   83 DEKARYSLNLS   93 (105)
Q Consensus        83 Ee~aR~~Lg~~   93 (105)
                      .+-|+..|-.+
T Consensus       280 Pksv~Y~LA~S  290 (434)
T COG4499         280 PKSVQYILAVS  290 (434)
T ss_pred             CHHHHHHHHHH
T ss_conf             68889999887


No 90 
>pfam05384 DegS Sensor protein DegS. This is small family of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterize the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon. The family also contains one sequence from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.
Probab=26.98  E-value=53  Score=14.87  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999950279989899999999980
Q gi|254780671|r   45 EKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSL   90 (105)
Q Consensus        45 ~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~L   90 (105)
                      .++...++.+|..++.+....-.+++.|.       ..+..||.+|
T Consensus        26 R~E~~~l~~EL~evk~~v~~vI~evD~Le-------~~~r~aR~RL   64 (159)
T pfam05384        26 RQEYERLEQELEEVKEEVSEVIKEVDKLE-------KQERRARKRL   64 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_conf             99999999999999999999999999999-------9999999999


No 91 
>pfam10224 DUF2205 Predicted coiled-coil protein (DUF2205). This entry represent a highly conserved 100 residue region which is likely to be a coiled-coil structure. The exact function is unknown.
Probab=26.82  E-value=54  Score=14.85  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             9999999999999999999999999999502799898999999999
Q gi|254780671|r   43 SLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARY   88 (105)
Q Consensus        43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~   88 (105)
                      .++..+..+-.++..++.++..|+.+-.-|+      +||+...+.
T Consensus        27 ~LQ~sL~~l~~Rid~VKeE~dKL~sEN~fLq------~YIgnLms~   66 (81)
T pfam10224        27 ELQDSLQDLSERVDAVKEENDKLESENQFLQ------QYIENLMSA   66 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_conf             9999999999999999999998884508899------999999874


No 92 
>pfam06667 PspB Phage shock protein B. This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one.
Probab=26.52  E-value=54  Score=14.81  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999----99999999999999999999995027
Q gi|254780671|r   38 LKANKSLEKSL----IERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        38 l~~~~~l~~~~----~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ++.|....+.-    ++-++.+++|.+.-+.++++|.-|.+
T Consensus        23 ~LHYrsk~k~~~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~   63 (75)
T pfam06667        23 ILHYRSKWKVSQGLSEEDEQLLEELLETAEKLQERIQTLER   63 (75)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99656023467789999999999999999999999999999


No 93 
>pfam11285 DUF3086 Protein of unknown function (DUF3086). This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.33  E-value=55  Score=14.79  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999999999999999999999999950279
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      .++.++.++...++.+++.|+..++.+++++..==.|
T Consensus         4 ~aL~eL~qrr~aL~~eIe~LErRk~rie~EmrtsFaG   40 (283)
T pfam11285         4 EALKDLEQRRQALEIEIEKLERRKEQIEQELRTSFAG   40 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8999999999999999999999999999999722465


No 94 
>pfam06810 Phage_GP20 Phage minor structural protein GP20. This family consists of several phage minor structural protein GP20 sequences of around 180 residues in length. The function of this family is unknown.
Probab=25.99  E-value=56  Score=14.75  Aligned_cols=35  Identities=26%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCC
Q ss_conf             99999999999999999999---999999999950279
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKE---NRSRLERKVKLMSDG   75 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~---~~~~L~~~i~~L~~~   75 (105)
                      ...++.|+......|..|..   .|+.|..+|..|+..
T Consensus        29 ~~~lk~Ql~~rd~ql~~Lk~~~~d~e~L~~~ie~lq~~   66 (156)
T pfam06810        29 RDSLKKQLKNRDKQIEDLKKKVKDNEELQKKIEKLKQQ   66 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999988999887158889999999999999


No 95 
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=25.44  E-value=57  Score=14.69  Aligned_cols=13  Identities=8%  Similarity=0.314  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999995027
Q gi|254780671|r   62 RSRLERKVKLMSD   74 (105)
Q Consensus        62 ~~~L~~~i~~L~~   74 (105)
                      |..|+..|.+|+.
T Consensus       105 n~~l~~ni~~ln~  117 (779)
T PRK11091        105 NVQLKDNIAQLNQ  117 (779)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8888877888667


