Query         gi|254780671|ref|YP_003065084.1| putative cell division protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 105
No_of_seqs    100 out of 686
Neff          7.1 
Searched_HMMs 23785
Date          Tue May 31 17:38:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780671.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1rz2_A Conserved hypothetical   78.5     1.3 5.6E-05   23.3   3.0   34    1-34      1-35  (254)
  2 2w6a_A ARF GTPase-activating p  65.8     7.4 0.00031   18.8   5.8   42   33-74      7-48  (63)
  3 1dh3_A Transcription factor CR  59.5     9.6  0.0004   18.1   5.4   34   41-74     17-50  (55)
  4 2wg5_A General control protein  55.0     9.2 0.00039   18.2   3.3   30   46-75      7-36  (109)
  5 1zhc_A Hypothetical protein HP  54.7     9.9 0.00042   18.0   3.5   53   40-92      4-56  (76)
  6 1go4_E MAD1 (mitotic arrest de  54.3      12 0.00049   17.6   5.6   33   40-72     13-45  (100)
  7 3lay_A Zinc resistance-associa  54.2      12  0.0005   17.5   8.0   47   43-89     75-122 (175)
  8 2dgc_A Protein (GCN4); basic d  54.1      12  0.0005   17.5   5.3   34   41-74     25-58  (63)
  9 3kin_B Kinesin heavy chain; mo  52.1      13 0.00054   17.3   5.5   34   41-74     84-117 (117)
 10 1nkp_A C-MYC, MYC proto-oncoge  51.1      13 0.00056   17.2   5.5   34   41-74     54-87  (88)
 11 1gk7_A Vimentin; intermediate   50.9      13 0.00056   17.2   5.1   34   39-72      6-39  (39)
 12 2jee_A YIIU; FTSZ, septum, coi  50.8      13 0.00056   17.2   5.2   47   42-91     30-76  (81)
 13 2yy0_A C-MYC-binding protein;   47.5      15 0.00063   16.9   4.3   30   40-69     20-49  (53)
 14 1hjb_A Ccaat/enhancer binding   47.2      15 0.00064   16.9   5.1   34   41-74     31-64  (87)
 15 1a93_B MAX protein, coiled coi  46.9      15 0.00065   16.8   4.7   28   45-72      6-33  (34)
 16 3mq7_A Bone marrow stromal ant  46.2      16 0.00067   16.8   4.3   28   47-74     72-99  (121)
 17 1ci6_A Transcription factor AT  42.7      18 0.00075   16.4   6.1   44   41-87     18-61  (63)
 18 2wuj_A Septum site-determining  42.7      18 0.00075   16.4   4.7   34   41-74     22-55  (57)
 19 2aze_B Transcription factor E2  42.6      15 0.00064   16.9   2.8   34   41-74      8-41  (106)
 20 1t2k_D Cyclic-AMP-dependent tr  42.5      18 0.00076   16.4   4.8   33   42-74     18-50  (61)
 21 2xdj_A Uncharacterized protein  41.5      19 0.00079   16.3   5.5   36   40-75     21-56  (83)
 22 3iyn_Q Protein IX, PIX, hexon-  41.4      19 0.00079   16.3   4.2   36   40-75     99-134 (140)
 23 1gu4_A CAAT/enhancer binding p  39.1      20 0.00086   16.1   5.6   33   42-74     32-64  (78)
 24 1nkp_B MAX protein, MYC proto-  38.4      21 0.00088   16.0   5.2   33   41-73     49-81  (83)
 25 2dq3_A Seryl-tRNA synthetase;   38.0      21 0.00089   16.0   4.3   41   39-79     30-70  (425)
 26 2ve7_C Kinetochore protein NUF  35.8      23 0.00097   15.8   4.2   41   35-75    137-177 (250)
 27 1jnm_A Proto-oncogene C-JUN; B  35.7      23 0.00097   15.8   5.1   32   43-74     19-50  (62)
 28 1ihq_A Chimeric peptide glytm1  34.7      24   0.001   15.7   3.9   27   48-74      7-33  (38)
 29 2wt7_A Proto-oncogene protein   33.2      25  0.0011   15.5   5.2   33   42-74     19-51  (63)
 30 2wt7_B Transcription factor MA  33.0      26  0.0011   15.5   5.6   33   42-74     44-76  (90)
 31 1dip_A Delta-sleep-inducing pe  31.8      27  0.0011   15.4   4.1   28   47-74     16-43  (78)
 32 1m1j_C Fibrinogen gamma chain;  31.0      28  0.0012   15.3   4.8   30   44-73     36-65  (409)
 33 2oa5_A Hypothetical protein BQ  29.7      13 0.00053   17.4   0.7   26   47-72      9-34  (110)
 34 2dq0_A Seryl-tRNA synthetase;   28.9      30  0.0013   15.1   7.7   40   40-79     32-71  (455)
 35 1p9i_A Cortexillin I/GCN4 hybr  27.7      31  0.0013   14.9   3.0   22   51-72      4-25  (31)
 36 2gd7_A Hexim1 protein, HMBA-in  27.1      32  0.0014   14.9   4.8   29   47-75     69-97  (107)
 37 1t6f_A Geminin; coiled-coil, c  26.8      33  0.0014   14.8   4.8   27   40-66      8-34  (37)
 38 1x4t_A Hypothetical protein LO  26.3      33  0.0014   14.8   3.3   29   46-74     52-80  (92)
 39 1x4q_A U4/U6 small nuclear rib  25.9      28  0.0012   15.3   1.9   23   67-95     13-35  (92)
 40 1aa0_A Fibritin, gpwac E; coil  23.8      13 0.00053   17.4  -0.2   41   35-75     45-86  (113)
 41 1nlw_A MAD protein, MAX dimeri  23.0      38  0.0016   14.4   5.0   31   42-72     50-80  (80)
 42 1fmh_A General control protein  22.8      39  0.0016   14.4   4.7   26   43-68      5-30  (33)
 43 1xaw_A Occludin; coiled-coil,   20.9      42  0.0018   14.1   6.3   54   37-90     57-120 (140)
 44 1u0i_A IAAL-E3; coiled-coil, d  20.3      44  0.0018   14.1   2.7   16   50-65      4-19  (26)
 45 1ybe_A Naprtase, nicotinate ph  20.1      39  0.0016   14.4   1.7   34   71-104   310-345 (449)

