Query gi|254780671|ref|YP_003065084.1| putative cell division protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 105 No_of_seqs 100 out of 686 Neff 7.1 Searched_HMMs 23785 Date Tue May 31 17:38:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780671.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1rz2_A Conserved hypothetical 78.5 1.3 5.6E-05 23.3 3.0 34 1-34 1-35 (254) 2 2w6a_A ARF GTPase-activating p 65.8 7.4 0.00031 18.8 5.8 42 33-74 7-48 (63) 3 1dh3_A Transcription factor CR 59.5 9.6 0.0004 18.1 5.4 34 41-74 17-50 (55) 4 2wg5_A General control protein 55.0 9.2 0.00039 18.2 3.3 30 46-75 7-36 (109) 5 1zhc_A Hypothetical protein HP 54.7 9.9 0.00042 18.0 3.5 53 40-92 4-56 (76) 6 1go4_E MAD1 (mitotic arrest de 54.3 12 0.00049 17.6 5.6 33 40-72 13-45 (100) 7 3lay_A Zinc resistance-associa 54.2 12 0.0005 17.5 8.0 47 43-89 75-122 (175) 8 2dgc_A Protein (GCN4); basic d 54.1 12 0.0005 17.5 5.3 34 41-74 25-58 (63) 9 3kin_B Kinesin heavy chain; mo 52.1 13 0.00054 17.3 5.5 34 41-74 84-117 (117) 10 1nkp_A C-MYC, MYC proto-oncoge 51.1 13 0.00056 17.2 5.5 34 41-74 54-87 (88) 11 1gk7_A Vimentin; intermediate 50.9 13 0.00056 17.2 5.1 34 39-72 6-39 (39) 12 2jee_A YIIU; FTSZ, septum, coi 50.8 13 0.00056 17.2 5.2 47 42-91 30-76 (81) 13 2yy0_A C-MYC-binding protein; 47.5 15 0.00063 16.9 4.3 30 40-69 20-49 (53) 14 1hjb_A Ccaat/enhancer binding 47.2 15 0.00064 16.9 5.1 34 41-74 31-64 (87) 15 1a93_B MAX protein, coiled coi 46.9 15 0.00065 16.8 4.7 28 45-72 6-33 (34) 16 3mq7_A Bone marrow stromal ant 46.2 16 0.00067 16.8 4.3 28 47-74 72-99 (121) 17 1ci6_A Transcription factor AT 42.7 18 0.00075 16.4 6.1 44 41-87 18-61 (63) 18 2wuj_A Septum site-determining 42.7 18 0.00075 16.4 4.7 34 41-74 22-55 (57) 19 2aze_B Transcription factor E2 42.6 15 0.00064 16.9 2.8 34 41-74 8-41 (106) 20 1t2k_D Cyclic-AMP-dependent tr 42.5 18 0.00076 16.4 4.8 33 42-74 18-50 (61) 21 2xdj_A Uncharacterized protein 41.5 19 0.00079 16.3 5.5 36 40-75 21-56 (83) 22 3iyn_Q Protein IX, PIX, hexon- 41.4 19 0.00079 16.3 4.2 36 40-75 99-134 (140) 23 1gu4_A CAAT/enhancer binding p 39.1 20 0.00086 16.1 5.6 33 42-74 32-64 (78) 24 1nkp_B MAX protein, MYC proto- 38.4 21 0.00088 16.0 5.2 33 41-73 49-81 (83) 25 2dq3_A Seryl-tRNA synthetase; 38.0 21 0.00089 16.0 4.3 41 39-79 30-70 (425) 26 2ve7_C Kinetochore protein NUF 35.8 23 0.00097 15.8 4.2 41 35-75 137-177 (250) 27 1jnm_A Proto-oncogene C-JUN; B 35.7 23 0.00097 15.8 5.1 32 43-74 19-50 (62) 28 1ihq_A Chimeric peptide glytm1 34.7 24 0.001 15.7 3.9 27 48-74 7-33 (38) 29 2wt7_A Proto-oncogene protein 33.2 25 0.0011 15.5 5.2 33 42-74 19-51 (63) 30 2wt7_B Transcription factor MA 33.0 26 0.0011 15.5 5.6 33 42-74 44-76 (90) 31 1dip_A Delta-sleep-inducing pe 31.8 27 0.0011 15.4 4.1 28 47-74 16-43 (78) 32 1m1j_C Fibrinogen gamma chain; 31.0 28 0.0012 15.3 4.8 30 44-73 36-65 (409) 33 2oa5_A Hypothetical protein BQ 29.7 13 0.00053 17.4 0.7 26 47-72 9-34 (110) 34 2dq0_A Seryl-tRNA synthetase; 28.9 30 0.0013 15.1 7.7 40 40-79 32-71 (455) 35 1p9i_A Cortexillin I/GCN4 hybr 27.7 31 0.0013 14.9 3.0 22 51-72 4-25 (31) 36 2gd7_A Hexim1 protein, HMBA-in 27.1 32 0.0014 14.9 4.8 29 47-75 69-97 (107) 37 1t6f_A Geminin; coiled-coil, c 26.8 33 0.0014 14.8 4.8 27 40-66 8-34 (37) 38 1x4t_A Hypothetical protein LO 26.3 33 0.0014 14.8 3.3 29 46-74 52-80 (92) 39 1x4q_A U4/U6 small nuclear rib 25.9 28 0.0012 15.3 1.9 23 67-95 13-35 (92) 40 1aa0_A Fibritin, gpwac E; coil 23.8 13 0.00053 17.4 -0.2 41 35-75 45-86 (113) 41 1nlw_A MAD protein, MAX dimeri 23.0 38 0.0016 14.4 5.0 31 42-72 50-80 (80) 42 1fmh_A General control protein 22.8 39 0.0016 14.4 4.7 26 43-68 5-30 (33) 43 1xaw_A Occludin; coiled-coil, 20.9 42 0.0018 14.1 6.3 54 37-90 57-120 (140) 44 1u0i_A IAAL-E3; coiled-coil, d 20.3 44 0.0018 14.1 2.7 16 50-65 4-19 (26) 45 1ybe_A Naprtase, nicotinate ph 20.1 39 0.0016 14.4 1.7 34 71-104 310-345 (449) No 1 >1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A* Probab=78.50 E-value=1.3 Score=23.35 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=17.8 Q ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9624989867-799999999999999999999837 Q gi|254780671|r 1 MWTKYYKKNH-FFRAIFLVIAFCCVVYFTNHAIVG 34 (105) Q Consensus 1 m~tk~~r~~~-~~~~~~~~~~~~~~~~f~~~~~~g 34 (105) |.++.+|+++ ++..++++++++++++..+.