No 96 
>pfam05812 Herpes_BLRF2 Herpesvirus BLRF2 protein. This family consists of several Herpesvirus BLRF2 proteins. The family also contains the C terminal region of hypothetical human and mouse sequences, which align with the N terminus of the viral sequences.
Probab=25.44  E-value=57  Score=14.69  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999502
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      ..+++.+++..|+-||..|..++..=.
T Consensus         4 t~EeLaaeL~kL~mENk~LKkkl~~~~   30 (118)
T pfam05812         4 TVEELAAELQKLQMENKALKKKLRQSV   30 (118)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             599999999999987899999998258


No 97 
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726    Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=25.35  E-value=46  Score=15.25  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             9999999999999-99999999950279989899999999980
Q gi|254780671|r   49 IERERFLSELKEN-RSRLERKVKLMSDGSLEKDLLDEKARYSL   90 (105)
Q Consensus        49 ~~~~~~l~~l~~~-~~~L~~~i~~L~~~~~D~d~lEe~aR~~L   90 (105)
                      ...+.....|.+. +..++.-+.+|++-.  .+|||+.||+--
T Consensus        22 ~~~~DVeraL~~~e~~~~~D~~aLlSPaA--~~YLE~mA~~a~   62 (378)
T TIGR02351        22 FTAADVERALNKREHLSLEDFLALLSPAA--EPYLEEMAQKAK   62 (378)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHCCCCC--CHHHHHHHHHHH
T ss_conf             42899999724576789888863114301--068999999999


No 98 
>pfam08285 DPM3 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3). This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex.
Probab=25.24  E-value=58  Score=14.67  Aligned_cols=48  Identities=17%  Similarity=0.127  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             67799999999999999999999837----2039999999999999999999
Q gi|254780671|r    9 NHFFRAIFLVIAFCCVVYFTNHAIVG----DYGLKANKSLEKSLIERERFLS   56 (105)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~f~~~~~~g----~~Gl~~~~~l~~~~~~~~~~l~   56 (105)
                      ..+...+.+-..+.+.+|..+.+-+|    +.-=.++.++++|+.++++.+.
T Consensus        34 ~~ii~~lP~~~lv~fG~Y~l~~vg~~v~tFndcpea~~eL~~eI~eAk~dL~   85 (91)
T pfam08285        34 QEILPLLPFYLLVSFGSYSLGTVGYGVLTFNDCPEAAKELQKEIKEAKADLR   85 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999981699999999999999987441168888999999999999999999


No 99 
>pfam04415 DUF515 Protein of unknown function (DUF515). Family of hypothetical Archaeal proteins.
Probab=25.19  E-value=58  Score=14.66  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCC
Q ss_conf             498986779999999999999999999983720399999999999999999999999-------99999999995027
Q gi|254780671|r    4 KYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKE-------NRSRLERKVKLMSD   74 (105)
Q Consensus         4 k~~r~~~~~~~~~~~~~~~~~~~f~~~~~~g~~Gl~~~~~l~~~~~~~~~~l~~l~~-------~~~~L~~~i~~L~~   74 (105)
                      |.+|++.+...+++++.++++.+-.|..+ ..   .+..++....+..-+++..+=.       +...+.++|..=++
T Consensus        26 rerr~riiIga~il~iIIl~~~~~~Y~~~-~~---~~~qELenaK~~kiaevN~~F~ge~~Nd~~K~~~inkI~~AkS   99 (416)
T pfam04415        26 KERRKRLIIGALVLSVIILLLVFAIYYYI-EN---KAYQELENAKAAKIAEVNALFAGELANDPQKQAYINKIQAANN   99 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             23344100689999999999999999998-72---7789998889988999999853667998588999999885269


No 100
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.78  E-value=59  Score=14.62  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999502
Q gi|254780671|r   44 LEKSLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      +++++..++.+++.+.++....++++..|.
T Consensus        81 lek~l~~l~~~l~~~~~~~~~~q~~l~~l~  110 (474)
T PRK13729         81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLG  110 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999876562899999999