No 1  
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=78.50  E-value=1.3  Score=23.35  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=17.8

Q ss_pred             CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9624989867-799999999999999999999837
Q gi|254780671|r    1 MWTKYYKKNH-FFRAIFLVIAFCCVVYFTNHAIVG   34 (105)
Q Consensus         1 m~tk~~r~~~-~~~~~~~~~~~~~~~~f~~~~~~g   34 (105)
                      |.++.+|+++ ++..++++++++++++..+.++..
T Consensus         1 m~~kk~kk~~~~~~~il~~i~l~v~~~~~~~l~~~   35 (254)
T 1rz2_A            1 MSSEKERKKKIFFQRILTVVFLGTFFYSVYELGDI   35 (254)
T ss_dssp             ----------------------------------C
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97422101779999999999999999999999999


No 2  
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=65.83  E-value=7.4  Score=18.79  Aligned_cols=42  Identities=21%  Similarity=0.266  Sum_probs=37.2

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             372039999999999999999999999999999999995027
Q gi|254780671|r   33 VGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        33 ~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      .|+-.+..|.++++-+..-++++..|-+-|..|..++..|++
T Consensus         7 DGpvt~qEylevK~AL~aSEakIQqLmkvN~~ls~Elr~mQ~   48 (63)
T 2w6a_A            7 DGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQR   48 (63)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             996119999999999874399999999997867699999999


No 3  
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=59.54  E-value=9.6  Score=18.09  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      .......+..++.++..|+.+|..|..++..|++
T Consensus        17 R~RKk~~~~~Le~~~~~L~~en~~L~~e~~~L~~   50 (55)
T 1dh3_A           17 RRKKKEYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999


