HHsearch alignment for GI: 254780673 and conserved domain: PRK12315
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=100.00 E-value=0 Score=364.61 Aligned_cols=298 Identities=19% Similarity=0.245 Sum_probs=249.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 00000012235544311365069993243445886653236475408111011666627899899998871886445666
Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFM 218 (467)
Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~ 218 (467)
T Consensus 277 ~~~~~~~~~~~l~~~~~~~~~ivai~a~~~~---~~g-l~~f~~~~-P~R~i~~GIaEq~mv~~a~GlA~~G~~P~~~-~ 350 (581)
T PRK12315 277 GESYSSVVLDYLLKKIEEGKPVVAINAAIPG---VFG-LKEFRKKY-PDRYVDVGIAEQHSVAFASGMAAAGARPVIF-V 350 (581)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCCCCC---CCC-CCHHHHHC-CCCEEECCHHHHHHHHHHHHHHHCCCEEEEE-E
T ss_conf 5698999999999998746441542135787---657-53132418-5016751608889999987897579964688-8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHH-HHHHHHHHCCCEEEEEECCHHCCCHHHHH
Q ss_conf 66789999999998788674211776788879983024457644443321-68876322031386652210001055565
Q gi|254780673|r 219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQC-YAAWYSHVPGLKVVIPYTASDAKGLLKAA 297 (467)
Q Consensus 219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~-~~~~~~~iPgl~V~~P~~~~d~~~ll~~a 297 (467)
T Consensus 351 fstFl~ra~dqi~~dial--------~~lpv~~~~~~~~igedGpTHq~iedia~lR~iPN~~V~~PaD~~E~~~~~~~A 422 (581)
T PRK12315 351 NSTFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSISGNSVTHQGSFDIAMISNIPNLVYLAPTSKEELIAMLEWA 422 (581)
T ss_pred ECHHHHHHHHHHHHHHHH--------HCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 442331468899899998--------369989999617778999875147788997256883899319999999999999
Q ss_pred HH-CCCCEEEECCCCCCCCCCCCCCC--CCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECC
Q ss_conf 41-37834764021233333453346--63121443114443168745860257888888887531004-6752797330
Q gi|254780673|r 298 IR-DPNPVIFLENEILYGSSFEVPMV--DDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLR 373 (467)
Q Consensus 298 i~-~~~Pvi~le~~~ly~~~~~~p~~--~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r 373 (467)
T Consensus 423 l~~~~gP~~i-----R~pr~-~~~~~~~~~~~~~~g~~~v~~~G~dv~Iia~Gs~v~~A~~aa~~L~~~~gI~~~Vi~~~ 496 (581)
T PRK12315 423 LTQHEHPVAI-----RVPEH-VLESGPTVDTDYSTLNYEVAKAGEKVAILALGDFYELGEKVAKKLKEKLGIDATLINPK 496 (581)
T ss_pred HHCCCCCEEE-----EECCC-CCCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9716995899-----93787-67778765555554418997558988999860778999999999875129987999577
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCCCCHHH
Q ss_conf 06857999999999871989999578876767899999999967764289829971777888889--6676560899899
Q gi|254780673|r 374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLALPNVDE 451 (467)
Q Consensus 374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~p~~~~ 451 (467)
T Consensus 497 ~vkPlD~~~l~~~~~~~~~ivtvEeh~~~GGlGs~v~~~l~~~~-----~~v~~~Gi~d~F~~sg~~~el~~~~Glt~e~ 571 (581)
T PRK12315 497 FITGLDEELLENLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFADRVPVEELYKRYHLTPEQ 571 (581)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCC-----CEEEEEECCCCCCCCCCHHHHHHHHCCCHHH
T ss_conf 24887999999998249879999279766458999999997679-----9089983588676889999999994969999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999850
Q gi|254780673|r 452 IIESVESICY 461 (467)
Q Consensus 452 I~~av~~v~~ 461 (467)
T Consensus 572 I~~~I~~~Lk 581 (581)
T PRK12315 572 IVEDILSVLK 581 (581)
T ss_pred HHHHHHHHHC
T ss_conf 9999999859