No 101
>pfam08614 ATG16 Autophagy protein 16 (ATG16). Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Probab=24.49  E-value=59  Score=14.58  Aligned_cols=31  Identities=19%  Similarity=0.423  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999502
Q gi|254780671|r   43 SLEKSLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      ++...+......+..+..++..|+.++..+.
T Consensus       106 ~l~~~l~~~~~~l~~l~~~~~~L~~~~~~l~  136 (194)
T pfam08614       106 QLRREIQQLEKTIAELRSEITSLETEIRDLR  136 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999889999999999999999999999


No 102
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.30  E-value=54  Score=14.82  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=19.1

Q ss_pred             CHHHHHHHHHHHHCCCCCCCE
Q ss_conf             989999999998098789868
Q gi|254780671|r   78 EKDLLDEKARYSLNLSRSDEI   98 (105)
Q Consensus        78 D~d~lEe~aR~~Lg~~kp~E~   98 (105)
                      +|.|+++..|+..+|..|.+.
T Consensus       210 hPa~lD~~l~~~s~y~~pR~~  230 (257)
T COG3394         210 HPAFLDETLRDCSSYCEPRLT  230 (257)
T ss_pred             CHHHHHHHHHHCCCCCCCCCH
T ss_conf             689988898851554465530


No 103
>KOG3156 consensus
Probab=23.98  E-value=61  Score=14.52  Aligned_cols=40  Identities=13%  Similarity=0.301  Sum_probs=27.6

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             99999999-9999999999999999999502799898999999999
Q gi|254780671|r   44 LEKSLIER-ERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARY   88 (105)
Q Consensus        44 l~~~~~~~-~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~   88 (105)
                      ++.++... +.+-..++++|+.|.++++++++     ++.+|+-+.
T Consensus       106 iRsel~S~e~sEF~~lr~e~EklkndlEk~ks-----~lr~ei~~~  146 (220)
T KOG3156         106 IRSELVSIERSEFANLRAENEKLKNDLEKLKS-----SLRHEISKT  146 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHC
T ss_conf             99999988888999999889999989999999-----999998741


No 104
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=23.82  E-value=61  Score=14.50  Aligned_cols=15  Identities=13%  Similarity=-0.037  Sum_probs=10.0

Q ss_pred             HHHCCCHHHHHHHHH
Q ss_conf             983720399999999
Q gi|254780671|r   31 AIVGDYGLKANKSLE   45 (105)
Q Consensus        31 ~~~g~~Gl~~~~~l~   45 (105)
                      .|.-++|+..|.+..
T Consensus        32 ~~~f~~~f~~y~~~~   46 (467)
T PRK10549         32 RISFERGFIDYIKHG   46 (467)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999899999998


No 105
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=23.74  E-value=51  Score=15.01  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             89867799999999999999999999837
Q gi|254780671|r    6 YKKNHFFRAIFLVIAFCCVVYFTNHAIVG   34 (105)
Q Consensus         6 ~r~~~~~~~~~~~~~~~~~~~f~~~~~~g   34 (105)
                      ||+..+++.+++++++++++|+.+.....
T Consensus         3 kk~~~~~~~~i~~~~~~~~~~~~~~~~~~   31 (176)
T PRK03147          3 KKNRLLFRTIILLILLAAVGYTLYQNFFA   31 (176)
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             62043999999999999999998616777


No 106
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=23.31  E-value=63  Score=14.44  Aligned_cols=61  Identities=26%  Similarity=0.256  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999983720399-99999999999999999999999999999995027
Q gi|254780671|r   12 FRAIFLVIAFCCVVYFTNHAIVGDYGLK-ANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        12 ~~~~~~~~~~~~~~~f~~~~~~g~~Gl~-~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      -+.+=+++++.++.||+...+-+  .+. +.......+...+..+.+..+.-...+.++...+.
T Consensus        29 ~r~iNf~I~~gIL~yf~~kpi~~--~l~~R~~~I~~~L~eae~~~~eA~~~l~~~~~kLe~Ak~   90 (170)
T PRK08475         29 ERTINFLIFVGILWYFAAKPIKN--FYKSRINSISKRLEEIQAKLKESKEKKKDALKKLEEAKE   90 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999992878999--999899999999999999999999999999999999999


