HHsearch alignment for GI: 254780673 and conserved domain: PRK05444
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=100.00 E-value=0 Score=375.40 Aligned_cols=301 Identities=22% Similarity=0.350 Sum_probs=251.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH-H
Q ss_conf 000000122355443113650699932434458866532364754081110116666278998999988718864456-6
Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE-F 217 (467)
Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~-~ 217 (467)
T Consensus 268 ~~~~~~~f~~~L~~l~~~~~~iv~itaa~~~--~t-~-l~~f~~~~-P~R~~~~GIaEqhav~~aaGlA~~G~~Pf~~~~ 342 (576)
T PRK05444 268 KPSYTKVFGETLCELAEKDPKIVAITAAMPE--GT-G-LDEFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIY 342 (576)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEHHHCCC--CC-C-CCHHHHHC-CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 5069999999999998743020030542147--86-6-44367758-763411574577799997458656998668882
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHHH
Q ss_conf 6667899999999987886742117767888799830-244576444433216-88763220313866522100010555
Q gi|254780673|r 218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP-NGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLLK 295 (467)
Q Consensus 218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll~ 295 (467)
T Consensus 343 s--tFl~Ra~dQi~~d~al--------~~l~V~~v~d~~GlvGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~~~~ 412 (576)
T PRK05444 343 S--TFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLY 412 (576)
T ss_pred C--HHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf 1--2877769999876541--------27976899607866789985100379999852699818996299999999999
Q ss_pred HHHHC-CCCEEEECCCCCCCCC--CCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 65413-7834764021233333--45334663121443114443168745860257888888887531004675279733
Q gi|254780673|r 296 AAIRD-PNPVIFLENEILYGSS--FEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDL 372 (467)
Q Consensus 296 ~ai~~-~~Pvi~le~~~ly~~~--~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~ 372 (467)
T Consensus 413 ~Al~~~~gP~~i-----rl~R~~~~~~~~~~~~~~~~Gk~~vl~~G~dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~ 487 (576)
T PRK05444 413 TALAYDDGPTAI-----RYPRGSGVGVELPELEPLPIGKGEVLREGSDVAILAFGTMLAEALEAAERLAAEGISATVVDA 487 (576)
T ss_pred HHHHCCCCCEEE-----EECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 998578998899-----942788888787765434465089996289789995387999999999999856998799955
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCCCCHH
Q ss_conf 006857999999999871989999578876767899999999967764289829971777888889--667656089989
Q gi|254780673|r 373 RTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLALPNVD 450 (467)
Q Consensus 373 r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~p~~~ 450 (467)
T Consensus 488 ~~ikPlD~e~l~~~~~~~~~ivtvEeh~~~GGlGs~v~e~l~~~g~~-~~~~~~~iGi~D~F~~sG~~~~L~~~~Gl~~e 566 (576)
T PRK05444 488 RFVKPLDEELLLELAAKHELLVTVEENAIMGGFGSAVLEFLAEHGLL-KPVKVLNLGLPDEFIDHGSREELLAELGLDAE 566 (576)
T ss_pred CCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCCHHHHHHHHCCCHH
T ss_conf 87788799999999954897999938975765899999999975997-79746999848836688999999999693999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999985
Q gi|254780673|r 451 EIIESVESIC 460 (467)
Q Consensus 451 ~I~~av~~v~ 460 (467)
T Consensus 567 ~I~~kI~~~L 576 (576)
T PRK05444 567 GIARRILAWL 576 (576)
T ss_pred HHHHHHHHHC
T ss_conf 9999999659