++.. T Consensus 1 m~~kk~kk~~~~~~~il~~i~l~v~~~~~~~l~~~ 35 (254) T 1rz2_A 1 MSSEKERKKKIFFQRILTVVFLGTFFYSVYELGDI 35 (254) T ss_dssp ----------------------------------C T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97422101779999999999999999999999999 No 2 >2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} Probab=65.83 E-value=7.4 Score=18.79 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=37.2 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 372039999999999999999999999999999999995027 Q gi|254780671|r 33 VGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 33 ~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .|+-.+..|.++++-+..-++++..|-+-|..|..++..|++ T Consensus 7 DGpvt~qEylevK~AL~aSEakIQqLmkvN~~ls~Elr~mQ~ 48 (63) T 2w6a_A 7 DGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQR 48 (63) T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 996119999999999874399999999997867699999999 No 3 >1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Probab=59.54 E-value=9.6 Score=18.09 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .......+..++.++..|+.+|..|..++..|++ T Consensus 17 R~RKk~~~~~Le~~~~~L~~en~~L~~e~~~L~~ 50 (55) T 1dh3_A 17 RRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999 No 4 >2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A Probab=54.95 E-value=9.2 Score=18.22 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999999999999999999999950279 Q gi|254780671|r 46 KSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) .++..++.++..++++...|+.++++|++. T Consensus 7 ~r~k~Le~~~~~l~~ei~~Lk~el~~l~~p 36 (109) T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARLRSP 36 (109) T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 899999999999999999999999985499 No 5 >1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori 26695} Probab=54.74 E-value=9.9 Score=18.00 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999999995027998989999999998098 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNL 92 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~ 92 (105) .+.+.-.++......-+.|-.+-..|..+|.++.+++.|.+.+++.=+++|.+ T Consensus 4 e~~d~I~~Lk~~d~hFa~l~~~y~~Ld~eI~~lE~~p~~d~~~e~LKk~Rl~L 56 (76) T 1zhc_A 4 EFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKL 56 (76) T ss_dssp HHHHHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 78999999986789999999999999999999865899918999999999997 No 6 >1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1 Probab=54.32 E-value=12 Score=17.56 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999950 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) .+..++.++..++.+...|+.+++.|+-++... T Consensus 13 ~v~~Lr~kie~Le~E~~~L~~~k~~LE~~lE~~ 45 (100) T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 7 >3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} Probab=54.21 E-value=12 Score=17.55 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH Q ss_conf 99999999999999999999999999995-027998989999999998 Q gi|254780671|r 43 SLEKSLIERERFLSELKENRSRLERKVKL-MSDGSLEKDLLDEKARYS 89 (105) Q Consensus 43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~-L~~~~~D~d~lEe~aR~~ 89 (105) +++.-.++...+...|+++....+.+... +..++.|++.++.++.+. T Consensus 75 ~~~~I~~~~~~~~~~Lr~qL~akr~EL~aLl~~~~~D~akI~aL~~eI 122 (175) T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEM 122 (175) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 999999999999999999999999999999717999999999999999 No 8 >2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* Probab=54.15 E-value=12 Score=17.54 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ....+..+..++.++..|..+|..|..++..|+. T Consensus 25 R~RKk~~~~~Le~~v~~L~~en~~L~~e~~~Lr~ 58 (63) T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999 No 9 >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Probab=52.10 E-value=13 Score=17.34 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...+..++.....+++.++.+...|+.++.+|++ T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~lrn 117 (117) T 3kin_B 84 AEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999999999999998619 No 10 >1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Probab=51.09 E-value=13 Score=17.24 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...+..+...+..+.+.++.++..|..+++.|++ T Consensus 54 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~~L~~ 87 (88) T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999999999999999997528 No 11 >1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A Probab=50.94 E-value=13 Score=17.23 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999950 Q gi|254780671|r 39 KANKSLEKSLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) .....