No 4  
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=54.95  E-value=9.2  Score=18.22  Aligned_cols=30  Identities=20%  Similarity=0.218  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999999999950279
Q gi|254780671|r   46 KSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      .++..++.++..++++...|+.++++|++.
T Consensus         7 ~r~k~Le~~~~~l~~ei~~Lk~el~~l~~p   36 (109)
T 2wg5_A            7 HRMKQLEDKVEELLSKNYHLENEVARLRSP   36 (109)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             899999999999999999999999985499


No 5  
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori 26695}
Probab=54.74  E-value=9.9  Score=18.00  Aligned_cols=53  Identities=11%  Similarity=0.164  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999995027998989999999998098
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNL   92 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg~   92 (105)
                      .+.+.-.++......-+.|-.+-..|..+|.++.+++.|.+.+++.=+++|.+
T Consensus         4 e~~d~I~~Lk~~d~hFa~l~~~y~~Ld~eI~~lE~~p~~d~~~e~LKk~Rl~L   56 (76)
T 1zhc_A            4 EFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKL   56 (76)
T ss_dssp             HHHHHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             78999999986789999999999999999999865899918999999999997


No 6  
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.32  E-value=12  Score=17.56  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999950
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      .+..++.++..++.+...|+.+++.|+-++...
T Consensus        13 ~v~~Lr~kie~Le~E~~~L~~~k~~LE~~lE~~   45 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR   45 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 7  
>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp}
Probab=54.21  E-value=12  Score=17.55  Aligned_cols=47  Identities=11%  Similarity=0.045  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999999999999999995-027998989999999998
Q gi|254780671|r   43 SLEKSLIERERFLSELKENRSRLERKVKL-MSDGSLEKDLLDEKARYS   89 (105)
Q Consensus        43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~-L~~~~~D~d~lEe~aR~~   89 (105)
                      +++.-.++...+...|+++....+.+... +..++.|++.++.++.+.
T Consensus        75 ~~~~I~~~~~~~~~~Lr~qL~akr~EL~aLl~~~~~D~akI~aL~~eI  122 (175)
T 3lay_A           75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEM  122 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             999999999999999999999999999999717999999999999999


No 8  
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C*
Probab=54.15  E-value=12  Score=17.54  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ....+..+..++.++..|..+|..|..++..|+.
T Consensus        25 R~RKk~~~~~Le~~v~~L~~en~~L~~e~~~Lr~   58 (63)
T 2dgc_A           25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKK   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999


No 9  
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=52.10  E-value=13  Score=17.34  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...+..++.....+++.++.+...|+.++.+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~lrn  117 (117)
T 3kin_B           84 AEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN  117 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999999999999998619


No 10 
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.09  E-value=13  Score=17.24  Aligned_cols=34  Identities=15%  Similarity=0.113  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...+..+...+..+.+.++.++..|..+++.|++
T Consensus        54 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~~L~~   87 (88)
T 1nkp_A           54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG   87 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999999999999997528


No 11 
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=50.94  E-value=13  Score=17.23  Aligned_cols=34  Identities=9%  Similarity=0.056  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999950
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      .....++...+..-.....|+++|..|+.+|..|
T Consensus         6 ~~mq~LNdRlA~YidkVr~LE~~N~~Le~~i~~L   39 (39)
T 1gk7_A            6 VELQELNDRFANYIDKVRFLEQQNKILLAELEQL   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999998999999999998999899999999749


No 12 
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.81  E-value=13  Score=17.21  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999999502799898999999999809
Q gi|254780671|r   42 KSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLN   91 (105)
Q Consensus        42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg   91 (105)
                      -+++.+...+..+...+...+..|..+-..|+.   +...-.++.|.-||
T Consensus        30 eELKEkn~~L~qe~~~~~~~~e~L~~eN~qLk~---E~~~WqeRlr~LLG   76 (81)
T 2jee_A           30 EELKEKNNSLSQEVQNAQHQREELERENNHLKE---QQNGWQERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_conf             999987577889999888658999999999899---99999999999871


