HHsearch alignment for GI: 254780673 and conserved domain: PRK05444

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=100.00  E-value=0  Score=375.40  Aligned_cols=301  Identities=22%  Similarity=0.350  Sum_probs=251.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH-H
Q ss_conf             000000122355443113650699932434458866532364754081110116666278998999988718864456-6
Q gi|254780673|r  139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE-F  217 (467)
Q Consensus       139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~-~  217 (467)
T Consensus       268 ~~~~~~~f~~~L~~l~~~~~~iv~itaa~~~--~t-~-l~~f~~~~-P~R~~~~GIaEqhav~~aaGlA~~G~~Pf~~~~  342 (576)
T PRK05444        268 KPSYTKVFGETLCELAEKDPKIVAITAAMPE--GT-G-LDEFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIY  342 (576)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEHHHCCC--CC-C-CCHHHHHC-CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             5069999999999998743020030542147--86-6-44367758-763411574577799997458656998668882


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHHH
Q ss_conf             6667899999999987886742117767888799830-244576444433216-88763220313866522100010555
Q gi|254780673|r  218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP-NGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLLK  295 (467)
Q Consensus       218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll~  295 (467)
T Consensus       343 s--tFl~Ra~dQi~~d~al--------~~l~V~~v~d~~GlvGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~~~~  412 (576)
T PRK05444        343 S--TFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLY  412 (576)
T ss_pred             C--HHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf             1--2877769999876541--------27976899607866789985100379999852699818996299999999999


Q ss_pred             HHHHC-CCCEEEECCCCCCCCC--CCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             65413-7834764021233333--45334663121443114443168745860257888888887531004675279733
Q gi|254780673|r  296 AAIRD-PNPVIFLENEILYGSS--FEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDL  372 (467)
Q Consensus       296 ~ai~~-~~Pvi~le~~~ly~~~--~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~  372 (467)
T Consensus       413 ~Al~~~~gP~~i-----rl~R~~~~~~~~~~~~~~~~Gk~~vl~~G~dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~  487 (576)
T PRK05444        413 TALAYDDGPTAI-----RYPRGSGVGVELPELEPLPIGKGEVLREGSDVAILAFGTMLAEALEAAERLAAEGISATVVDA  487 (576)
T ss_pred             HHHHCCCCCEEE-----EECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             998578998899-----942788888787765434465089996289789995387999999999999856998799955


Q ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCCCCHH
Q ss_conf             006857999999999871989999578876767899999999967764289829971777888889--667656089989
Q gi|254780673|r  373 RTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLALPNVD  450 (467)
Q Consensus       373 r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~p~~~  450 (467)
T Consensus       488 ~~ikPlD~e~l~~~~~~~~~ivtvEeh~~~GGlGs~v~e~l~~~g~~-~~~~~~~iGi~D~F~~sG~~~~L~~~~Gl~~e  566 (576)
T PRK05444        488 RFVKPLDEELLLELAAKHELLVTVEENAIMGGFGSAVLEFLAEHGLL-KPVKVLNLGLPDEFIDHGSREELLAELGLDAE  566 (576)
T ss_pred             CCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCCHHHHHHHHCCCHH
T ss_conf             87788799999999954897999938975765899999999975997-79746999848836688999999999693999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999985
Q gi|254780673|r  451 EIIESVESIC  460 (467)
Q Consensus       451 ~I~~av~~v~  460 (467)
T Consensus       567 ~I~~kI~~~L  576 (576)
T PRK05444        567 GIARRILAWL  576 (576)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999659