++...+..-.....|+++|..|+.+|..| T Consensus 6 ~~mq~LNdRlA~YidkVr~LE~~N~~Le~~i~~L 39 (39) T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAELEQL 39 (39) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999998999999999998999899999999749 No 12 >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Probab=50.81 E-value=13 Score=17.21 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC Q ss_conf 99999999999999999999999999999502799898999999999809 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLN 91 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg 91 (105) -+++.+...+..+...+...+..|..+-..|+. +...-.++.|.-|| T Consensus 30 eELKEkn~~L~qe~~~~~~~~e~L~~eN~qLk~---E~~~WqeRlr~LLG 76 (81) T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKE---QQNGWQERLQALLG 76 (81) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC T ss_conf 999987577889999888658999999999899---99999999999871 No 13 >2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Probab=47.46 E-value=15 Score=16.89 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLERKV 69 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i 69 (105) ..-.++.++.++++..+.|..+|..|..++ T Consensus 20 DvEaLrlE~~eLkqK~e~L~eEN~eLK~kL 49 (53) T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 099999999999999999999999999998 No 14 >1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Probab=47.18 E-value=15 Score=16.87 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ....+..+..++.++..|..+|..|..++..|.. T Consensus 31 R~rkk~~~~~Le~~~~~L~~en~~L~~~~~~L~~ 64 (87) T 1hjb_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (87) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999 No 15 >1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B Probab=46.88 E-value=15 Score=16.84 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999950 Q gi|254780671|r 45 EKSLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 45 ~~~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) .+.....++.+..|+.+|+.|+.+|..| T Consensus 6 RRKn~shQQDiDDLkrQN~lle~qiraL 33 (34) T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 2355404433699999889999998850 No 16 >3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Probab=46.16 E-value=16 Score=16.77 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999995027 Q gi|254780671|r 47 SLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ++.+++.+++.|.++-..+..++.+|+. T Consensus 72 ~v~Elegei~~Lnq~Lqda~aevErLRr 99 (121) T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRR 99 (121) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998999999999999999999985 No 17 >1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Probab=42.71 E-value=18 Score=16.44 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 99999999999999999999999999999950279989899999999 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKAR 87 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR 87 (105) ....+..+..++.++..|+.+|..|..++..|... ..++-...+ T Consensus 18 R~rkk~~~~~le~~~~~L~~~n~~L~~~~~~L~~E---~~~Lk~~l~ 61 (63) T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKE---IQYLKDLIE 61 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH T ss_conf 99999999999999999999999999999999999---999999997 No 18 >2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A Probab=42.68 E-value=18 Score=16.44 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) -.++..-+.....+++.+..+|..|++++..|++ T Consensus 22 ~~EVd~FLd~va~~~e~l~~e~~~L~~~~~~l~~ 55 (57) T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999985 No 19 >2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Probab=42.63 E-value=15 Score=16.88 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...++.++..+.++-..|......+..++..|.+ T Consensus 8 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lte 41 (106) T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999650 No 20 >1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Probab=42.46 E-value=18 Score=16.42 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999999999995027 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ......+.+++.+...|..++..|..++..