No 13 
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.46  E-value=15  Score=16.89  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKV   69 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i   69 (105)
                      ..-.++.++.++++..+.|..+|..|..++
T Consensus        20 DvEaLrlE~~eLkqK~e~L~eEN~eLK~kL   49 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             099999999999999999999999999998


No 14 
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=47.18  E-value=15  Score=16.87  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ....+..+..++.++..|..+|..|..++..|..
T Consensus        31 R~rkk~~~~~Le~~~~~L~~en~~L~~~~~~L~~   64 (87)
T 1hjb_A           31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSR   64 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999


No 15 
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=46.88  E-value=15  Score=16.84  Aligned_cols=28  Identities=18%  Similarity=0.328  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999950
Q gi|254780671|r   45 EKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        45 ~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      .+.....++.+..|+.+|+.|+.+|..|
T Consensus         6 RRKn~shQQDiDDLkrQN~lle~qiraL   33 (34)
T 1a93_B            6 RRKNDTHQQDIDDLKRQNALLEQQVRAL   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             2355404433699999889999998850


No 16 
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.16  E-value=16  Score=16.77  Aligned_cols=28  Identities=14%  Similarity=0.139  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999995027
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ++.+++.+++.|.++-..+..++.+|+.
T Consensus        72 ~v~Elegei~~Lnq~Lqda~aevErLRr   99 (121)
T 3mq7_A           72 KVEELEGEITTLNHKLQDASAEVERLRR   99 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998999999999999999999985


No 17 
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.71  E-value=18  Score=16.44  Aligned_cols=44  Identities=9%  Similarity=0.091  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             99999999999999999999999999999950279989899999999
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKAR   87 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR   87 (105)
                      ....+..+..++.++..|+.+|..|..++..|...   ..++-...+
T Consensus        18 R~rkk~~~~~le~~~~~L~~~n~~L~~~~~~L~~E---~~~Lk~~l~   61 (63)
T 1ci6_A           18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKE---IQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf             99999999999999999999999999999999999---999999997


No 18 
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=42.68  E-value=18  Score=16.44  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      -.++..-+.....+++.+..+|..|++++..|++
T Consensus        22 ~~EVd~FLd~va~~~e~l~~e~~~L~~~~~~l~~   55 (57)
T 2wuj_A           22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE   55 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999985


No 19 
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=42.63  E-value=15  Score=16.88  Aligned_cols=34  Identities=15%  Similarity=0.184  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999995027
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...++.++..+.++-..|......+..++..|.+
T Consensus         8 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lte   41 (106)
T 2aze_B            8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE   41 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999650


No 20 
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.46  E-value=18  Score=16.42  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999995027
Q gi|254780671|r   42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ......+.+++.+...|..++..|..++..|..
T Consensus        18 ~Rkk~~~~~Le~~v~~L~~~~~~L~~~~~~L~~   50 (61)
T 1t2k_D           18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 21 
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.52  E-value=19  Score=16.33  Aligned_cols=36  Identities=8%  Similarity=0.147  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999999999999999950279
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      ...++..++..++.++..|+.+.+.+..++..|+..
T Consensus        21 ~lleLq~Qi~~Lq~ev~~LRG~iE~~~~~l~~l~~r   56 (83)
T 2xdj_A           21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER   56 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999862899999999999999


No 22 
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=41.39  E-value=19  Score=16.31  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999999999999999950279
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      +...+..+++.+..++..|+++.++|+..+..+...
T Consensus        99 ~l~~l~a~L~aLt~~L~~L~qqv~el~~~~~~~~~~  134 (140)
T 3iyn_Q           99 KLTALLAQLDSLTRELNVVSQQLLDLRQQVSALKAS  134 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999999999999999999997455777


No 23 
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=39.15  E-value=20  Score=16.10  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999995027
Q gi|254780671|r   42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...+..+..++.+...|..+|..|..++..|..
T Consensus        32 ~rKk~~~~~le~~~~~l~~en~~L~~~~~~L~~   64 (78)
T 1gu4_A           32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSR   64 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 24 
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.43  E-value=21  Score=16.03  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999502
Q gi|254780671|r   41 NKSLEKSLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      ...+..+...+..+...+..++..|..++..|+
T Consensus        49 I~~L~~~~~~l~~e~~~l~~~~~~L~~~l~~L~   81 (83)
T 1nkp_B           49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999999999743