No 107
>PRK04335 cell division protein ZipA; Provisional
Probab=23.30  E-value=63  Score=14.44  Aligned_cols=22  Identities=14%  Similarity=0.324  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999983
Q gi|254780671|r   12 FRAIFLVIAFCCVVYFTNHAIV   33 (105)
Q Consensus        12 ~~~~~~~~~~~~~~~f~~~~~~   33 (105)
                      .+++++++.+++++.+.+|-++
T Consensus         4 LrlILIIvGaIAIiALL~HGlW   25 (319)
T PRK04335          4 LRFVLIVVGALAIAALLFHGLW   25 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             4029999999999999984011


No 108
>KOG3584 consensus
Probab=23.06  E-value=63  Score=14.41  Aligned_cols=27  Identities=15%  Similarity=0.130  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999502
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      -+.-++.+.+.|+.+|..|-+|.+.|+
T Consensus       313 YVKCLENRVAVLENQNKaLIEELKtLK  339 (348)
T KOG3584         313 YVKCLENRVAVLENQNKALIEELKTLK  339 (348)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999887577887514589999999899


No 109
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=22.81  E-value=64  Score=14.38  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=20.6

Q ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             5027998989999999998098789868767527
Q gi|254780671|r   71 LMSDGSLEKDLLDEKARYSLNLSRSDEIILFYSD  104 (105)
Q Consensus        71 ~L~~~~~D~d~lEe~aR~~Lg~~kp~E~iii~~d  104 (105)
                      -++.+|=||..+.+.+|+.|--..-+.+-|+++|
T Consensus       252 GVR~DSGD~~~~~~~~r~~ld~~G~~~~kIv~Sd  285 (327)
T cd01570         252 GVRIDSGDLAYLSKEARKMLDEAGLTKVKIVASN  285 (327)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             7984798879999999999987799997899979


No 110
>pfam10205 KLRAQ Predicted coiled-coil domain-containing protein. This is the N-terminal 100 amino acid domain of a family of proteins conserved from nematodes to humans. It carries a characteristic KLRAQ sequence-motif. The function is not known.
Probab=22.66  E-value=65  Score=14.36  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             9999999999999999999999999999995027998989999
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLD   83 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lE   83 (105)
                      +....+.+...++|.+.|.=.|.+|..++..|++   ++|.-+
T Consensus        35 Lk~keq~lRk~eqE~DsL~FrNqQL~kRV~~LQ~---el~~~~   74 (102)
T pfam10205        35 LKQKEQSLRKTEQEVDSLGFRNKQLERRVELLQE---ELELSE   74 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_conf             9999999999999864452139999999999999---999862


No 111
>KOG3119 consensus
Probab=22.51  E-value=65  Score=14.35  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999502
Q gi|254780671|r   49 IERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        49 ~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      .+...+...|+++|+.|..+|..|+
T Consensus       218 ~e~~~r~~~leken~~lr~~v~~l~  242 (269)
T KOG3119         218 DEMAHRVAELEKENEALRTQVEQLK  242 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999


No 112
>TIGR02977 phageshock_pspA phage shock protein A; InterPro: IPR014319   Members of this protein are the phage shock protein PspA, from the phage shock operon. PspA appears to maintain the proton motive force under stress conditions that include over expression of certain phage secretins, heat shock, ethanol and protein export defects..
Probab=21.97  E-value=67  Score=14.28  Aligned_cols=48  Identities=17%  Similarity=0.238  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999950279989899999999980
Q gi|254780671|r   38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSL   90 (105)
Q Consensus        38 l~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~L   90 (105)
                      |.........+..+..++..+......+..+|..|+.     -+-|-.||.+.
T Consensus        91 L~EK~K~~~~~~~L~~E~~~~~e~l~~~~~di~~Lq~-----KL~eArarQka  138 (222)
T TIGR02977        91 LIEKQKAAELAEALEQELAAVEETLAKLQEDIAKLQA-----KLAEARARQKA  138 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_conf             9999999999999999999999999998989999999-----98889999999


No 113
>pfam03100 CcmE CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Probab=21.85  E-value=67  Score=14.26  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8677999999999999999999998
Q gi|254780671|r    8 KNHFFRAIFLVIAFCCVVYFTNHAI   32 (105)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~f~~~~~   32 (105)
                      ++.+...++.++++++.+++++.++
T Consensus         5 ~kRl~~i~~~~~~~~~~~~Lil~al   29 (130)
T pfam03100         5 KRRLLLVLAALAALGLAVALVLYAL   29 (130)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2454789999999999999999987