|.. T Consensus 18 ~Rkk~~~~~Le~~v~~L~~~~~~L~~~~~~L~~ 50 (61) T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 21 >2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A Probab=41.52 E-value=19 Score=16.33 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999999999999999999999999999950279 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) ...++..++..++.++..|+.+.+.+..++..|+.. T Consensus 21 ~lleLq~Qi~~Lq~ev~~LRG~iE~~~~~l~~l~~r 56 (83) T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999862899999999999999 No 22 >3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5} Probab=41.39 E-value=19 Score=16.31 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999999999999999999999999999950279 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) +...+..+++.+..++..|+++.++|+..+..+... T Consensus 99 ~l~~l~a~L~aLt~~L~~L~qqv~el~~~~~~~~~~ 134 (140) T 3iyn_Q 99 KLTALLAQLDSLTRELNVVSQQLLDLRQQVSALKAS 134 (140) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999999999999999999999997455777 No 23 >1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Probab=39.15 E-value=20 Score=16.10 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=19.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999999999995027 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...+..+..++.+...|..+|..|..++..|.. T Consensus 32 ~rKk~~~~~le~~~~~l~~en~~L~~~~~~L~~ 64 (78) T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 24 >1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Probab=38.43 E-value=21 Score=16.03 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999999502 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMS 73 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~ 73 (105) ...+..+...+..+...+..++..|..++..|+ T Consensus 49 I~~L~~~~~~l~~e~~~l~~~~~~L~~~l~~L~ 81 (83) T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999999999999743 No 25 >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} Probab=37.98 E-value=21 Score=15.99 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH Q ss_conf 99999999999999999999999999999999502799898 Q gi|254780671|r 39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEK 79 (105) Q Consensus 39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~ 79 (105) -...++..+...++.+++.|+++.+.+..+|..++....|. T Consensus 30 d~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~kk~~~~~ 70 (425) T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT 70 (425) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999999999999999999999999999999998679889 No 26 >2ve7_C Kinetochore protein NUF2, kinetochore protein SPC24; HEC1, NDC80, nucleus, mitosis, centromere, cell cycle, microtubule, coiled-coil, coiled coil; 2.88A {Homo sapiens} Probab=35.76 E-value=23 Score=15.77 Aligned_cols=41 Identities=5% Similarity=-0.021 Sum_probs=30.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 20399999999999999999999999999999999950279 Q gi|254780671|r 35 DYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 35 ~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) +.-...+.+...+......+.+.++.++.+++.+|..++.. T Consensus 137 e~~~~~~~e~~~e~~~~~ek~~~l~~~~~Ele~kIe~lk~~ 177 (250) T 2ve7_C 137 EACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250) T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999999999998889999999999999999789999987 No 27 >1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Probab=35.72 E-value=23 Score=15.77 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999995027 Q gi|254780671|r 43 SLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ..+..+..++.++..|..+|..|..++..|.. T Consensus 19 rkk~~~~~Le~~~~~L~~~n~~L~~~~~~L~~ 50 (62) T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999 No 28 >1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} SCOP: k.31.1.1 PDB: 2k8x_A Probab=34.69 E-value=24 Score=15.67 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999995027 Q gi|254780671|r 48 LIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 48 ~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .+..+..+..|+.+|-.|++++.+|+. T Consensus 7 ~~ai~~k~~~l~~~nyhlenevarlkk 33 (38) T 1ihq_A 7 LEAVRRKIRSLQEQNYHLENEVARLKK 33 (38) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999998874668889999999 No 29 >2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Probab=33.23 E-value=25 Score=15.52 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=19.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999999999995027 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...+..+..++.++..|..+|..|..++..