HHsearch alignment for GI: 254780673 and conserved domain: TIGR00998
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=90.04 E-value=0.4 Score=27.43 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=29.8
Q ss_pred EEEEEC-CCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 334317-778689899823788513269758999437
Q gi|254780673|r 45 VMEVES-IDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467)
Q Consensus 45 t~EV~A-~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467)
T Consensus 42 ~~~v~sF~VsG~v~~v~~~d~-d~Vk~GD~Lv~LD~t 77 (379)
T TIGR00998 42 QLQVSSFQVSGSVIEVNVDDT-DYVKQGDVLVRLDPT 77 (379)
T ss_pred CEEEEEEEEEEEEEEEEECCC-CCCEECCEEEEECCC
T ss_conf 302324657324899974378-842031156676771