No 114
>pfam09340 NuA4 Histone acetyltransferase subunit NuA4. The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control.
Probab=21.58  E-value=68  Score=14.23  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             9999999999999999999999995027998989999
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLD   83 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lE   83 (105)
                      ++.++-..-..|+.+-..||.+|..+.+     +|++
T Consensus         3 ~L~~ll~kK~~Le~~L~~lE~qIY~~Et-----~YL~   34 (80)
T pfam09340         3 KLKELLQKKKKLEKELAALERQIYDKET-----EYLE   34 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
T ss_conf             8999999999999999999999999999-----9983


No 115
>pfam00952 Bunya_nucleocap Bunyavirus nucleocapsid (N) protein. The bunyaviruses are enveloped viruses with a genome consisting of 3 ssRNA segments (called L, M and S). The nucleocapsid protein is encode on the small (S) genomic RNA. The N protein is the major component of the nucleocapsids. This protein is thought to interact with the L protein, virus RNA and/or other N proteins.
Probab=21.48  E-value=41  Score=15.56  Aligned_cols=29  Identities=7%  Similarity=0.176  Sum_probs=21.9

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             99502799898999999999809878986
Q gi|254780671|r   69 VKLMSDGSLEKDLLDEKARYSLNLSRSDE   97 (105)
Q Consensus        69 i~~L~~~~~D~d~lEe~aR~~Lg~~kp~E   97 (105)
                      |.+-+.+.-||.|+++..|.++|=..+++
T Consensus       159 iyRV~k~~Mdp~fl~K~lRQRYggl~A~~  187 (228)
T pfam00952       159 MYRVQKDGMDVNFLEKVLRQRYGGLTAEQ  187 (228)
T ss_pred             EEEEHHCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf             53202137597999999999847998899


No 116
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.19  E-value=69  Score=14.18  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHH
Q ss_conf             999999999999999999-950279989899999
Q gi|254780671|r   52 ERFLSELKENRSRLERKV-KLMSDGSLEKDLLDE   84 (105)
Q Consensus        52 ~~~l~~l~~~~~~L~~~i-~~L~~~~~D~d~lEe   84 (105)
                      +..++.|++++..|..+. .+|.....++||+|.
T Consensus        64 ~~~l~~lk~~i~~L~~~k~~LL~~~Gyp~DYLe~   97 (330)
T PRK06835         64 EEELESLKEKITDLRVKKSELLVSNGYPPDYLEM   97 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf             8999999999999999999999985999565578


No 117
>pfam08941 USP8_interact USP8 interacting. This domain interacts with the UBP deubiquitinating enzyme USP8.
Probab=21.17  E-value=69  Score=14.18  Aligned_cols=36  Identities=14%  Similarity=0.202  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999999999999999950279
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      +..+++++....+.++.+.+.|.+-++.=+..|+..
T Consensus        12 ~i~elk~~~~~q~~~ineqkREleLlq~YirAlR~t   47 (179)
T pfam08941        12 EIAELKHTQVDHEIQINEQKRELELLKYYIRALRST   47 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999999999999999999999707


No 118
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=21.14  E-value=63  Score=14.43  Aligned_cols=22  Identities=23%  Similarity=0.228  Sum_probs=14.7

Q ss_pred             HHCCCCCCHHHHHHHHHHHHCC
Q ss_conf             5027998989999999998098
Q gi|254780671|r   71 LMSDGSLEKDLLDEKARYSLNL   92 (105)
Q Consensus        71 ~L~~~~~D~d~lEe~aR~~Lg~   92 (105)
                      -.++++.|++|+|+.+|.-+.+
T Consensus        59 ~vS~~~~d~~YLe~Ma~~~~~L   80 (187)
T PRK13726         59 AVSQNSADASYLQQMALSFIAL   80 (187)
T ss_pred             EEECCCCCHHHHHHHHHHHHHH
T ss_conf             9857867989999999999987