|.. T Consensus 19 ~rkk~~~~~Le~~~~~l~~~~~~L~~e~~~l~~ 51 (63) T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 30 >2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1k1v_A Probab=32.99 E-value=26 Score=15.50 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999999999995027 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...+..+..++.++..|..++..|..++..|.. T Consensus 44 ~rkk~~~~~Le~~v~~L~~e~~~L~~e~~~L~~ 76 (90) T 2wt7_B 44 YKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR 76 (90) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 31 >1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1 Probab=31.83 E-value=27 Score=15.38 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999995027 Q gi|254780671|r 47 SLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) +.+.++..+.+|..+|..|+.+-..|++ T Consensus 16 EVevLke~I~eL~~~~~~Le~EN~~Lk~ 43 (78) T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999996 No 32 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Probab=31.02 E-value=28 Score=15.30 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999502 Q gi|254780671|r 44 LEKSLIERERFLSELKENRSRLERKVKLMS 73 (105) Q Consensus 44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~ 73 (105) ++.++..++.+++.++++...++.+|..|+ T Consensus 36 ld~eI~~Le~~l~el~~~l~ele~~Iq~Lq 65 (409) T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIK 65 (409) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899999999999999999999999999999 No 33 >2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A* Probab=29.71 E-value=13 Score=17.37 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=21.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999950 Q gi|254780671|r 47 SLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 47 ~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) ..+++.+++..|+-||..|..++.+= T Consensus 9 tvEeLaaeL~kL~mENK~LKkkl~~~ 34 (110) T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKSS 34 (110) T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999998789999998656 No 34 >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Probab=28.92 E-value=30 Score=15.08 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=23.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH Q ss_conf 9999999999999999999999999999999502799898 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEK 79 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~ 79 (105) ...++..+...++.+++.++++++.+..+|..++....|. T Consensus 32 ~ll~ld~~~r~l~~e~e~Lr~~rN~lSK~Ig~~kk~~~~~ 71 (455) T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV 71 (455) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 9999999999999999999999999999999998679978 No 35 >1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1 Probab=27.72 E-value=31 Score=14.95 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999950 Q gi|254780671|r 51 RERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 51 ~~~~l~~l~~~~~~L~~~i~~L 72 (105) +.+-+..++.+|.+|..++..| T Consensus 4 lnallasleaenkqlkakveel 25 (31) T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999998898878999999999 No 36 >2gd7_A Hexim1 protein, HMBA-inducible; transcription regulation, transcription elongation, positive transcription elongation factor-B; NMR {Homo sapiens} Probab=27.10 E-value=32 Score=14.88 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=17.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999999999950279 Q gi|254780671|r 47 SLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) ....++.++..|..+|..|..+-.+|+.. T Consensus 69 ~~~eL~~ele~L~~EN~~Lr~ENe~lr~e 97 (107) T 2gd7_A 69 RVRELELELDRLRAENLQLLTENELHRQQ 97 (107) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 08999999999999999999999999853 No 37 >1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1 Probab=26.82 E-value=33 Score=14.85 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLE 66 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~ 66 (105) ..-.+.+++++...+++.|+++|.+|. T Consensus 8 eneklhkeie~kd~eiarlk~en~el~ 34 (37) T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 859999999860169999998429888 No 38 >1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1 Probab=26.31 E-value=33 Score=14.79 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999995027 Q gi|254780671|r 46 KSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .++..+..++..|-.+...++.+|.