No 25 
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=37.98  E-value=21  Score=15.99  Aligned_cols=41  Identities=17%  Similarity=0.248  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             99999999999999999999999999999999502799898
Q gi|254780671|r   39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEK   79 (105)
Q Consensus        39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~   79 (105)
                      -...++..+...++.+++.|+++.+.+..+|..++....|.
T Consensus        30 d~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~kk~~~~~   70 (425)
T 2dq3_A           30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT   70 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999999999999999999999999999999998679889


No 26 
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC24; HEC1, NDC80, nucleus, mitosis, centromere, cell cycle, microtubule, coiled-coil, coiled coil; 2.88A {Homo sapiens}
Probab=35.76  E-value=23  Score=15.77  Aligned_cols=41  Identities=5%  Similarity=-0.021  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             20399999999999999999999999999999999950279
Q gi|254780671|r   35 DYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        35 ~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      +.-...+.+...+......+.+.++.++.+++.+|..++..
T Consensus       137 e~~~~~~~e~~~e~~~~~ek~~~l~~~~~Ele~kIe~lk~~  177 (250)
T 2ve7_C          137 EACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE  177 (250)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999999998889999999999999999789999987


No 27 
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.72  E-value=23  Score=15.77  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999995027
Q gi|254780671|r   43 SLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ..+..+..++.++..|..+|..|..++..|..
T Consensus        19 rkk~~~~~Le~~~~~L~~~n~~L~~~~~~L~~   50 (62)
T 1jnm_A           19 RKLERIARLEEKVKTLKAQNSELASTANMLRE   50 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999


No 28 
>1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} SCOP: k.31.1.1 PDB: 2k8x_A
Probab=34.69  E-value=24  Score=15.67  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999995027
Q gi|254780671|r   48 LIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        48 ~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      .+..+..+..|+.+|-.|++++.+|+.
T Consensus         7 ~~ai~~k~~~l~~~nyhlenevarlkk   33 (38)
T 1ihq_A            7 LEAVRRKIRSLQEQNYHLENEVARLKK   33 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998874668889999999


No 29 
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.23  E-value=25  Score=15.52  Aligned_cols=33  Identities=9%  Similarity=0.096  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999995027
Q gi|254780671|r   42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...+..+..++.++..|..+|..|..++..|..
T Consensus        19 ~rkk~~~~~Le~~~~~l~~~~~~L~~e~~~l~~   51 (63)
T 2wt7_A           19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLK   51 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 30 
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1k1v_A
Probab=32.99  E-value=26  Score=15.50  Aligned_cols=33  Identities=12%  Similarity=0.077  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999999995027
Q gi|254780671|r   42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      ...+..+..++.++..|..++..|..++..|..
T Consensus        44 ~rkk~~~~~Le~~v~~L~~e~~~L~~e~~~L~~   76 (90)
T 2wt7_B           44 YKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR   76 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 31 
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=31.83  E-value=27  Score=15.38  Aligned_cols=28  Identities=29%  Similarity=0.342  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999995027
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      +.+.++..+.+|..+|..|+.+-..|++
T Consensus        16 EVevLke~I~eL~~~~~~Le~EN~~Lk~   43 (78)
T 1dip_A           16 EVEILKEQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999996


No 32 
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.02  E-value=28  Score=15.30  Aligned_cols=30  Identities=17%  Similarity=0.307  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999502
Q gi|254780671|r   44 LEKSLIERERFLSELKENRSRLERKVKLMS   73 (105)
Q Consensus        44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~   73 (105)
                      ++.++..++.+++.++++...++.+|..|+
T Consensus        36 ld~eI~~Le~~l~el~~~l~ele~~Iq~Lq   65 (409)
T 1m1j_C           36 TDGELLEIEGLLQQATNSTGSIEYLIQHIK   65 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999999999999999999