No 119
>COG4467 Regulator of replication initiation timing [Replication,    recombination, and repair]
Probab=20.81  E-value=70  Score=14.13  Aligned_cols=48  Identities=17%  Similarity=0.076  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             999999999999999999999999999999502799898999999999
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARY   88 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~   88 (105)
                      ...+-+++..+++.+.++-.+|..|.-+-..|+.---+|...+..+-+
T Consensus        17 l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k   64 (114)
T COG4467          17 LGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKK   64 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
T ss_conf             999999999999999999876589886578999985773211124420


No 120
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645   Folylpolyglutamate synthase 6.3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes.   FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see ).   A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process.
Probab=20.70  E-value=53  Score=14.86  Aligned_cols=24  Identities=21%  Similarity=0.118  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             999999999809878986876752
Q gi|254780671|r   80 DLLDEKARYSLNLSRSDEIILFYS  103 (105)
Q Consensus        80 d~lEe~aR~~Lg~~kp~E~iii~~  103 (105)
                      |-++++|+++.|-+|||.-+++-.
T Consensus       161 ~t~~~IA~eKAGI~k~g~P~v~~~  184 (460)
T TIGR01499       161 DTLEEIAWEKAGIIKEGVPIVTGE  184 (460)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             337999997457621676568714


No 121
>pfam05565 Sipho_Gp157 Siphovirus Gp157. This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophages. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage.
Probab=20.47  E-value=72  Score=14.09  Aligned_cols=43  Identities=30%  Similarity=0.401  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             9999999999999999999999999999999950279989899999999
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKAR   87 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR   87 (105)
                      ....++..++....++...|.......++++.+|+      +|+...--
T Consensus        47 ~~iknlea~~~~~k~e~krl~erkk~~enk~~~LK------~yl~~~m~   89 (162)
T pfam05565        47 KVIKNLEADIEAIKAEIKRLAERKKSIENKVKRLK------DYLEEAME   89 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_conf             99983297899999999999999999998999999------99999999


No 122
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=20.25  E-value=72  Score=14.06  Aligned_cols=34  Identities=21%  Similarity=0.047  Sum_probs=21.9

Q ss_pred             HHCCCCCCHHHHHHHHHHHHCCC--CCCCEEEEECC
Q ss_conf             50279989899999999980987--89868767527
Q gi|254780671|r   71 LMSDGSLEKDLLDEKARYSLNLS--RSDEIILFYSD  104 (105)
Q Consensus        71 ~L~~~~~D~d~lEe~aR~~Lg~~--kp~E~iii~~d  104 (105)
                      -.+-+|=||-++-+.+|+.+.=.  .|.-.+|+++|
T Consensus       276 GVRlDSGDl~~~~~~~r~~~d~~G~~~~~k~iv~S~  311 (377)
T cd01401         276 GVRHDSGDPFEWGEKAIAHYEKLGIDPKTKTLVFSD  311 (377)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             885378678999999999999779895762899918


No 123
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.19  E-value=73  Score=14.05  Aligned_cols=39  Identities=15%  Similarity=0.159  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999999999999999999999999999950279989
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLE   78 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D   78 (105)
                      ...++..+...++.+++.|+++.+.+..+|..++....|
T Consensus        29 ~il~lD~~rr~l~~e~e~Lr~erN~iSK~Ig~~kk~g~~   67 (422)
T PRK05431         29 ELLELDEERRELQTETEELQAERNALSKEIGQAKAKGED   67 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999999999999999999999998748977


No 124
>pfam04065 Not3 Not1 N-terminal domain, CCR4-Not complex component.
Probab=20.19  E-value=73  Score=14.05  Aligned_cols=43  Identities=26%  Similarity=0.446  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999502799898999999999809
Q gi|254780671|r   48 LIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLN   91 (105)
Q Consensus        48 ~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg   91 (105)
                      +..++..+...+-....|+.=...|.++.+||+-++++ ++.+-
T Consensus       165 ~~~l~~~~erh~~Hi~kLE~llr~L~N~~l~~e~v~~i-kedie  207 (233)
T pfam04065       165 IAELEELLERHKFHISKLELILRLLENGELDPEQVDDI-KEDIE  207 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHH
T ss_conf             99999999999999999999999988599999999998-88899


No 125
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=20.13  E-value=73  Score=14.04  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999995027
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...+..+-++.++.+.+.+..+-+.|-++.+.|.+
T Consensus        32 tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~e   66 (139)
T COG4768          32 TLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAE   66 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999877778878999999989999


Done!