-|-- T Consensus 52 ~~IRdLNDeINkL~rEK~~WE~rI~eLGG 80 (92) T 1x4t_A 52 FRIRDLNDEINKLLREKGHWEVRIKELGG 80 (92) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999999999279 No 39 >1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=25.86 E-value=28 Score=15.26 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=14.5 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 99995027998989999999998098789 Q gi|254780671|r 67 RKVKLMSDGSLEKDLLDEKARYSLNLSRS 95 (105) Q Consensus 67 ~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp 95 (105) .+++.|++ .||+.+++.||+.-| T Consensus 13 rEldeLkP------~iektV~KvLGfsE~ 35 (92) T 1x4q_A 13 RELDELKP------WIEKTVKRVLGFSEP 35 (92) T ss_dssp HHHHHHHH------HHHHHHHHHHSSCCH T ss_pred HHHHHHHH------HHHHHHHHHHCCCCH T ss_conf 76987547------999999999378852 No 40 >1aa0_A Fibritin, gpwac E; coiled coil, bacteriophage T4, structural protein, bacteriophage assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1 Probab=23.79 E-value=13 Score=17.38 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=27.4 Q ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 203999-99999999999999999999999999999950279 Q gi|254780671|r 35 DYGLKA-NKSLEKSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 35 ~~Gl~~-~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) ++|+.. ......++.....++..++.....++.+|..|++. T Consensus 45 erGli~svk~~et~i~~~~~~v~~~~~~l~~a~~~i~al~~a 86 (113) T 1aa0_A 45 ERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEA 86 (113) T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred ECCCHHHHHCCCCCCCEECCCCCHHCCCHHHHHHHHHHHHHC T ss_conf 224110222020123010110000001045542145788764 No 41 >1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Probab=23.02 E-value=38 Score=14.41 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999950 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) ..+..+...+..+.+.++.++..|..++..| T Consensus 50 ~~L~~~~~~l~~~~~~L~~~~~~L~~~l~~L 80 (80) T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999999999999998629 No 42 >1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A Probab=22.81 E-value=39 Score=14.38 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999 Q gi|254780671|r 43 SLEKSLIERERFLSELKENRSRLERK 68 (105) Q Consensus 43 ~l~~~~~~~~~~l~~l~~~~~~L~~~ 68 (105) ++.++.++.+++.-.|+++..+|+++ T Consensus 5 qlekevaqaeaenyqleqevaqlehe 30 (33) T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHE 30 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999886899999999876 No 43 >1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A Probab=20.91 E-value=42 Score=14.14 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 399999999999999999999999999----------999999950279989899999999980 Q gi|254780671|r 37 GLKANKSLEKSLIERERFLSELKENRS----------RLERKVKLMSDGSLEKDLLDEKARYSL 90 (105) Q Consensus 37 Gl~~~~~l~~~~~~~~~~l~~l~~~~~----------~L~~~i~~L~~~~~D~d~lEe~aR~~L 90 (105) .+..|.+|...+.....+...|..+-. .+..++.+++...-||+|.++..|-++ T Consensus 57 ~Y~EYk~L~a~v~~v~~~F~~L~~~L~~~~~~s~ey~~i~~~~~~~~~~k~dp~y~e~K~Rc~y 120 (140) T 1xaw_A 57 GLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQ 120 (140) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 4999999999999999999999999987798978899999999999987169069999999999 No 44 >1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} SCOP: k.6.1.1 Probab=20.25 E-value=44 Score=14.06 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=6.2 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q gi|254780671|r 50 ERERFLSELKENRSRL 65 (105) Q Consensus 50 ~~~~~l~~l~~~~~~L 65 (105) .+++++..|+++...| T Consensus 4 alekeiaalekeiaal 19 (26) T 1u0i_A 4 ALEKEIAALEKEIAAL 19 (26) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 8999999999999999 No 45 >1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Probab=20.08 E-value=39 Score=14.37 Aligned_cols=34 Identities=18% Similarity=-0.023 Sum_probs=20.9 Q ss_pred HHCCCCCCHHHHHHHHHHHHCC--CCCCCEEEEECC Q ss_conf 5027998989999999998098--789868767527 Q gi|254780671|r 71 LMSDGSLEKDLLDEKARYSLNL--SRSDEIILFYSD 104 (105) Q Consensus 71 ~L~~~~~D~d~lEe~aR~~Lg~--~kp~E~iii~~d 104 (105) -.+-+|=||.++-+.+|+.|.= +.|...+|+++| T Consensus 310 GVRlDSGDl~~~s~k~r~~~d~~G~~p~~K~iv~Sd 345 (449) T 1ybe_A 310 GFRPDSAPPIEGGEKIIEWWRKMGRDPRTKMLIFSD 345 (449) T ss_dssp EECCCSSCHHHHHHHHHHHHHHTTCCGGGSEEEECT T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC T ss_conf 890799898999999999999869997875799928 Done!