No 33 
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=29.71  E-value=13  Score=17.37  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999950
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      ..+++.+++..|+-||..|..++.+=
T Consensus         9 tvEeLaaeL~kL~mENK~LKkkl~~~   34 (110)
T 2oa5_A            9 TYEEMVKEVERLKLENKTLKQKVKSS   34 (110)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999998789999998656


No 34 
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.92  E-value=30  Score=15.08  Aligned_cols=40  Identities=8%  Similarity=0.110  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             9999999999999999999999999999999502799898
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEK   79 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~   79 (105)
                      ...++..+...++.+++.++++++.+..+|..++....|.
T Consensus        32 ~ll~ld~~~r~l~~e~e~Lr~~rN~lSK~Ig~~kk~~~~~   71 (455)
T 2dq0_A           32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV   71 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             9999999999999999999999999999999998679978


No 35 
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=27.72  E-value=31  Score=14.95  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999950
Q gi|254780671|r   51 RERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        51 ~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      +.+-+..++.+|.+|..++..|
T Consensus         4 lnallasleaenkqlkakveel   25 (31)
T 1p9i_A            4 LNALLASLEAENKQLKAKVEEL   25 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999998898878999999999


No 36 
>2gd7_A Hexim1 protein, HMBA-inducible; transcription regulation, transcription elongation, positive transcription elongation factor-B; NMR {Homo sapiens}
Probab=27.10  E-value=32  Score=14.88  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999999999950279
Q gi|254780671|r   47 SLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        47 ~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      ....++.++..|..+|..|..+-.+|+..
T Consensus        69 ~~~eL~~ele~L~~EN~~Lr~ENe~lr~e   97 (107)
T 2gd7_A           69 RVRELELELDRLRAENLQLLTENELHRQQ   97 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             08999999999999999999999999853


No 37 
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.82  E-value=33  Score=14.85  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999
Q gi|254780671|r   40 ANKSLEKSLIERERFLSELKENRSRLE   66 (105)
Q Consensus        40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~   66 (105)
                      ..-.+.+++++...+++.|+++|.+|.
T Consensus         8 eneklhkeie~kd~eiarlk~en~el~   34 (37)
T 1t6f_A            8 ENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             859999999860169999998429888


No 38 
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=26.31  E-value=33  Score=14.79  Aligned_cols=29  Identities=10%  Similarity=0.189  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999995027
Q gi|254780671|r   46 KSLIERERFLSELKENRSRLERKVKLMSD   74 (105)
Q Consensus        46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~   74 (105)
                      .++..+..++..|-.+...++.+|.-|--
T Consensus        52 ~~IRdLNDeINkL~rEK~~WE~rI~eLGG   80 (92)
T 1x4t_A           52 FRIRDLNDEINKLLREKGHWEVRIKELGG   80 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999999279


No 39 
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.86  E-value=28  Score=15.26  Aligned_cols=23  Identities=13%  Similarity=0.336  Sum_probs=14.5

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             99995027998989999999998098789
Q gi|254780671|r   67 RKVKLMSDGSLEKDLLDEKARYSLNLSRS   95 (105)
Q Consensus        67 ~~i~~L~~~~~D~d~lEe~aR~~Lg~~kp   95 (105)
                      .+++.|++      .||+.+++.||+.-|
T Consensus        13 rEldeLkP------~iektV~KvLGfsE~   35 (92)
T 1x4q_A           13 RELDELKP------WIEKTVKRVLGFSEP   35 (92)
T ss_dssp             HHHHHHHH------HHHHHHHHHHSSCCH
T ss_pred             HHHHHHHH------HHHHHHHHHHCCCCH
T ss_conf             76987547------999999999378852


No 40 
>1aa0_A Fibritin, gpwac E; coiled coil, bacteriophage T4, structural protein, bacteriophage assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.79  E-value=13  Score=17.38  Aligned_cols=41  Identities=22%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             203999-99999999999999999999999999999950279
Q gi|254780671|r   35 DYGLKA-NKSLEKSLIERERFLSELKENRSRLERKVKLMSDG   75 (105)
Q Consensus        35 ~~Gl~~-~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~   75 (105)
                      ++|+.. ......++.....++..++.....++.+|..|++.
T Consensus        45 erGli~svk~~et~i~~~~~~v~~~~~~l~~a~~~i~al~~a   86 (113)
T 1aa0_A           45 ERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEA   86 (113)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ECCCHHHHHCCCCCCCEECCCCCHHCCCHHHHHHHHHHHHHC
T ss_conf             224110222020123010110000001045542145788764


No 41 
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.02  E-value=38  Score=14.41  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999950
Q gi|254780671|r   42 KSLEKSLIERERFLSELKENRSRLERKVKLM   72 (105)
Q Consensus        42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L   72 (105)
                      ..+..+...+..+.+.++.++..|..++..|
T Consensus        50 ~~L~~~~~~l~~~~~~L~~~~~~L~~~l~~L   80 (80)
T 1nlw_A           50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEKL   80 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999999999998629


No 42 
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=22.81  E-value=39  Score=14.38  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999
Q gi|254780671|r   43 SLEKSLIERERFLSELKENRSRLERK   68 (105)
Q Consensus        43 ~l~~~~~~~~~~l~~l~~~~~~L~~~   68 (105)
                      ++.++.++.+++.-.|+++..+|+++
T Consensus         5 qlekevaqaeaenyqleqevaqlehe   30 (33)
T 1fmh_A            5 QLEKEVAQAEAENYQLEQEVAQLEHE   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999886899999999876


No 43 
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=20.91  E-value=42  Score=14.14  Aligned_cols=54  Identities=22%  Similarity=0.199  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             399999999999999999999999999----------999999950279989899999999980
Q gi|254780671|r   37 GLKANKSLEKSLIERERFLSELKENRS----------RLERKVKLMSDGSLEKDLLDEKARYSL   90 (105)
Q Consensus        37 Gl~~~~~l~~~~~~~~~~l~~l~~~~~----------~L~~~i~~L~~~~~D~d~lEe~aR~~L   90 (105)
                      .+..|.+|...+.....+...|..+-.          .+..++.+++...-||+|.++..|-++
T Consensus        57 ~Y~EYk~L~a~v~~v~~~F~~L~~~L~~~~~~s~ey~~i~~~~~~~~~~k~dp~y~e~K~Rc~y  120 (140)
T 1xaw_A           57 GLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQ  120 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             4999999999999999999999999987798978899999999999987169069999999999


No 44 
>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} SCOP: k.6.1.1
Probab=20.25  E-value=44  Score=14.06  Aligned_cols=16  Identities=19%  Similarity=0.283  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q gi|254780671|r   50 ERERFLSELKENRSRL   65 (105)
Q Consensus        50 ~~~~~l~~l~~~~~~L   65 (105)
                      .+++++..|+++...|
T Consensus         4 alekeiaalekeiaal   19 (26)
T 1u0i_A            4 ALEKEIAALEKEIAAL   19 (26)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             8999999999999999


No 45 
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=20.08  E-value=39  Score=14.37  Aligned_cols=34  Identities=18%  Similarity=-0.023  Sum_probs=20.9

Q ss_pred             HHCCCCCCHHHHHHHHHHHHCC--CCCCCEEEEECC
Q ss_conf             5027998989999999998098--789868767527
Q gi|254780671|r   71 LMSDGSLEKDLLDEKARYSLNL--SRSDEIILFYSD  104 (105)
Q Consensus        71 ~L~~~~~D~d~lEe~aR~~Lg~--~kp~E~iii~~d  104 (105)
                      -.+-+|=||.++-+.+|+.|.=  +.|...+|+++|
T Consensus       310 GVRlDSGDl~~~s~k~r~~~d~~G~~p~~K~iv~Sd  345 (449)
T 1ybe_A          310 GFRPDSAPPIEGGEKIIEWWRKMGRDPRTKMLIFSD  345 (449)
T ss_dssp             EECCCSSCHHHHHHHHHHHHHHTTCCGGGSEEEECT
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             890799898999999999999869997875799928


Done!